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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1005 fasta sequence
[CCGCGGACGACGGCGTACGACAGCTCGGGAAGGAAAGTGCACCATGCTACGACGAAACGGATCGGCCGGCCAGTATCGGTCACGACAAAGAATGTCCAGACGCCGCCAAGCACAACGACGACCACGACCAGCACGACCACCACGACCGAGCGACCGTCGAGCACGACGGAAAATCTCGTCAAGAAGTATCGCAACTTCCGTGCTACCGAGGCGGGACCTTCCTCGGTCGATGATGATGGTGCTGATGATGGTAGCGGCATTCATCGGAAGCGCCACGGGCACAACAAAACCGGCCATCGGCAGCATCCGGACGGGGAACAGATTGTCCATCCGGACAGTGTGGATCGGTCGGAGCAGCAGCAGCAGCGGCCTGCAAATGGTCAAAGCCGCCGGCGCAGACGAAGGCGTGATCTGGTGTACGATCGGGCGATCAATCATGGCGGCACGGCAATGAACCATTCCAACAATACGTCCGATTCGGTGTCCAGTTTTGAGAACAGCTTGCTTTCCTGCTATGACGGTGATATCCTGTTGGCGCATAGTTTCCCACCGAGCAAATCGTGCCAAAGCGTCCGGGTATCTCGAGGGCGCATCGCATACCGTCACCAAGCACGAAGTGGTGTCGGATGGGTACTACTATTACATCTTCTACAGCGACAACGACTACGTGCAGAACGACATCCACGCGATGTTCGACATCTACAAGCCGACGTTCCAGTACTCGAACATCTCCGACTCGAAGGCGTGCATCAACAGCACGCACTGCTCGTTTCCGATCACCTTCTGGTCGAACGAGCGGGTGATCGTGGAGGTGCCGACGCGCGACGGTATCGAACACGAGGAGGATGATATTACGTTTCTCGTGTCCACGTGCCATCCGCGCATGGCGATCTACATCATCTTCCCCGTCAGTGTGCTGATACTTGTGCTGACGTGTGCCTTCCTGTAAGGTGCAGCTGTGTTCCACTCAGGAGTGTGCTGGTTTGGAGAGTATTGGTTGATTAT]
[+] EMBL BM588417 [CCGCGGACGACGGCGTACGACAGCTCGGGAAGGAAAGTGCACCATGCTACGACGAAACGGATCGGCCGGCCAGTATCGGTCACGACAAAGAATGTCCAGACGCCGCCAAGCACAACGACGACCACGACCAGCACGACCACCACGACCGAGCGACCGTCGAGCACGACGGAAAATCTCGTCAAGAAGTATCGCAACTTCCGTGCTACCGAGGCGGGACCTTCCTCGGTCGATGATGATGGTGCTGATGATGGTAGCGGCATTCATCGGAAGCGCCACGGGCACAACAAAACCGGCCATCGGCAGCATCCGGACGGGGAACAGATTGTCCATCCGGACAGTGTGGATCGGTCGGAGCAGCAGCAGCAGCGGCCTGCAAATGGTCAAAGCCGCCGGCGCAGACGAAGGCGTGATCTGGTGTACGATCGGGCGATCAATCATGGCGGCACGGCAATGAACCATTCCAACAATACGTCCGATTCGGTGTCCAGTTTTGAGAACAGCTTGCTTTCCTGCTATGACGGTGATATCCTGTTGGCGCATAGTTTCCCACCGAGCAAATCGTGCCAAAGCGTCCGGGTATCTCGAGGGCGCATCGCATACCGTCACCAAGCACGAAGTGGTGTCGGATGGGTACTACTATTACATCTTCTACAGCGACAACGACTACGTGCAG ]
[+] EMBL BM643529 [ cCGGGCGATCAATCATGGCGGCACGGCAATGAACCATTCCAACAATACGTCCGATTCGGTGTCCAGTTTCGAGAACAGCTTACTTTCCTGCTATGACGGTGATATCCTGTTGGCGCATAGTTTCCCACCGAGCAAATCGTGCCAAAGCGTCC GGTATCTCGAGGGCGCATCGCATACCGTCACCAAGCACGAGGTGGTGTCGGATGGGTACTACTATTACATCTTCTACAGCGACAACGACTACGTGCAGAACGACATCCACGCGATGTTCGACATCTACAAGCCGACGTTCCAGTACTCGAACATCTCCGACTCGAAGGCGTGCATCAACAGCACGCACTGCTCGTTTCCGATCACCTTCTGGTCGAACGAGCGGGTGATCGTGGAGGTGCCGACGCGCGACGGTATCGAACACGAGGAGGATGATATTACGTTTCTCGTGTCCACGTGCCATCCGCGCATGGCGATCTACATCATCTTCCCCGTCAGTGTGCTGATACTTGTGCTGACGTGTGCCTTCCTGTAAGGTGCAGCTGTGTTCCACTCAGGAGTGTGCTGGTTTGGAGAGTATTGGTTGATTAT]
