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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 870 fasta sequence
[CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAAAGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCAAGCAACGATTACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGCCAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAAAAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCTGTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCGGAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAACAGGAACAGCAGCAGATGCTGGAGATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTGGAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGAGGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA]
[+] EMBL BM607901 [CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAAAGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCAAGCAACGATTACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGCCAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAAAAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCTGTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCA ]
[+] EMBL BX603706 [ TGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGTGAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAAGCTGTACCGGCCCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCGGAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAACAGGAACAGCAGCAGATGCTGGAGATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTGGAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGAGGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA]
consensusID : consensus_5639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAACAACAATTGCAGCAGCATCAACAGCAACAAATGCAGCAGATGCATCAAGAAAATGCACTTGCTCAACAAAAACAGCAGCATCAGGTGCAGCAATCACAACATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGGCAGAACCTCAGCTGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAACAGAATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAAC]
[+] EMBL BM588321 [CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAACAACAATTGCAGCAGCATCAACAGCAACAAATGCAGCAGATGCATCAAGAAAATGCACTTGCTCAACAAAAACAGCAGCATCAGGTGCAGCAATCACAACATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGGCAGAACCTCAGCTGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAACAGAATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAAC]
consensusID : consensus_5639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCGAAAATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGCCAGAACCTCAACTGCATCAACAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAAC]
[+] EMBL BM605179 [CCGAAAATGTCCAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATCAAATGCAACAATTACAACATCAGCAGGAGCATCAGCAGCAAATATCGCAACAACAGCAACAACCACAACAGCAGCCACAGCCGCCGCAACAGCCAGAACCTCAACTGCATCAACAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAACAGCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAACAACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATAATCACGTAGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5639#1 ----------------CCGGCAACAGCAACAGCAACAGCAGCAACAGCAGCAACAGCAGC 44
consensus_5639#2 ------------------------------------------------------------
consensus_5639#0 CCGCGCAACAACAACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAGCCGCCGC 60
consensus_5639#1 AGCAACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAAC 104
consensus_5639#2 -------CCGAAAATGTC--CAGGAAAATCAACAGCATCTGCAGCACATGCAACAGCATC 51
consensus_5639#0 AGCAACAACAACAACATCTGCAGCAACAGCAGCAGCACCAGCAACAACAAACACAGCAGC 120
* * * ** * * ** ***** * ** ** ****** *
consensus_5639#1 AACAACAATTGCAGCAGCATCAACAGCAACA----AATGCAGCAGATGCATC-AAGAAAA 159
