cluster # 5577

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Anopheles gambiae
cluster # 5577 cluster # 5577 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5577#0 length = 719 sequences # 3

consensus_5577#1 length = 581 sequences # 1

consensusID : consensus_5577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 719
fasta sequence

                              [CCGCGGCTGAATGATGCGAAACAACAAGAAGGAAATTAAGTTAACATTTTCCGTAAATTTAAGATAAAATCATTGTTCAG-T-GATTTGTGATCACATAAATTATTCATCGCGCAATATCTGTACTATTACAATCTAATGTTCGTGGCT---CATTTTATCATCTGGAAAGTGGTGCCTCCTAGACTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCCAACAGTGAGTTTGGTCACCCGTCCTAATTATATGTAGCCATTTGATTGTGGTTTCCGTGTCGGATGGTGGCATATGATTCTTGTACACATGGCGGAAGCAAAATCACTTGTTATGATTCTATTATTTGGCGCTTCCAGATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACGTGATTTAGTTTTTGAGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGGGTCCGAACTACTCAATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCTGAACCAAACATATTTTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTACAGTTAGTGAGTGAAACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAATGAAATTCTACATCACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTACTAAAGAACGTATATA]

[+] EMBL BM614706             [CCGCGGCTGAATGATGCGAAACAACAAGAAGGAAATTAAGTTAACATTTTCCGTAAATTTAAGATAAAATCATTGTTCAGATGGATTTGTGATCACATAAATTATTCATCGCGCAATATCTGTACTATTACAATCTAATGTTCGTGGCTCAACATTTTATCATCTGGAAAGTGGTGCCTCCTAGACTAGACCGTATATATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM631712             [     ccgGAATGATGCGAAACAACAAGAAGGAAATTAAGTTAACATTTTCCGTAAATTTAAGATAAAATCATTGTTCAG T GATTTGTGATCACATAAATTATTCATCGCGCAATATCTGTACTATTACAATCTAATGTTCGTGGCT   CATTTTATCATCTGGAAAGTGGTGCCTCCTAGACTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCCAACAGTGAGTTTGGTCACCCGTCCTAATTATATGTAGCCATTTGATTGTGGTTTCCGTGTCGGATGGTGGCATATGATTCTTGTACACATGGCGGAAGCAAAATCACTTGTTATGATTCTATTATTTGGCGCTTCCAGATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACGTGATTTAGTTTTTGAGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGGGTCCGAACTACTCAATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCTGAACCAAACATATTTTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTACAGTTAGTGAGTGAAACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAATGAAATTCTACATCACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTACTAAAGAACGTATATA]
[+] EMBL BM583643             [                                                                                                                                                                                                                                     GCGCCAACAGTGAGTTTGGTCACCCGTCCTAATTATATGTAGCCATTTGATTGTGGTTTCCGTGTCGGATGGTGGCATATGATTCTTGTACACATGGCGGAAGCAAAATCACTTGTTATGATTCTATTATTTGGCGCTTCCAGATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACGTGATTTAGTTTTTGAGCTAGCGTTATATACAATTCCGGAAGTGATGGTTTCGACGT                                                                                                                                                                                                                                                              ]




>consensus_5577#0
CCGCGGCTGAATGATGCGAAACAACAAGAAGGAAATTAAGTTAACATTTTCCGTAAATTT
AAGATAAAATCATTGTTCAGTGATTTGTGATCACATAAATTATTCATCGCGCAATATCTG
TACTATTACAATCTAATGTTCGTGGCTCATTTTATCATCTGGAAAGTGGTGCCTCCTAGA
CTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCCAACAGTGAGTT
TGGTCACCCGTCCTAATTATATGTAGCCATTTGATTGTGGTTTCCGTGTCGGATGGTGGC
ATATGATTCTTGTACACATGGCGGAAGCAAAATCACTTGTTATGATTCTATTATTTGGCG
CTTCCAGATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACGTGATTTAGTTT
TTGAGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGGGTCCGAACTAC
TCAATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCTGAACCAAACAT
ATTTTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTACAGTTAGTGAGT
GAAACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAATGAAATTCTAC
ATCACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTACTAAAGAACGTATATA

consensusID : consensus_5577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [ACCCACGCGTCCGCCCACGCGTCCGTGCGAAACAACAAGAAGGAAATTAAGTTAACATTTTCCGTAAATTTAAGATAAAATCATTGTTCAGTGATTTGTGATCACATAAATTATTCATCGCGCAATATCTGTACTATTACAATCTAATGTTCGTGGCTCATTTTATCATCTGGAAAGTGGTGCCTCCTAGACTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCCAACAATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACGTGATTTAGTTTTTGAGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGGGTCCGAACTACTCAATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCTGAACCAAACATATTTTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTACAGTTAGTGAGTGAAACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAATGAAATTCTACATCACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTAC]

