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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1682 fasta sequence
[TATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCGAGAAGCAAAAGCGAGGTTGCTACCAACACTCACACACATACACACACGGATACACCTTTCTCGGGGTGGCCTACGGTTCTTTTTCGGTGTGTCGACTTGCGGACGGAAAGAGATAGAGTCGCGCTGGTTGGTATACACGACGAGTTGGGTGCGAGAAGCGCAAGCGAGAAAGAGAAGCCCGGGCGACGATGGTGTGGTGCGCCGTTTGTGAATGATGTGCAGTGTGCGTGATGGTGTGTGTGTGACGATCGCCTTCTAGGCAGGTAGGGAAAAGAAGAGGAAGAAGCGGAAGAAGACGGGCGGTGCGGTCGGGTCAGCAGCAATAATATCGGCAGTGACAGGAACAGTAGCAGCAGTGCCAGTGGGGCAAAAGCAACAGCACACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAGGCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAGGCAAAAGAAAACGCGTAAAAAGAAGCCCGAAACAGCAGCGCAAAATTTGCTCCGAACTCCTCCCGGTGTGTGTGTGCTCGGAGAAGAAGACGTGTGCGTGCGTGCGTGTTTGTGTGTATGTGTGCGGTTGGTAGACGGTCGACGTCGTCGTACAAAATTCTAGCGACACCAGTTACTCCTAACGCGCCGTGTGCGCCATTAAAGCCACACTAGCTACACTTCCGCCCGTTTTTCGGTTCCGCCGTGCACGAGTGTTTGTGGAGGACAAGTGCGGTGGCCTGGAAGCACAGCAACCTCGAAGGGACAACAACGCTGATTGCATTTGCTGAGGCAACATCATCAATATTCCGGAACCGTACAGTTCTTCGTTCAGCTTCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTTGCACACACGCT--CACACACACACACGGCCAAGTTTCTGCTCAACACAACTGGGATGTGGATGTGTATGTGTGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGTGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAAAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGTACACTTTTCGCAGTGCAAGCGTCGTTTTGCGCCAGTTCTGTTGTCTGTAGTGTCGGTTTGTCCGAACACCGGAAACACGAAACGGAGAAAAGAAACTTACAACATAAAAAGAAACTGCTTTCACCACACCCGCGTTCACCGTGCAGTGATTTA]
[+] EMBL BM588479 [TATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCGAGAAGCAAAAGCGAGGTTGCTACCAACACTCACACACATACACACACGGATACACCTTTCTCGGGGTGGCCTACGGTTCTTTTTCGGTGTGTCGACTTGCGGACGGAAAGAGATAGAGTCGCGCTGGTTGGTATACACGACGAGTTGGGTGCGAGAAGCGCAAGCGAGAAAGAGAAGCCCGGGCGACGATGGTGTGGTGCGCCGTTTGTGAATGATGTGCAGTGTGCGTGATGGTGTGTGTGTGACGATCGCCTTCTAGGCAGGTAGGGAAAAGAAGAGGAAGAAGCGGAAGAAGACGGGCGGTGCGGTCGGGTCAGCAGCAATAATATCGGCAGTGACAGGAACAGTAGCAGCAGTGCCAGTGGGGCAAAAGCAACAGCACACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAGGCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAG ]
[+] EMBL BM597603 [ ccgCACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAGGCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAGGCAAAAGAAAACGCGTAAAAAGAAGCCCGAAACAGCAGCGCAAAATTTGCTCCGAACTCCTCCCGGTGTGTGTGTGCTCGGAGAAGAAGACGTGTGCGTGCGTGCGTGTTTGTGTGTATGTGTGCGGTTGGTAGACGGTCGACGTCGTCGTACAAAATTCTAGCGACACCAGTTACTCCTAACGCGCCGTGTGCGCCATTAAAGCCACACTAGCTACACTTCCGCCCGTTTTTCGGTTCCGCCGTGCACGAGTGTTTGTGGAGGACAAGTGCGGTGGCCTGGAAGCACAGCAACCTCGAAGGGACAACAACGCTGATTGCATTTGCTGAGGCAACATCATCAATATTCCGGAACCGTACAGTTCTTCGTTCAGCTTCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTTGCACACACGCT CACACACACACACGGCCAAGTTTCTGCTCAACACAACTGGGATGTGGATGTGTATGTGTGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTC ]
[+] EMBL BM633433 [ ccgCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTTGCACACACGCTCACACACACACACACGGGCAAGTTTCTGCTCAACACAACT GGATGTGGATGTGTATGTGTGAGTTGCATGATTCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTTGAACTTCCAAATCTACACTAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGTGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAAAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGTACACTTTTCGCAGTGCAAGCGTCGTTTTGCGCCAGTTCTGTTGTCTGTAGTGTCGGTTTGTCCGAACACCGGAAACACGAAACGGAGAAAAGAAACTTACAACATAAAAAGAAACTGCTTTCACCACACCCGCGTTCACCGTGCAGTGATTTA]
consensusID : consensus_5642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[CCGGTCGAGAAATGGCTACAGTATATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCAAGAAGCAAAAGCGAGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGCGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAATAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGT]
[+] EMBL BM609719 [CCGGTCGAGAAATGGCTACAGTATATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTATCCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGGCAAGAAGCAAAAGCGAGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAAATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCCCCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGCGCCAGAGAGCAACACACGGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCTGTCAGGCCAATAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGTGATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTTTGCAGACTAGTGGTCCCACAGACGGTGCGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5642#0 TATGTGAAGTATTTTTCCTTCTCAAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAA 60
