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Anopheles gambiae
cluster # 5621 cluster # 5621       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5621#0 length = 956 sequences # 3  
consensus_5621#1 length = 164 sequences # 1  

consensusID : consensus_5621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 956
fasta sequence
                              [CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACGAGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTTGTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCAGCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAAGGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC]

[+] EMBL BM639837             [CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACGAGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTTGTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCA                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM598946             [                                                                                                                                                                                                                                                ccgCTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTGCATCGCCAACAACAAACGTCCACCGTTCGTCAA      CACCATCACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGTCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATCAGCGGCACGATCCAGCTGACCTGTGAGCGATTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTCGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCAGCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCA                                                                     ]
[+] EMBL BM631674             [                                                                                                                                                                                                                                                                ccgGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCAACCCCCGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCCCCGCTGTCGTTCAATTTGCACCGCGGCCAACGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGAAAGATTTGCACACTGGAGGTGAAGGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC]


>consensus_5621#0 CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACG AGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTT GTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATG GACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATG CAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTA CTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAAC ACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGC CTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGT GGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGG CACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGT TGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAA GGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCA GCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCG GCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAA GGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC



consensusID : consensus_5621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence
                              [GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG]

[+] EMBL BM587017             [GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG]


>consensus_5621#1 GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCT GATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGC TAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5621#0      CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACG 60
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      AGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTT 120
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATG 180
consensus_5621#1      -------GGAGATAGTTGTGT-GCACCACATACACACACACAGAGGTTGGATTCGTGATG 52
                             * ***  **   ** **************************************

consensus_5621#0      GACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA 240
consensus_5621#1      GACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA 112
                      *************** ********************************************

consensus_5621#0      CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATG 300
consensus_5621#1      CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG-------- 164
                      ****************************************************        

consensus_5621#0      CAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTA 360
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      CTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAAC 420
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      ACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGC 480
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      CTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGT 540
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGG 600
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      CACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGT 660
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      TGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAA 720
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCA 780
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCG 840
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAA 900
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC 956
consensus_5621#1      --------------------------------------------------------
                                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)