[+] EMBL BM643068             [ACCCACGCGTCCGCCCACGCGTCCGTGCGAAACAACAAGAAGGAAATTAAGTTAACATTTTCCGTAAATTTAAGATAAAATCATTGTTCAGTGATTTGTGATCACATAAATTATTCATCGCGCAATATCTGTACTATTACAATCTAATGTTCGTGGCTCATTTTATCATCTGGAAAGTGGTGCCTCCTAGACTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCCAACAATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACGTGATTTAGTTTTTGAGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGGGTCCGAACTACTCAATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCTGAACCAAACATATTTTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTACAGTTAGTGAGTGAAACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAATGAAATTCTACATCACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTAC]




>consensus_5577#1
ACCCACGCGTCCGCCCACGCGTCCGTGCGAAACAACAAGAAGGAAATTAAGTTAACATTT
TCCGTAAATTTAAGATAAAATCATTGTTCAGTGATTTGTGATCACATAAATTATTCATCG
CGCAATATCTGTACTATTACAATCTAATGTTCGTGGCTCATTTTATCATCTGGAAAGTGG
TGCCTCCTAGACTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCC
AACAATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACGTGATTTAGTTTTTG
AGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGGGTCCGAACTACTCA
ATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCTGAACCAAACATATT
TTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTACAGTTAGTGAGTGAA
ACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAATGAAATTCTACATC
ACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5577#0      ----------CCGCGGCTGAATG-ATGCGAAACAACAAGAAGGAAATTAAGTTAACATTT 49
consensus_5577#1      ACCCACGCGTCCGCCCACGCGTCCGTGCGAAACAACAAGAAGGAAATTAAGTTAACATTT 60
                                ****    *  *   ***********************************

consensus_5577#0      TCCGTAAATTTAAGATAAAATCATTGTTCAGTGATTTGTGATCACATAAATTATTCATCG 109
consensus_5577#1      TCCGTAAATTTAAGATAAAATCATTGTTCAGTGATTTGTGATCACATAAATTATTCATCG 120
                      ************************************************************

consensus_5577#0      CGCAATATCTGTACTATTACAATCTAATGTTCGTGGCTCATTTTATCATCTGGAAAGTGG 169
consensus_5577#1      CGCAATATCTGTACTATTACAATCTAATGTTCGTGGCTCATTTTATCATCTGGAAAGTGG 180
                      ************************************************************

consensus_5577#0      TGCCTCCTAGACTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCC 229
consensus_5577#1      TGCCTCCTAGACTAGACCGTATATATCAAACCCAATTCGATGAAATTGAATAAACGCGCC 240
                      ************************************************************

consensus_5577#0      AACAGTGAGTTTGGTCACCCGTCCTAATTATATGTAGCCATTTGATTGTGGTTTCCGTGT 289
consensus_5577#1      AACA-------------------------------------------------------- 244
                      ****                                                        

consensus_5577#0      CGGATGGTGGCATATGATTCTTGTACACATGGCGGAAGCAAAATCACTTGTTATGATTCT 349
consensus_5577#1      ------------------------------------------------------------
                                                                                  

consensus_5577#0      ATTATTTGGCGCTTCCAGATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACG 409
consensus_5577#1      ------------------ATTCCATCCATCCAGATCCAGAAAAACATTACAGAACCAACG 286
                                        ******************************************

consensus_5577#0      TGATTTAGTTTTTGAGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGG 469
consensus_5577#1      TGATTTAGTTTTTGAGCTAGCGTTATATACAATTCCGGAAGTGATGTTTTCGACGTAGGG 346
                      ************************************************************

consensus_5577#0      GTCCGAACTACTCAATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCT 529
consensus_5577#1      GTCCGAACTACTCAATCCTGATATGGGTTGTATAAGCAAATTACACTACTCTTACAAGCT 406
                      ************************************************************

consensus_5577#0      GAACCAAACATATTTTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTAC 589
consensus_5577#1      GAACCAAACATATTTTATAAACATTATTCGTGCGACTTAATGCAAAAATAGAAAAGCTAC 466
                      ************************************************************

consensus_5577#0      AGTTAGTGAGTGAAACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAA 649
consensus_5577#1      AGTTAGTGAGTGAAACGATATCACTATCAACAGTTTAATCATCTCTTTAAACATTTAAAA 526
                      ************************************************************

consensus_5577#0      TGAAATTCTACATCACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTACTAAAG 709
consensus_5577#1      TGAAATTCTACATCACAGTTCATGTATTTTACGCTTAAGCACATGTACGCATTAC----- 581
                      *******************************************************     

consensus_5577#0      AACGTATATA 719
consensus_5577#1      ----------