These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1445 fasta sequence [CCGCCCACGCGTCCGAGAACAAAGTGTTCGAGAAGGCACGCGAACAGGTGATGAAGATGTCCGGCGGTCTGTACCCGGCTCCGCTCAAGATTCTGGACGTGATCCGCGTCGGTGTGGACAAGGGCCAGGAAGCCGGGTACGAGGCGGAGCGTAAAGGATTTGGCGAACTGTCGCAAACGCCCCAGTCGAAGGGTCTGATTGGCCTGTTCCGTGGCCAAACCGAGTGCAAAAAGAATCGCTTCGGCAAGCCGGCGAACCCACCGAAAACGATTGGCGTGCTGGGAGCGGGTCTGATGGGTGCCGGTATCGTGCAGGTCAGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCATTGAGGCCGTGTTCGAGAACATCGACATTAAGCACCGCGTCATCAAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCGCCACGAACACGTCCGCTATTCCGATCACTAAGATCGCTGCCGGCAGTTCTCGACCGGAGAACGTCGTTGGCATGCACTACTTCTCCCCCGTTGACAAGATGCAACTGTTGGAGATTATTACGCATCCGGGCACGTCCAAGGAGACGGCGGCTGCTGCCGTCGAGGTGGGCCTGCGACAGGGCAAGGTGGTCATCACCGTGGGTGACGGACCCGGTTTCTACACGACCCGCATCCTCTCGACCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACAAGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTATCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCGGTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGGGCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACGCTCTCGCCATCATGAAGCAGAAGTACGCCCTGCAGTCGCGCGGTGCTAACAGCGTGGAGGACATGCAGCTGCGCATGGTTTCGCGCTTTGTGAACGAAGCCGTCCTCTGTCTGGAGGAGAAAATCCTGGACAGCCCCCTGGAGGGTGATGTTGGTGCCGTGTTCGGTCTGGGCTTCCCGCCATTCACCGGTGGACCGTTCCGCTGGGTGGACCAGTACGGTGCGGAACGGCTCGTCAGCAAGATGCGCTCGTACGCCGATCTGTACGGTGCTCCGTTCGTGCCGGCCCAAACCCTGCTCGACATGGCC] [+] EMBL BM605922 [CCGCCCACGCGTCCGAGAACAAAGTGTTCGAGAAGGCACGCGAACAGGTGATGAAGATGTCCGGCGGTCTGTACCCGGCTCCGCTCAAGATTCTGGACGTGATCCGCGTCGGTGTGGACAAGGGCCAGGAAGCCGGGTACGAGGCGGAGCGTAAAGGATTTGGCGAACTGTCGCAAACGCCCCAGTCGAAGGGTCTGATTGGCCTGTTCCGTGGCCAAACCGAGTGCAAAAAGAATCGCTTCGGCAAGCCGGCGAACCCACCGAAAACGATTGGCGTGCTGGGAGCGGGTCTGATGGGTGCCGGTATCGTGCAGGTCAGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCATTGAGGCCGTGTTCGAGAACATCGACATTAAGCACCGCGTCATCAAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCGCCACGAACACG ] [+] EMBL BM639994 [ ccgAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCGCCACGAACACGTCCGCTATTCCGATCACTAAGATCGCTGCCGGCAGTTCTCGACCGGAGAACGTCGTTGGCATGCACTACTTCTCCCCCGTTGACAAGATGCAACTGTTGGAGATTATTACGCATCCGGGCACGTCCAAGGAGACGGCGGCTGCTGCCGTCGAGGTGGGCCTGCGACAGGGCAAGGTGGTCATCACCGTGGGTGACGGACCCGGTTTCTACACGACCCGCATCCTCTCGACCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACAAGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTATCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCGGTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGGGCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACGCTCTCGCCATCA ] [+] EMBL BM620240 [ ccgCGCATCCTCTCGACCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACAAGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTATCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCGGTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGGGCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACGCTCTCGCCATCATGAAGCAGAAGTACGCCCTGCAGTCGCGCGGTGCTAACAGCGTGGAGGACATGCAGCTGCGCATGGTTTCGCGCTTTGTGAACGAAGCCGTCCTCTGTCTGGAGGAGAAAATCCTGGACAGCCCCCTGGAGGGTGATGTTGGTGCCGTGTTCGGTCTGGGCTTCCCGCCATTCACCGGTGGACCGTTCCGCTGGGTGGACCAGTACGGTGCGGAACGGCTCGTCAGCAAGATGCGCTCGTACGCCGATCTGTACGGTGCTCCGTTCGTGCCGGCCCAAACCCTGCTCGACATGGCC] consensusID : consensus_5614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [CCGCCCACGCGTCCGGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCCATTTGGAGGCCGTGTTCGAGAACATCGACAT] [+] EMBL BM586798 [CCGCCCACGCGTCCGGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCCATTTGGAGGCCGTGTTCGAGAACATCGACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5614#0 