consensusID : consensus_5640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGGGGCAGCTGTGTTCCACTCAGGAGTGTGCTGGTTTGGAGAGTATTGGTTGATTATGCCTCATTAAGGATAAGGATACAATTCATTCGTTAAAGTGCACCGGCAAGATTTCAAACGCGGTAGCTGATGAAAACTCAACACCAGTAGGTTATTCGAAAAAGAAGGGATTAGCTGCAAACAAAATGTAGTTCATTCGAACTGGTTTTGTATAGAGAGTGTAGCGGAAAGTGCAATAGTTGTAAGATTGCTCCAAAGAATCTTGTTCATTTGCTGAGGATGCAGCGATCGGGATAAAAGTGAGATTATCAGCCAAACTGTTAGCTGCAATGAGTACAACAAATGATTCTGCATACAATAGAATGCATACATGTATATTACTATCCTTTTTTGAGTTCTAGACTTTTACTAGACATCATCAGACAGACGAGATAGATCCACTAAAGGCTAAAGGAAACATATAGAGAGGCGGAAAGAGTTGTAAATTCGATACTAAGCTAGTCGCAAAACAGATGAGTATAGACATTAAAAACAGAGGAATAACAAAACACACAGATGCCCTATGAATCTAGAATCAGGGATAATATGTGGTAAGACAGACGGGAATGAAAATGAACGTAATAATGGTTTTATTTGATAATAATTGAGCAAGCAATTATTATTTGGATTGTTTTTTCGTTTACAGCGCAACATATAGAAGTTAAGTGAATGTAGTTTAGATTGTCCTCTAAATTATTGTATATAATTTTGGCTTTTTTATTCGGGGCTAACAAGAGGCTATTTCTGACATTTTGGTCACTA]
[+] EMBL BM615728 [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAGGGGCAGCTGTGTTCCACTCAGGAGTGTGCTGGTTTGGAGAGTATTGGTTGATTATGCCTCATTAAGGATAAGGATACAATTCATTCGTTAAAGTGCACCGGCAAGATTTCAAACGCGGTAGCTGATGAAAACTCAACACCAGTAGGTTATTCGAAAAAGAAGGGATTAGCTGCAAACAAAATGTAGTTCATTCGAACTGGTTTTGTATAGAGAGTGTAGCGGAAAGTGCAATAGTTGTAAGATTGCTCCAAAGAATCTTGTTCATTTGCTGAGGATGCAGCGATCGGGATAAAAGTGAGATTATCAGCCAAACTGTTAGCTGCAATGAGTACAACAAATGATTCTGCATACAATAGAATGCATACATGTATATTACTATCCTTTTTTGAGTTCTAGACTTTTACTAGACATCATCAGACAGACGAGATAGATCCACTAAAGGCTAAAGGAAACATATAGAGAGGCGGAAAGAGTTGTAAATTCGATACTAAGCTAGTCGC ]
[+] EMBL BX602769 [ TTCATTTGCTGAGGATGCAGCGATCGGGATGAAAGTGAGATTATCAGCCAAACTGTTAGCTGCAATGAGTACAACAAATGATTCTACATACAATAGAATGCATACATGTATATTACTATCCTTTTTTGAGTTCTAGAATTTTACTAGACATCATCAGACAGACGAGATGGATCCACTAAAGGCTAAAAGAAACATATAGAGAGGCGGAAAGAGTTGTAAATTCGATACTAAGCTAGTCGCAAAACAGATGAGTATAGACATTAAAAACAGAGGAATAACAAAACACACAGATGCCCTATGAATCTAGAATCAGGGATAATATGTGGTAAGACAGACGGGAATGAAAATGAACGTAATAATGGTTTTATTTGATAATAATTGAGCAAGCAATTATTATTTGGATTGTTTTTTCGTTTACAGCGCAACATATAGAAGTTAAGTGAATGTAGTTTAGATTGTCCTCTAAATTATTGTATATAATTTTGGCTTTTTTATTCGGGGCTAACAAGAGGCTATTTCTGACATTTTGGTCACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5640#0 CCGCGGACGACGGCGTACGACAGCTCGGGAAGGAAAGTGCACCATGCTACGACGAAACGG 60
consensus_5640#1 ------------------------------------------------------------
consensus_5640#0 ATCGGCCGGCCAGTATCGGTCACGACAAAGAATGTCCAGACGCCGCCAAGCACAAC-GAC 119
consensus_5640#1 -------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGT 29
* *** ** * * * * * *
consensus_5640#0 GACCACGACCAGCACGACCACCACGACCGAGCGACCGTCGAGCACGACGGAAAATCTCG- 178
consensus_5640#1 AAGGGGCAGCTGTGTTCCACTCAGGAGTGTGCTGGTTTGGAGAGTATTGGTTGATTATGC 89
* * * * * ** ** * ** * *** ** ** *
consensus_5640#0 -TCAAGAAGTATCGCAACTTCCGTGCTACCGAGGCGGGACCTTCCTCGGTCGATGATGAT 237
consensus_5640#1 CTCATTAAGGATAAGGATACAATTCATTCGTTAAAGTGCACCGGCAAGATTTCAAACGCG 149
