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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1215 fasta sequence
[ATCGCACNGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATNGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGCGTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTGGTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGGGCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTTGTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAGCAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGC-GGGTGTCGTGCACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCACTCCAGCGTGTAGAACTCCTTGATCCGGTCGTCTTTCTCCTGCTGCCGAGCCGCCCCATTCCCTTCCGATTTGTCTTTGCCTCGCTCCGTGCTCTCCTCCTTTCGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGACGGACCTTGCGCCGGGTCGCCACGACGTACTCATCGTCCGTGCTCGCATCCAAGTCCGATTCCGACTGGGCCGTAATGCTTCCATCGTACTCTTCCTTCACATCCACACACTCAATGCCCGGCGGCAGCTCCTCCAGCCTTTCCGCTGGCATGATTTCAATCTGAAGGTCCGGCTCTACCTTGACCGGTTCCGGCTCAACATCCGTATCCTTGGCCAGCTCTAACCGTAGCTGGCGCTGGTTCGCCTCCACCTGCTGGCTGTACACGTGAAACTCGGCCACTGTCGTTTGGCACTGCTGGCATACCTGTTCCGGTAAGGGCTCTTCCGTCGAGATCTCGAATAAAAACACATTTCGCAGCTTTTGCTGAAACGACTCGTCCACTATCGAGACGGCGATGGCACACTGCACTTCCTCCAAACACAGGCGACACTTTTCATTCATTTTATTCGCAATGCTGCGCTATCGCTCCGG]
[-] EMBL BX627459 [ATCGCACNGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATNGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGCGTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTGGTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGGGCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTTGTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAGCAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGC GGGTGTCGTGCACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCACTCCAGCGTGTAGAACTCCTTGATCCGGTCG ]
[-] EMBL BX607227 [ AGATTGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGCGTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTGGTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGGGCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTTGTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAGCAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGC GGGTGTCGTGCACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCA ]
[-] EMBL BM586743 [ GTATATAGCCCCGGGGTGTCGTGCACTAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTCGCACTCCAGGGTGTAGAACTCCTTGATCCGGTCGTCTTTCTCCTGCTGCCGAGCCGCCCCATTCCCTTCCGATTTGTCTTTGCCTCGCTCCGTGCTCTCCTCCTTTCGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGACGGACCTTGCGCCGGGTCGCCACGACGTACTCATCGTCCGTGCTCGCATCCAAGTCCGATTCCGACTGGGCCGTAATGCTTCCATCGTACTCTTCCTTCACATCCACACACTCAATGCCCGGCGGCAGCTCCTCCAGCCTTTCCGCTGGCATGATTTCAATCTGAAGGTCCGGCTCTACCTTGACCGGTTCCGGCTCAACATCCGTATCCTTGGCCAGCTCTAACCGTAGCTGGCGCTGGTTCGCCTCCACCTGCTGGCTGTACACGTGAAACTCGGCCACTGTCGTTTGGCACTGCTGGCATACCTGTTCCGGTAAGGGCTCTTCCGTCGAGATCTCGAATAAAAACACATTTCGCAGCTTTTGCTGAAACGACTCGTCCACTATCGAGACGGCGATGGCACACTGCACTTCCTCCAAACACAGGCGACACTTTTCATTCATTTTATTCGCAATGCTGCGCTATCGCTCCGG]
