These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 995 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCGTCTGCTCACCATCATGTGTTGAATATTGTAATAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGATAGGCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGGTACAACTACACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCGGTTGATCGCACCCCGGCTAGTGTTCGTCGTCAAATCGGCCATCGAGCACTTCGACCGGCGGGCAACGATCCGCAAAACGTGGGGCTACGAGCGCCGCTTCTCGGACGTCAAGATACGCACCGTGTTTGTGCTCGGCCGGTCGCGCGTGCACCCGAACCGGCGGCTCCAGTCGCTCGTGGACCTCGAGAGCAGCACGTACCGGGACATCGTGCAGGCTGACTTTGTTGACGATT] [+] EMBL BM584180 [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCGTCTGCTCACCATCATGTGTTGAATATTGTAATAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGATAGGCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCC ] [+] EMBL BM591037 [ ccgATTCGATCACACCTACACCAACCGATTGAATGATAGGCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGGTACAACTACACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCG ] [+] EMBL BX624172 [ TCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGGCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAGCTCAAGTATGTGCTGGCGGCATTGGTCGGCCTGTACCTGCTGCAGTTCTTCGGTGCCTTCACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATCCTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGGTACAACTATACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCGGTTGATCGCACCCCGGCTAGTGTTCGTCGTCAAATCGGCCATCGAGCACTTCGACCGGCGGGCAACGATCCGCAAAACGTGGGGCTACGAGCGCCGCTTCTCGGACGTCAAGATACGCACCGTGTTTGTGCTCGGCCGGTCGCGCGTGCACCCGAACCGGCGGCTCCAGTCGCTCGTGGACCTCGAGAGCAGCACGTACCGGGACATCGTGCAGGCTGACTTTGTTGACGATT] consensusID : consensus_5584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [ATCGTCTGCTCACCATCATGTGTTGAATATTGTAATNAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGGTAGGCGCACCGATCCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCACGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGGCTTTNCCGGTTGCGTNCGCGATGCTGCCCCGGATCTGTGTGANATCAAGCNCCAGTATGTGCNGGCCGCCTCGGTCNGCCTGTACCNGCTGCAGTCCTTCCGTGCCTTCACACACTTCTTCGAGAAGGATTNCGAGTCGACGTCCGACTACCCGCTGAA] [+] EMBL BX619852 [ATCGTCTGCTCACCATCATGTGTTGAATATTGTAATNAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAATGGTAGGCGCACCGATCCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATCCACGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCCTCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTTCACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATTAATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTACGGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGTCACCCATCGGCTTTNCCGGTTGCGTNCGCGATGCTGCCCCGGATCTGTGTGANATCAAGCNCCAGTATGTGCNGGCCGCCTCGGTCNGCCTGTACCNGCTGCAGTCCTTCCGTGCCTTCACACACTTCTTCGAGAAGGATTNCGAGTCGACGTCCGACTACCCGCTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5584#0 CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCGTCTGCTCACCATCATGTGTTGAATATT 60 consensus_5584#1 -----------------------------ATCGTCTGCTCACCATCATGTGTTGAATATT 31 ****************************** consensus_5584#0 GTAATA-GCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAA 119 consensus_5584#1 GTAATNAGCTTCCCCTTTTTCAGTTTTTCCATTCGATCACACCTACACCAACCGATTGAA 91 ***** ***************************************************** consensus_5584#0 TGATAGGCGCAC----------TGACTCACCAGCACATTCGTCTCCGGAAACATCACATC 169 consensus_5584#1 TGGTAGGCGCACCGATCCGCACTGACTCACCAGCACATTCGTCTCCGGAAACATCACATC 151 ** ********* ************************************** consensus_5584#0 CTCGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCC 229 consensus_5584#1 CACGCTTCCTGTAGTTTGTGTGTAGCGAACCAAAAGAAAAAAAGAAGTACCAAACCAGCC 211 * ********************************************************** consensus_5584#0 TCCTTCTCCGGCTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTT 289 consensus_5584#1 TCCTTCTCCGGTTGCATGTCATCAGTCGGTGCAAGTGTACGGGCAATTTAATTAGTGCTT 271 *********** ************************************************ consensus_5584#0 CACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATT 349 consensus_5584#1 CACATCAACGGCAGTTTAGAACGGCGCATGCTGGCGCGTTGGCGTTGCGTTAATTAGATT 331 ************************************************************ consensus_5584#0 AATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTAC 409 consensus_5584#1 AATGCGCGTTCATTTCGGACCGGTGGATTGGTGGTAATTATGTAAGCCCGCTGCTGGTAC 391 ************************************************************ consensus_5584#0 GGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGT 469 consensus_5584#1 GGTTCACGCCGTTTGGCCCATCGTAAGCGAAGCGGCGTACAACAACAGGCACACTCCGGT 451 ************************************************************ consensus_5584#0 CACCCATCGCCTTTCCCGGTTGCGTTCGCGATGCTGCCCCGGATCTGTGTGAAATTTAAG 529 consensus_5584#1 CACCCATCGGCTTTNCCGGTTGCGTNCGCGATGCTGCCCCGGATCTGTGTGANATC-AAG 510 ********* **** ********** ************************** ** *** consensus_5584#0 CTCAAGTATGTGCTGGCGGCATTGGTCGTCCTGTACCTGCTGCAGTTCTTCGGTGCCTTC 589 consensus_5584#1 CNCCAGTATGTGCNGGCCGCCTCGGTCNGCCTGTACCNGCTGCAGTCCTTCCGTGCCTTC 570 * * ********* *** ** * **** ******** ******** **** ******** consensus_5584#0 ACACACTTCTTCGAGAAGGATTTCGAGTCGACGTTCGACTACCCGCTGAACGGGGACATC 649 consensus_5584#1 ACACACTTCTTCGAGAAGGATTNCGAGTCGACGTCCGACTACCCGCTGAA---------- 620 ********************** *********** *************** consensus_5584#0 CTGTCGGACGTGTACCAGCTGCGGCATGGCCAGCAGCCCGCCCGGCCACCGATCAACCGG 709 consensus_5584#1 ------------------------------------------------------------ consensus_5584#0 TACAACTACACCTACATCACCGACTGCGAGCACAAGTGCAAGGAGGACGATCGGTTGATC 769 consensus_5584#1 ------------------------------------------------------------ consensus_5584#0 GCACCCCGGCTAGTGTTCGTCGTCAAATCGGCCATCGAGCACTTCGACCGGCGGGCAACG 829 consensus_5584#1 ------------------------------------------------------------ consensus_5584#0 ATCCGCAAAACGTGGGGCTACGAGCGCCGCTTCTCGGACGTCAAGATACGCACCGTGTTT 889 consensus_5584#1 ------------------------------------------------------------ consensus_5584#0 GTGCTCGGCCGGTCGCGCGTGCACCCGAACCGGCGGCTCCAGTCGCTCGTGGACCTCGAG 949 consensus_5584#1 ------------------------------------------------------------ consensus_5584#0 AGCAGCACGTACCGGGACATCGTGCAGGCTGACTTTGTTGACGATT 995 consensus_5584#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||