These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATATGAAAAAAGGGGGGGTGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCCACATCGAGCATGCTGCGGTTGCGGCGCAACTGGAGGCTGAAGAA] [+] EMBL BM633894 [CCGCCCACGCGTCCGCCCACGCGTCCGGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATATGAAAAAAGGGGGGGTGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCCACATCGAGCATGCTGCGGTTGCGGCGCAACTGGAGGCTGAAGAA] consensusID : consensus_564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CCGATTTTGTGTACGAGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATACTGCAAAAGTGGGGGGTGGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCC] [+] EMBL BM621579 [CCGATTTTGTGTACGAGGACAGTCCGGAAACAACTTGGATCAATTTAAGGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAGGCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTCCCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACCTCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAAGAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGCAACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCCAAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAGATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATACTGCAAAAGTGGGGGGTGGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTCGACCGATTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_564#0 CCGCCCACGCGTCCGCCCACGCGTCCG-GGACAGTCCGGAAACAACTTGGATCAATTTAA 59 consensus_564#1 ------------CCGATTTTGTGTACGAGGACAGTCCGGAAACAACTTGGATCAATTTAA 48 *** * ** ** ******************************** consensus_564#0 GGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAG 119 consensus_564#1 GGGGAAAATTACTAACATTTCAGCTTCAAAATGTCGCTCTCGGCGAACATAAGTGTCGAG 108 ************************************************************ consensus_564#0 GCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTC 179 consensus_564#1 GCACCGATAGAAAATCAAATACAGGAGATAGCCTACGATGGTACAGAGATTTATCAGCTC 168 ************************************************************ consensus_564#0 CCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACC 239 consensus_564#1 CCACCGACCCTCTCGGAACATCTGGCAAAGTGTGCCACCAAGATCGACTTCAGCAAAACC 228 ************************************************************ consensus_564#0 TCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAA 299 consensus_564#1 TCCAGCGATATCGATCTGCTGCAGCAATCAATCAAAAAGGAGGATGAAAAGAAGGAGGAA 288 ************************************************************ consensus_564#0 GAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGC 359 consensus_564#1 GAATCGAAAGACCCGAAGGAACAGTTCCAGTCGAGCCTGTGGCCCTGGGACTCGGTACGC 348 ************************************************************ consensus_564#0 AACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCC 419 consensus_564#1 AACAAGCTGAAGGAAGCGCTGACGGAAGTGTGCGTACTGTCGGACGTACTCAACATTGCC 408 ************************************************************ consensus_564#0 AAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAG 479 consensus_564#1 AAGGAAAAGCGCTACATGGTGCTGGATCCTATTCCGCAGGAACCGCCGGAAGTGAAGCAG 468 ************************************************************ consensus_564#0 ATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATA-TGAAAAAA 538 consensus_564#1 ATGGTACTGGTGTACGCACGCAAGAAAGCGCTGGCCAGTGCGGCCAACATACTGCAAAAG 528 *************************************************** ** **** consensus_564#0 GGGGGGGTGG-AGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTC 597 consensus_564#1 TGGGGGGTGGGAGCGGCTGAAAGCGGTCCAGAGCGACCAGGGTGTAAGCCGCTCCAACTC 588 ********* ************************************************* consensus_564#0 GACCGATTTCCACATCGAGCATGCTGCGGTTGCGGCGCAACTGGAGGCTGAAGAA 652 consensus_564#1 GACCGATTTCC-------------------------------------------- 599 *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||