consensusID : consensus_5613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence
[CGATTAATCACTTTTCTTGAAGTCGACAAGTAAAATAGCATAACTACTGGGGAACAATCGTTTAATGCCAATTGGCAATGTGCTAAAAATAAGAACGCATTTCTAATGTCTTTGAATAACGAATTGGAACGTTCGCCTATCACTCTAGCGTTTTTCTAACTAAGAGCGGAAAATAATTCACCTATTAATAGCGCCTTTTCTTCACCATTTAATACGCTAATCAAACTCAAGATCCTGCTGCCCTGCAAACCGACCTCAATGCTTGCTCATCTTCTTCAGCATCCGCATTCGCTTGTGCGCTTCCCATTCCTCCGGGTGCTTGTTTTTCCGATGCGTAAAATGGTTCGCGTGCGAGTTAAACTTCATCCCGCAGTACTCGCACGTGTACAGTGGCACGTTCGTGTGCGACGCAATGTGCTCGCGCAGATACAGCTTCCGCTTGAACCGCTTGCCGCACAGCTCACACTCGTGCTTTTCCTGCACATGCACCCGCTGCTTGTGGTACGACAGGGCCCGGCTGTTCGGGCTCTCGTGCGCACACAGATCGCAACGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATTGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGTTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGGGCACCTTGAGGGCGTAATTGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGA]
[+] EMBL CNS08GPK [CGATTAATCACTTTTCTTGAAGTCGACAAGTAAAATAGCATAACTACTGGGGAACAATCGTTTAATGCCAATTGGCAATGTGCTAAAAATAAGAACGCATTTCTAATGTCTTTGAATAACGAATTGGAACGTTCGCCTATCACTCTAGCGTTTTTCTAACTAAGAGCGGAAAATAATTCACCTATTAATAGCGCCTTTTCTTCACCATTTAATACGCTAATCAAACTCAAGATCCTGCTGCCCTGCAAACCGACCTCAATGCTTGCTCATCTTCTTCAGCATCCGCATTCGCTTGTGCGCTTCCCATTCCTCCGGGTGCTTGTTTTTCCGATGCGTAAAATGGTTCGCGTGCGAGTTAAACTTCATCCCGCAGTACTCGCACGTGTACAGTGGCACGTTCGTGTGCGACGCAATGTGCTCGCGCAGATACAGCTTCCGCTTGAACCGCTTGCCGCACAGCTCACACTCGTGCTTTTCCTGCACATGCACCCGCTGCTTGTGGTACGACAGGGCCCGGCTGTTCGGGCTCTCGTGCGCACACAGATCGCAACGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATTGTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGTTCCAGCCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGGGCACCTTGAGGGCGTAATTGCTCCTTTCGCTCCTTTCGTTCGCGCGCTTTACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5613#0 ATCGCACNGAAACACCTGCCCCCGCTCGTTGTGCAGGAAGCGAATGTGCTTGTTCAGATN 60
consensus_5613#1 ------------------------------------------------------------
consensus_5613#0 GTACTTCCCGTTGAACCACTTCTGGCAGTACTCGCACTGCATCCGCTCGATCGGCTCCAG 120
consensus_5613#1 ------------------------------------------------------------
consensus_5613#0 CCCCATATGCTCCTTGATGTGCCGCTCCATCGCCGCCTTGGTGCGGAAAATTTTGCCGCA 180
consensus_5613#1 ------------------------------------------------------------
consensus_5613#0 CGTCGCACAGATCTGGTTCCCATCGTCGCTGTGCATCTGCGTGAGGTGCACCTTGAGGGC 240
consensus_5613#1 ------------------------------------------------------------
consensus_5613#0 GTAATTGCTCGACAGCACCTTCTTGCAGACGTGGCACTCCGCCTGCACGTGCATCAGCTG 300
consensus_5613#1 ------------------------------------------------------------
consensus_5613#0 GTGCGACCGGAGCAGATACTGCTTCGGATAGGCCAGCCCGCACTGGTCGCACTTGAACGG 360
consensus_5613#1 --------CGATTAATCACTTTTCTTGA--AGTCGACAAGTAA-AATAGCAT---AACTA 46
** * *** * ** * * * * * * *** ***
consensus_5613#0 GCGCTCCTCCTCCGTGCCGTGGCTTTTGGCCATGTGCAGCGCCAGGTAGCGCTTCGTTTT 420
consensus_5613#1 CTGGGGAACAATCGTTTAATGCCAATTGGCAATGTGCTAA---AAATAAGAACGCATTTC 103