consensus_5639#2 AAATGCAACAATTACAACATCAGCAGGAGCA----TCAGCAGCAAATATCGC-AACAA-- 104
consensus_5639#0 AAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGAGCATTGCCATAGAAGCGTCGAACCAAC 180
** ** * **** * * * ** * * * ** *
consensus_5639#1 TGCACTTGCTCAACAAAAACAGCAGCATCAGGTG-CAGCAATCACAACATGTCCAGGAAA 218
consensus_5639#2 ----------CAGCAACAACCACAACAGCAGCCA-CAGCCGCCGCAACAG---CCAGAAC 150
consensus_5639#0 AACAGTCCGGCAATAACAAAAAGCAAAGTAATAAGCAGCACCACCAGCAGCACGTAAATA 240
** ** ** * * **** ** ** *
consensus_5639#1 ATCA-ACAGCATCTGCAGCACATGCAACAG--------CATCAAATGCAACAATTACAAC 269
consensus_5639#2 CTCA-ACTGCATCAACAGCA---GCAACAG--------CAACAGCAGCAACAACAGCAAC 198
consensus_5639#0 ATCACGTAGAAACGGTGGAAGAAAAGACAGGTACGTCGCAGCAGAATCAAAAGTCCAAAA 300
*** * * * * * **** ** ** *** * **
consensus_5639#1 ATCAGCAGGAGCATCAGCAGCAAATATCG--CAACAACAGCAACAACCACAACAGCAGCC 327
consensus_5639#2 AGCAACAGCAACAGCAACAGCAACAGCTA--CAGCAGCAGCAACAGCAACAGCAGCAGCA 256
consensus_5639#0 AGCAACAAAAGAACAACCATCTAGCTTCGGGTGGGGCCAGCAACGGCCA-AGCAACGATT 359
* ** ** * * * ** * * ******* * * * ** *
consensus_5639#1 AC-AGCCGCCGCAACAGGCAGAACCTCAGC-TGCAGCAACAGCAACAACAGCAACAGCAG 385
consensus_5639#2 GC-AGCAGCAACAGCAGCAGCAGCAACAGC-AACAACAGCAGCAACAACAGCAGATGCAG 314
consensus_5639#0 ACCAGCGAGGAGGAGAGCGAATTCATCATCGTGAAAAAAGAGATGGAGGAAAAGAAGCGC 419
* *** ** * ** * * * ** * * * **
consensus_5639#1 CAACAGCAACAGCAACAGCAGCAACAGCA---GCAACAGCAACAACAGC---AGCAACAG 439
consensus_5639#2 CAACAGCAGATGCAACAGCAACAGCAGCAACCGCAACAACAACAACTGC---AGCAGCAG 371
consensus_5639#0 CAGAAAGAGATGAAAAAGCAACAGCAGGAGGAGCAGAAGCGTAAGCTGGCGGAAGAGAAA 479
** * * * ** **** ** *** * *** * * * * * * * *
consensus_5639#1 AATCAACAGCAACAGCAACAGCTACAGCAGCAGCAACAGCAACAGCAACAGCAGCAAC-- 497
consensus_5639#2 CAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCAACAACAACAACAACAACAACAACAAC-- 429
consensus_5639#0 AAGCTGCTGGAGGAGCTGGAAGCACAAAAGAAAGCAAAGCTGCTGGAGTCTCAGCGCCGT 539
* * * * * *** * * ** * * * * * * ** * *
consensus_5639#1 --AGCAACAGCAA--CAGCAACAGCAGCAACAACAGCAGCAACAA-CAGCAGCAACAACA 552
consensus_5639#2 --AACAACAACAA--CAACAACATCTGCAGCAACAGCAGCAGCAC-CAGCAACAACAAAC 484
consensus_5639#0 GAAGCGATGAAAATTCAAGAGCAGCAACAGCAGCAACAGCAACGCTCGGCCCCTAAGGCT 599
* * * ** ** * ** * ** ** ** ***** * * ** * *
consensus_5639#1 GCAGATGCAGCAACAGCAGATGCAACAGCAACAGCAGCAGCC-GCAA--------CAACA 603
consensus_5639#2 ACAGCAGCAAAAGCAGCCTAAGGAAAATCAAAAAAAGGAGA--GCAT--------TGCCA 534
consensus_5639#0 GTACCGGCGCCATGGTCTGGAGCGATGGCCGAAATTGCAAACAGCAAACTAAGTCTGTCG 659
* ** * * * * * * * * *** *
consensus_5639#1 -ACAACTGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCCGCCGCAGCA---ACAA-CAA 658
consensus_5639#2 TAGAAGCGTCGAACCAACAACAGTC-CGGCAATAACAAAAAGCAAAGTA---ATAAGCAG 590
consensus_5639#0 GAAATCCAGAAAACCGAACGTGCTCTGCTGGCCCGCCGTGAGCACAGCATGCGCGAGCAA 719
* * * * * * * ** * * **
consensus_5639#1 CAACATCTGCAGCAACAGCAGCAGCAC-CAGCAAC------------------------- 692
consensus_5639#2 CACCACCAGCAGCACGTAAATAATCACGTAGAAAC------------------------- 625
consensus_5639#0 CAGGAACAGCAGCAGATGCTGGAG-ATGCAAACGCAGCTGGTAGACGGTCGACTGAAGTG 778
** * * ****** * * * *
consensus_5639#1 ------------------------------------------------------------
consensus_5639#2 ------------------------------------------------------------
consensus_5639#0 GAACGCACAGAACCTAATGCCGGCCAAGGTGAAACCATTGGCTGAGATACAGGCGGAAGA 838
consensus_5639#1 --------------------------------
consensus_5639#2 --------------------------------
consensus_5639#0 GGCCGCTGCGGCTGAAAGGGCCCGCGAGAAGA 870
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||