CCGCCCACGCGTCCGAGAACAAAGTGTTCGAGAAGGCACGCGAACAGGTGATGAAGATGT 60 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 CCGGCGGTCTGTACCCGGCTCCGCTCAAGATTCTGGACGTGATCCGCGTCGGTGTGGACA 120 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 AGGGCCAGGAAGCCGGGTACGAGGCGGAGCGTAAAGGATTTGGCGAACTGTCGCAAACGC 180 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 CCCAGTCGAAGGGTCTGATTGGCCTGTTCCGTGGCCAAACCGAGTGCAAAAAGAATCGCT 240 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 TCGGCAAGCCGGCGAACCCACCGAAAACGATTGGCGTGCTGGGAGCGGGTCTGATGGGTG 300 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 CCGGTATCGTGCAGGTCAGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGG 360 consensus_5614#1 CCGCCCACGCGT---CCGGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGG 57 *** ** * * ****************************************** consensus_5614#0 AGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGC 420 consensus_5614#1 AGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGC 117 ************************************************************ consensus_5614#0 GCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGA 480 consensus_5614#1 GCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGA 177 ************************************************************ consensus_5614#0 GCTACGAACCGTTCCGCCAGACCGATATCGTC-ATT--GAGGCCGTGTTCGAGAACATCG 537 consensus_5614#1 GCTACGAACCGTTCCGCCAGACCGATATCGTCCATTTGGAGGCCGTGTTCGAGAACATCG 237 ******************************** *** ********************** consensus_5614#0 ACATTAAGCACCGCGTCATCAAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCG 597 consensus_5614#1 ACAT-------------------------------------------------------- 241 **** consensus_5614#0 CCACGAACACGTCCGCTATTCCGATCACTAAGATCGCTGCCGGCAGTTCTCGACCGGAGA 657 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 ACGTCGTTGGCATGCACTACTTCTCCCCCGTTGACAAGATGCAACTGTTGGAGATTATTA 717 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 CGCATCCGGGCACGTCCAAGGAGACGGCGGCTGCTGCCGTCGAGGTGGGCCTGCGACAGG 777 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 GCAAGGTGGTCATCACCGTGGGTGACGGACCCGGTTTCTACACGACCCGCATCCTCTCGA 837 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 CCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACA 897 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 AGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTA 957 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 TCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCG 1017 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 GTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGG 1077 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 GCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACG 1137 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 CTCTCGCCATCATGAAGCAGAAGTACGCCCTGCAGTCGCGCGGTGCTAACAGCGTGGAGG 1197 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 ACATGCAGCTGCGCATGGTTTCGCGCTTTGTGAACGAAGCCGTCCTCTGTCTGGAGGAGA 1257 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 AAATCCTGGACAGCCCCCTGGAGGGTGATGTTGGTGCCGTGTTCGGTCTGGGCTTCCCGC 1317 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 CATTCACCGGTGGACCGTTCCGCTGGGTGGACCAGTACGGTGCGGAACGGCTCGTCAGCA 1377 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 AGATGCGCTCGTACGCCGATCTGTACGGTGCTCCGTTCGTGCCGGCCCAAACCCTGCTCG 1437 consensus_5614#1 ------------------------------------------------------------ consensus_5614#0 ACATGGCC 1445 consensus_5614#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||