*** *** ** * * * * * * * * * * * *
consensus_5640#0 GGTGCTGATGATGGTAGCGGCATTCATCGGAAGCGCCACGGGCACAACAAAACCGGCCAT 297
consensus_5640#1 GTAGCTGATGAAAACT-CAACACCAGT---AGGTTATTCGAAAAAGAAGGGATTAGCTGC 205
* ******** * ** * * * ** * * * **
consensus_5640#0 CGGCAGCATCCGGACGGGGAACAGATTGTCCATCCGGACAGTGTGGATCGGTCGGAGCAG 357
consensus_5640#1 AAACAAAATGTAGTTCATT--CGAACTGGTTTTGTATAGAGAGTGTAGCGGAAAGTGCAA 263
** ** * * * ** * * ** *** * *** * ***
consensus_5640#0 CAGCAGCAGCGGC-CTGCAAATGGTCAAAGCCGCCGGCGCAGACGAAGGCGTGATCTGGT 416
consensus_5640#1 TAGTTGTAAGATTGCTCCAAAGAATCTTGTTCATT--TGCTGAGGATGCAGCGATCGGGA 321
** * * ** **** ** * ** ** ** * * **** **
consensus_5640#0 GTACGATCGGGCGATCAATCATGGCGGCA-CGGCAATGAACCATTCCAACAATACGTCCG 475
consensus_5640#1 TAAAAGTGAGATTATCAGCCAAACTGTTAGCTGCAATGAGT-------ACAACAAAT--G 372
* * * **** ** * * * ******* **** * * *
consensus_5640#0 ATTCGGTGTCCAGTTTTGAGAACAGCTTGCTTTCCTGCTATGACGGTGATATCCTGTTGG 535
consensus_5640#1 ATTCTGCATACAAT----AGAAT-GCATACATGTATATTACTA------TCCTTTTTTGA 421
**** * * ** * **** ** * * * * ** * * * ***
consensus_5640#0 CGCATAGTTTCCCACCGAGCAAATCGTGCCAAAGCGTCCGGGTATCTCGAGGGCGCATCG 595
consensus_5640#1 GTTCTAGACTTTTACTAGACATCATCAGACAGACGAGATAGATCCACTAAAGGCTAAAGG 481
*** * ** ** * ** * * * * *** * *
consensus_5640#0 CATACCGTCACCAAGCACGAAGTGGTGTCGGATGGGTACTA--CTA-TTACATCTTCTAC 652
consensus_5640#1 AAACATATAGAGAGGCGGAAAGAGTTGTAAATTCGATACTAAGCTAGTCGCAAAACAGAT 541
* * * ** *** * *** * * ***** *** * ** *
consensus_5640#0 AGCGACAACGACTACGTGCAGAACGACATCCACGCGATGTTCGACATCTACAAGCCGACG 712
consensus_5640#1 GAGTATAGACATTAAAAACAGAGGAATAACAAAAC-ACACAGATGCCCTATGAATCTAGA 600
* * * ** **** * * * * * * *** * * *
consensus_5640#0 TTCCAGTACTCGAACATCTCCGACTCGA-AGGCGTGCATCAACA-GCACGCACTGCTCGT 770
consensus_5640#1 ATCAGG-----GATAATATGTGGTAAGACAGACGGGAATGAAAATGAACGTAATAATGGT 655
** * ** ** * * ** ** ** * ** ** * * *** * * * **
consensus_5640#0 TTCCGATCACCTTCTGGTCGAACGAGCGGGTGATCGTGGAGGTGCCGACGCGCG-ACGGT 829
consensus_5640#1 TTT--ATTTGATAATAATTGAGCAAGCAATTATTATTTGGATTGTTTTTTCGTTTACAGC 713
** ** * * * ** * *** * * * * ** ** ** *
consensus_5640#0 ATCGAACACGAGGAGGATGATATTACGTTTCTCGTGTCCACGTGCCATCCGCGCATGGCG 889
consensus_5640#1 GC--AACATATAGAAGTTAAGTGAATGTAGTTTAGATTGTCCTCTAAATTATTGTATATA 771
**** ** * * * * ** * * * * *
consensus_5640#0 ATCTACATCATCTTCCCCGTCAGTGTGCTGATACTTGTGCTGACGTGTGCCTTCCTGTAA 949
consensus_5640#1 ATTTTGGCTTTTTTATTCGGGGCTAACAAGAGGCTATTTCTGACATTTTGGTCACTA--- 828
** * * ** ** * ** ** * ***** * * * **
consensus_5640#0 GGTGCAGCTGTGTTCCACTCAGGAGTGTGCTGGTTTGGAGAGTATTGGTTGATTAT 1005
consensus_5640#1 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||