These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 682 fasta sequence [CCGACGGAAAAGAAACCGCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAATTGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTGGCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATACCTTCCCGCTATCCGTCGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCATGGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATACCATCGCCGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTTCAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACAATACAACGA--A-AAGAACATATCACCAAATGCAGGACGAGCCGTTGCATGCAGCCGCCTATTAACGGAGCGGTGATACAATCCGTT] [+] EMBL BM584446 [CCGACGGAAAAGAAACATCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAATTGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTGGCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATACCTTCCCGCTATCCGTCGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCATGGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATACCATCGCCGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTTCAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACAATACGACGA A AAGAACATAT ] [+] EMBL BM598382 [ CCGCGCAAGTGCGCTGTGTTGATGTGGGAAATAAAAGTACACAATTGTTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCGGCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGTCGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCACAGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATAGCATCGCCGTCATCATCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCATCGTCGT T CGTTCCAGCGCAGATCTCATCACAAATATCGGGACCGACAGTCCCATCTTCAATGCAATCGGACACTGCTCCATATTACAATCCGTTGCCCTCGTATGATTGCAATAACAATACAACGA A AAGAACATACCACCAAATGCAGGACGAGCCGTTGCATGCAGCCGCCTATTAACGGAGCGGTGATACAATCCGTT] [+] EMBL BM588389 [ CCGCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAATTGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTGGCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTTATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATACCTTCCCGCTATCCGTCGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCATGGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATACCATCGCCGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTTCAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACAATACAACGACGAGAAGAACATATCACCAAATGCAGG ] consensusID : consensus_5590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [GATCGCACGAGGTGTAAAAGTGAACCGGCCTTGCAATACTGTTCACCGATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCGGCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAAGTTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGTCGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCACAGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAAGTAGCATCGCCGTCATCATCACG] [+] EMBL BX469129 [GATCGCACGAGGTGTAAAAGTGAACCGGCCTTGCAATACTGTTCACCGATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCGGCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAAGTTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGTCGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCACAGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAAGTAGCATCGCCGTCATCATCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5590#0 CCGACGGAAAAGAAACCGCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAAT 60 consensus_5590#1 ------------------------------------------------------------ consensus_5590#0 TGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCG 120 consensus_5590#1 ---------GATCGCACGAGGTGTAAAAGTGAACC-GGCCTTGC--AATACTGTTCACCG 48 *** * ********** ******* ************** consensus_5590#0 ATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTG 180 consensus_5590#1 ATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCG 108 **** ***************************************************** * consensus_5590#0 GCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCA 240 consensus_5590#1 GCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCA 168 ********** ************************************************* consensus_5590#0 TATCCGTACCTCTTCGGGGCCAA-TTCCTTGGACTGGAACAATACCTTCCCGCTATCCGT 299 consensus_5590#1 TATCCGTACCTCTTCGGGGCCAAGTTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGT 228 *********************** ******************* ******** * ***** consensus_5590#0 CGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCAT 359 consensus_5590#1 CGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCAC 288 *** ******** ******** **** ************************* ****** consensus_5590#0 GGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAA-TACCATCGC 418 consensus_5590#1 AGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAAGTAGCATCGC 348 *********** ************************************* ** ****** consensus_5590#0 CGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGT 478 consensus_5590#1 CGTCATCATCACG----------------------------------------------- 361 ******* **** consensus_5590#0 CGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTT 538 consensus_5590#1 ------------------------------------------------------------ consensus_5590#0 CAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACA 598 consensus_5590#1 ------------------------------------------------------------ consensus_5590#0 ATACAACGAAAAGAACATATCACCAAATGCAGGACGAGCCGTTGCATGCAGCCGCCTATT 658 consensus_5590#1 ------------------------------------------------------------ consensus_5590#0 AACGGAGCGGTGATACAATCCGTT 682 consensus_5590#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||