These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 956 fasta sequence [CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACGAGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTTGTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCAGCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAAGGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC] [+] EMBL BM639837 [CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACGAGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTTGTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCA ] [+] EMBL BM598946 [ ccgCTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTGCATCGCCAACAACAAACGTCCACCGTTCGTCAA CACCATCACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGTCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATCAGCGGCACGATCCAGCTGACCTGTGAGCGATTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTCGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCAGCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCA ] [+] EMBL BM631674 [ ccgGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCAACCCCCGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCCCCGCTGTCGTTCAATTTGCACCGCGGCCAACGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGAAAGATTTGCACACTGGAGGTGAAGGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC] consensusID : consensus_5621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG] [+] EMBL BM587017 [GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5621#0 CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACG 60 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 AGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTT 120 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 GTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATG 180 consensus_5621#1 -------GGAGATAGTTGTGT-GCACCACATACACACACACAGAGGTTGGATTCGTGATG 52 * *** ** ** ************************************** consensus_5621#0 GACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA 240 consensus_5621#1 GACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA 112 *************** ******************************************** consensus_5621#0 CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATG 300 consensus_5621#1 CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG-------- 164 **************************************************** consensus_5621#0 CAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTA 360 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 CTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAAC 420 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 ACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGC 480 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 CTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGT 540 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 GGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGG 600 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 CACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGT 660 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 TGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAA 720 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 GGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCA 780 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 GCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCG 840 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 GCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAA 900 consensus_5621#1 ------------------------------------------------------------ consensus_5621#0 GGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC 956 consensus_5621#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||