* * *** ** * ***** ****** * ** * ***
consensus_5613#0 GTACGTTCTGTCGCACACCTCGCACCGGATCGTTCCCCGATGCACCGCGATATGGTCGAG 480
consensus_5613#1 TAATGTCTT----TGAATAACGAATTGGAACGTTCGCCTAT-CACTCTAGCGTTTTT--C 156
* ** * * ** * *** ***** ** ** *** * *
consensus_5613#0 CAGCGTGTAGCGATGGAAGAGCTGCTTGTTGCAGCACCGTATATAGCCGCGGGTGTCGTG 540
consensus_5613#1 TAACTAAGAGCGGAAAATAATTCACCTATT--------------AATAGCGCCTTTTCTT 202
* * **** * * * * ** * *** * * *
consensus_5613#0 CACCAGCTGGTAGTGCTCCTGCAGCTGCACAAAGTCATCCAACAGGATGGAGCAGATTTC 600
consensus_5613#1 CACCATTTAATA-CGCTAATCAAACT---CAAGATCCTGCTGCCCTGCAAACCGACCTCA 258
***** * ** *** * * ** *** ** * * * * * *
consensus_5613#0 GCACTCCAGCGTGTAGAACTCCTTGATCCGGTCGTCTTTCTCCTGCTGCCGAGCCGCCCC 660
consensus_5613#1 ATGCT------TGCTCATCTTCTTCAGC--ATCCGCATTCGCTTG-TGCG----CTTCCC 305
** ** * ** *** * * ** * *** * ** *** * ***
consensus_5613#0 ATTCCCTTCCGATTTGTCTTTGCCTCGCTCCGTGCTCTCCTCCTTTCGCTCCTTTCGCTC 720
consensus_5613#1 ATTCC--TCCGGGTGCTTGTTTTTCCGATGCGTAAAATGGTTCGCGTGCGAGTTAAACTT 363
***** **** * * ** ** * *** * * * ** ** **
consensus_5613#0 CTTTCGTTCGCGCGCTTTACGACGGACCTTGCGCCGGGTCGCCACGACGTACTCATCGTC 780
consensus_5613#1 CATCC---CGCAGTACTCGC-ACGTGTACAGTGGCACGT--TCGTGTGCGACGCAATGTG 417
* * * *** * * *** * * * ** * * ** ** **
consensus_5613#0 CGTGCTCGCATCCAAGTCCGATTCCGACTGG--GCCGTAATGCTTCCA-TCGTACTCTTC 837
consensus_5613#1 CTCGCGCAGATACAGCTTCCGCTTGAACCGCTTGCCGCACAGCTCACACTCGTGCTTTTC 477
* ** * ** ** * * * ** * **** * *** ** **** ** ***
consensus_5613#0 CTTCACATCCACACACTCAATGCCCGGCGGCAGCTCCTCCAGCCTTTCCG---CTGGCAT 894
consensus_5613#1 CTGCACATGCACCCGCTGCTTGTGGTACGACAGGGC--CCGGCTGTTCGGGCTCTCGTGC 535
** ***** *** * ** ** ** *** * ** ** *** * ** *
consensus_5613#0 GATTTCAATCTGAAGGTCCGGCTCTACCTTGACCGGTTCCGGCTCAACATCCGTATCCTT 954
consensus_5613#1 GCACACAGATCGCAACGAAACACCTGCCCCCGCTCGTTGTG---CAGGAAGCGAATGT-- 590
* ** * * ** ** * *** * ** * ** **
consensus_5613#0 GGCCAGCTCTAACCGTAGCTGGCGCTGGTTCGCCTCCACCTGCTGGCTGTACACGTGAAA 1014
consensus_5613#1 -GCTTGTTCAGATTGTACTTCCCGTTGAACCACTT-------CTGGCAGTACTCGC--AC 640
** * ** * *** * ** ** * * * ***** **** ** *
consensus_5613#0 CTCGGCCACTGTCGTTTGGCACTGCTGGCATACCTGTTCCGGTAAGGGCTCTTCCGTCGA 1074
consensus_5613#1 TGCATCCGC--TCGATCGGTTCCAGCCCCATA--TGCTCCTTGATGTGCCGCTCCATCGC 696
* ** * *** * ** * **** ** *** * * ** *** ***
consensus_5613#0 GATCTCGAATAAAAACACATT-TCGCAGCTTTTGCTGAAACGACTCGTCCACTATCGAGA 1133
consensus_5613#1 CGCCTTGGTGCGGAAAATTTTGCCGCACGTCGCACAGATCTGGTTC--CCATCGTCGCTG 754
** * ** * ** **** * * ** * ** *** ***
consensus_5613#0 CGGCGATGGCACACTGCACTTCCTCCAAACACAGGCGACACTTTTCATTCATTTTATTCG 1193
consensus_5613#1 TG-CATCTGCGTGAGGGGCACCTTGAGGGCGTAATTG-CTCCTTTCGCTCCTTTCGTTCG 812
* * ** * * * * * * * * * **** ** *** ****
consensus_5613#0 CAATGCTGCGCTATCGCTCCGG 1215
consensus_5613#1 CG-CGCTTTACGA--------- 824
* *** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||