These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1246 fasta sequence [CCGCGCTTGGCATTGTCTCGAGAGTGCCCGAGAGCTACACGGGGTTCACCTGCACCACATCCGGAGAACTGGGAAAAGGGAAAACAATAGGAAGCGGATTCTAGCGATTGCCGACCGAGCTGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGCGACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCGGCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAGCCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGTTAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATAATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGATGTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAGGTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGACTATATGCAGCTACATAGAGGGGCGGAGAGAACAAGTGAACGTTGAATCATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCGAGGAACCAATAACGTCACCGAGAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCCGTAAATGTTATTATTAGAGAGATAGANAGAGAGAGGGATAGAGTGTGGGGAA] [+] EMBL BM602922 [CCGCGCTTGGCATTGTCTCGAGAGTGCCCGAGAGCTACACGGGGTTCACCTGCACCACATCCGGAGAACTGGGAAAAGGGAAAACAATAGGAAGCGGATTCTAGCGATTGCCGACCGAGCTGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGCGACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCGGCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAGCCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGTTAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATAATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGATGTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAGGTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCG ] [+] EMBL BM584613 [ cCGGATTCTAGCGATTGCCGACCGAGCTGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGCGACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCGGCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAGCCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGTTAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATAATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGATGTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAGGTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGACTATATGCAGCTACATAGAGGGGCGGAGAGAACAAGTGAACGTTGAATCATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTG ] [+] EMBL BX620291 [ TCCGGAACGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGACTATATGCAGCTACATAGAGGGGCGGAGAGAACAAGTGAACGTTGANTCATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCGAGGAACCAATAACGTCACCGAGAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCCGTAAATGTTATTATTAGAGAGATAGANAGAGAGAGGGATAGAGTGTGGGGAA] consensusID : consensus_5593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGGCCGGCGGACCATATGCAGCTACATAGAGGGGCGGAGAGCGAGAGAGAGAGAGCAAGTGAACGTTGAATCATCGATTGGAGGCAATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCAAGGAACCAATAACGTCACCGAAAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCG] [+] EMBL BM624353 [CCGGCCGGCGGACCATATGCAGCTACATAGAGGGGCGGAGAGCGAGAGAGAGAGAGCAAGTGAACGTTGAATCATCGATTGGAGGCAATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACAACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCAAGGAACCAATAACGTCACCGAAAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGTATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTATATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCGGGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCCCGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAAGCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCATGTAGCCCCGAGAGTAGCGCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGAATTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5593#0 CCGCGCTTGGCATTGTCTCGAGAGTGCCCGAGAGCTACACGGGGTTCACCTGCACCACAT 60 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 CCGGAGAACTGGGAAAAGGGAAAACAATAGGAAGCGGATTCTAGCGATTGCCGACCGAGC 120 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 TGGAAAAGAAGACAGGCAGGATGTCGTCAAAAAACATACCAGCTGATAAGATAAATCTGC 180 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 GACTAATACTCGTCAGTGGCAAGACGAAAGAATTCCTCTTCAGTCAGACGGACTCAGCCG 240 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 GCGACATAGCACTCACAGTATTCGAAAATTGGCCCGATGATTGGGAAGCGGAAGCGGTAG 300 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 CCAAGGCCGAAATCTTAAGACTAATATACCAGGGACGCTTTCTACACTGCAACGTAACGT 360 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 TAGGGGCGCTGGGGCTACCATTAGGCAAAACAACCGTGATGCACTTGGTACCGCGTGATA 420 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 ATTTACCCGAGCCAAACTCACAGGACCAGCGACAAAAGAGCAAAGGCGGTTCCAGTAGAT 480 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 GTTGTTCCACGAGTTGTTGTATACTGTAACCACCATCACGACGACGAAGAGATGACACAG 540 consensus_5593#1 ------------------------------------------------------------ consensus_5593#0 GTGCTGCTCCGGATCGGCCATGGCTGGTGTGTATTATGACTGCGGGACGTGCCGGCGGAC 600 consensus_5593#1 -----------------------------------------------CCGGCCGGCGGAC 13 * ********** consensus_5593#0 TATATGCAGCTACATAGAGGGGCGGAGAG------------AACAAGTGAACGTTGAATC 648 consensus_5593#1 CATATGCAGCTACATAGAGGGGCGGAGAGCGAGAGAGAGAGAGCAAGTGAACGTTGAATC 73 **************************** * ***************** consensus_5593#0 ATCGATTGGAGGCGATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACA 708 consensus_5593#1 ATCGATTGGAGGCAATTGATCTGATATGTTGTGTACATTGTGTCATGTTGACCGTTGACA 133 ************* ********************************************** consensus_5593#0 ACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCGAGGAACCA 768 consensus_5593#1 ACAGTTCGGCATGTTGCGGGTGCACCACACGCGCCCAGTGCGATTGGAAGCAAGGAACCA 193 *************************************************** ******** consensus_5593#0 ATAACGTCACCGAGAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGT 828 consensus_5593#1 ATAACGTCACCGAAAGAATGGCACCGAATAGCAAAGTGTTGTTGTTATTTGGTTGTTCGT 253 ************* ********************************************** consensus_5593#0 ATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTA 888 consensus_5593#1 ATTTCCCGTAGGATTAGCGCGAAATCCGTTAGCGCGTGTGCGACGCAACGGTGGGGTCTA 313 ************************************************************ consensus_5593#0 TATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCG 948 consensus_5593#1 TATTCTATGCATGTTTTTCATCTCCTATGGAGTGTCTGTGTGCTGATAGTAGTGGATGCG 373 ************************************************************ consensus_5593#0 GGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCC 1008 consensus_5593#1 GGTGCGTAGTTTGTTTTAGTATTGACACAATTCCTGGTGCACAGATAGAGGAATAGCCCC 433 ************************************************************ consensus_5593#0 CGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAA 1068 consensus_5593#1 CGCCAGCAACACCCAGTTTCCAAAGTTCAGGCGTCATTAGTGTTCCAGTCGGCTTCAAAA 493 ************************************************************ consensus_5593#0 GCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCAT 1128 consensus_5593#1 GCTTTGCAAAGATTCGTCGTTCACAAAACCACTCGAGCAGACACGCAAACGCGACGTCAT 553 ************************************************************ consensus_5593#0 GTAGCCCCGAGAGTAGCGCCCGTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGA 1188 consensus_5593#1 GTAGCCCCGAGAGTAGCGCC-GTTGTGTTGTGGCGCTTTTGTATTATTAGGAAGCAGCGA 612 ******************** *************************************** consensus_5593#0 ATTTCCGTAAATGTTATTATTAGAGAGATAGANAGAGAGAGGGATAGAGTGTGGGGAA 1246 consensus_5593#1 ATTTCG---------------------------------------------------- 618 ***** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||