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 GTTATTCGCAAGTGATACACTGACTGATCGTGCGTAAGCGTAAGGTGTTATTTAGCGTAT 120
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 CCGCGTCGGGGCCAGTGCGTAAAAGCTGGCAGCGAAAAAGTTAGTTTTCCTCAGGCAGGG 180
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 CGAGAAGCAAAAGCGAGGTTGCTACCAACACTCACACACATACACACACGGATACACCTT 240
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 TCTCGGGGTGGCCTACGGTTCTTTTTCGGTGTGTCGACTTGCGGACGGAAAGAGATAGAG 300
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 TCGCGCTGGTTGGTATACACGACGAGTTGGGTGCGAGAAGCGCAAGCGAGAAAGAGAAGC 360
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 CCGGGCGACGATGGTGTGGTGCGCCGTTTGTGAATGATGTGCAGTGTGCGTGATGGTGTG 420
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 TGTGTGACGATCGCCTTCTAGGCAGGTAGGGAAAAGAAGAGGAAGAAGCGGAAGAAGACG 480
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 GGCGGTGCGGTCGGGTCAGCAGCAATAATATCGGCAGTGACAGGAACAGTAGCAGCAGTG 540
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 CCAGTGGGGCAAAAGCAACAGCACACGAGCAGTGGAGTAGTGGACGCAGGAGTAGAGGAG 600
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 GCGAAGAAGCGGGAGCAATTGAGGAAGGGCGGAGAACCCCGTCAAGGAAGACGCGGGAAG 660
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 GCAAAAGAAAACGCGTAAAAAGAAGCCCGAAACAGCAGCGCAAAATTTGCTCCGAACTCC 720
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 TCCCGGTGTGTGTGTGCTCGGAGAAGAAGACGTGTGCGTGCGTGCGTGTTTGTGTGTATG 780
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 TGTGCGGTTGGTAGACGGTCGACGTCGTCGTACAAAATTCTAGCGACACCAGTTACTCCT 840
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 AACGCGCCGTGTGCGCCATTAAAGCCACACTAGCTACACTTCCGCCCGTTTTTCGGTTCC 900
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 GCCGTGCACGAGTGTTTGTGGAGGACAAG-TGCGGTGGCCTGGAAGCACAGCAACCTCGA 959
consensus_5642#1 --------------CCGGTCGAGAAATGGCTACAGTATATGTGAAGTATTTTTCCTTCTC 46
** *** * * * * ** **** * * **
consensus_5642#0 AGGGA-CAACAACGCTGATTGCATTTGCTGAGGCAACATCATCAATATTCCGGAACCGTA 1018
consensus_5642#1 AAAAATCGACGATAAATAGTAGTCTTATCGGGCGAAAGTTATTCGCAAGTGATACACTGA 106
* * * ** * * * ** * * ** * ** * * * *
consensus_5642#0 CAGTTCTTCGTTCAGCTTCATTCCTTCGTCCAGGAAGGCCTGCAAAACTGCGCAAACTTT 1078
consensus_5642#1 CTGATCGTGCGTAAGCGTAAGGTGTT-ATTTAGCGTATCC------GCGTCGGGGCCAGT 159
* * ** * * *** * * ** * ** ** * ** * *
consensus_5642#0 GCACACACGCTCACACACACACACGGCCAAGTTTCTGCTCAACACAACTGGGATGTGGAT 1138
consensus_5642#1 GCGTAAAAGCTGGCA-------GCGAAAAAGTTAGTTTTC--CTCAGGCAGGGCA-AGAA 209
** * * *** ** ** ***** * ** * ** ** **
consensus_5642#0 GTGTATGTGTGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAA 1198
consensus_5642#1 GCAAAAGCGAGAGTTGCATGATCCGCGTACCCAGGAGGAGAGATATTGGCAAAAAATAAA 269
* * * * **************************************************
consensus_5642#0 ATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCC 1258
consensus_5642#1 ATAAATCATCAGTCTCGAACTTCCAAATCTACACCAGTGCGCTGTGATTAATCCCCGTCC 329
************************************************************
consensus_5642#0 CCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGTGCCAGAGAGCAACACAC 1318
consensus_5642#1 CCTTCTAGAAGAGCGAAACTGCAAACACACGCACACTACCAGCGCCAGAGAGCAACACAC 389
****************************************** *****************
consensus_5642#0 GGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCT 1378
consensus_5642#1 GGACAGACCGGGTGTACACAGCTATACGGTGGCGCTCGTTCGTAGCACGGCTTCTCAGCT 449
************************************************************
consensus_5642#0 GTCAGGCCAA-AGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGT 1437
consensus_5642#1 GTCAGGCCAATAGGGGTTGCATAATTGCAGCGCGATTTATTCGACGCGCAAAGAAATTGT 509
********** *************************************************
consensus_5642#0 GATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTT 1497
consensus_5642#1 GATCGTTGCGCCGAGCAGCAGTGGCTCGCGTAGTTGCTGCGGGGACGGTACAGAACGGTT 569
************************************************************
consensus_5642#0 TGCAGACTAGTGGTCCCACAGACGGTGCGCGTACACTTTTCGCAGTGCAAGCGTCGTTTT 1557
consensus_5642#1 TGCAGACTAGTGGTCCCACAGACGGTGCGCGT---------------------------- 601
********************************
consensus_5642#0 GCGCCAGTTCTGTTGTCTGTAGTGTCGGTTTGTCCGAACACCGGAAACACGAAACGGAGA 1617
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 AAAGAAACTTACAACATAAAAAGAAACTGCTTTCACCACACCCGCGTTCACCGTGCAGTG 1677
consensus_5642#1 ------------------------------------------------------------
consensus_5642#0 ATTTA 1682
consensus_5642#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||