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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1915 fasta sequence
[TGTTCAATAGAGGATCATTTATTAACAACTCCGTAACTTCCTACACGATCGTGAGCTCTTCCTATGCAGTTCCATAAAATTCCCTTATCGTTGTGTGGTACAAAGGCTCGCCTTTAAGAATTTGCGAATTTGAACCTGTTATTCGCACCGCAACGTAATCCCCAACGCCCAACGGTCGGACATCGTCACGATCAGCCGCCCGGTCGGACCGAACCTGTCCGGCAGGAACAATAACCTTCACGTTTCCATCATTACGACCGGCAAGATCGGTTCGCGATCGTTTGCTGTAACCCTCGATCAGCACAAGCTCCGTTCGATCAACAAACAAACTGTTTAGCCGTTCCGCTTCCCTCCGGAAAGCTGCAATCATCCGGCGCAAACGCTCCTGCTTCACTTCCTCCGGTATGTCGTCACTGTACCGCCGGTGGGCCGTAGTTTTCTCGCGCATACTGTACGCAAACAGGAACGCAGCATGGTAGCCCACCTGCTCGATGAGCGATACCGTGTCGGCAAACTCGGGCTCGCTTTCACCGCAGAAGCCGCAGATAAAGTCGCTGGAAAGCGTTACGTTCGTGATGATGCGGCGCACTTCCCCTACCAGGTTTAGGTATGCTTCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTGTTACCGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTTGCAATCGTTTCCAGCACATCCACCGGGAAGTCCTTTGGGTGGGGTGACGTGAAACGGATCCTCATCTCGGGGACCGCTTCCGCCAGCTCGGTCAGCAGCTCGGCAAACCGTAATCCCCCGACCTTACTTTTGTACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGCGCATCCTCCAACGATCCGTCGCTCGTGTCACGATAGCTGTTAACATTCTGTCCGAGCAACGTTATTTCCCTAATGCCTTCATTTTCCAGCTGCAACACTTCCTCGCGGATGGATTTGATCGGTCGGGACCGTTCCTTGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCACGCATGATGGAAACGAACGCGGTCTTCGATTTACGGTCCAGCTTTACCGGCACCACGTCGGCGTACGTTTCGTCGAGCGAAAGTAGCACATTGATCGCTTTCTGTCCCCGTTGGCCGATCGCCAGCAGGCGGGGCAAATCCTTGTACGCATCCGGTCCGGCCACCACATCGACGGAGTGCTCCTTCTCTACCAGCTGCTTCTTCAACCGTTCCGCCATACAGCCCAGCACCCCGATCTGTAACGGTTTTTCGCCGTTCGTCTGCAAGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTGCTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTTCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGACGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGCTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCCCGCTTCTGCAAACTGCTCGATGATGCGGTGCGCACACACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAAAGTGTTCATTGTATTTTCTTTAAAATGCCTAAAACACTGTTTTCATCCAATTCACCTATTTGTCGTTAAATTAAACTTATTTGAACCACTTTACACACTAATTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTTATGC]
[+] EMBL CNS09MWX [TGTTCAATAGAGGATCATTTATTAACAACTCCGTAACTTCCTACACGATCGTGAGCTCTTCCTATGCAGTTCCATAAAATTCCCTTATCGTTGTGTGGTACAAAGGCTCGCCTTTAAGAATTTGCGAATTTGAACCTGTTATTCGCACCGCAACGTAATCCCCAACGCCCAACGGTCGGACATCGTCACGATCAGCCGCCCGGTCGGACCGAACCTGTCCGGCAGGAACAATAACCTTCACGTTTCCATCATTACGACCGGCAAGATCGGTTCGCGATCGTTTGCTGTAACCCTCGATCAGCACAAGCTCCGTTCGATCAACAAACAAACTGTTTAGCCGTTCCGCTTCCCTCCGGAAAGCTGCAATCATCCGGCGCAAACGCTCCTGCTTCACTTCCTCCGGTATGTCGTCACTGTACCGCCGGTGGGCCGTAGTTTTCTCGCGCATACTGTACGCAAACAGGAACGCAGCATGGTAGCCCACCTGCTCGATGAGCGATACCGTGTCGGCAAACTCGGGCTCGCTTTCACCGCAGAAGCCGCAGATAAAGTCGCTGGAAAGCGTTACGTTCGTGATGATGCGGCGCACTTCCCCTACCAGGTTTAGGTATGCTTCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTGTTACCGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTTGCAATCGTTTCCAGCACATCCACCGGGAAGTCCTTTGGGTGGGGTGACGTGAAACGGATCCTCATCTCGGGGACCGCTTCCGCCAGCTCGGTCAGCAGCTCGGCAAACCGTAATCCCCCGACCTTACTTTTGTACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGCGCATCCTCCAACGATCCGTCGCTCGTGTCACGATAGCTGTTAACATTCTGTCCGAGCAACGTTATTT ]
[-] EMBL BX606617 [ CGTTACGTTCGGTATGATGCGGCGCACTTCCTTAACTAGGTTTAGGTATGCTCCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTATTGCCGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTCCCAATCGTTTCCAGCACATCCACCGGGAAGTCCTTTGGGTGAGGTGACGTGAAACGGATCCTCATCTCGGGAACCGCTTCCGCCAGCTCTGTTAGCAGCTCGGCAAACCGTAATCCCCCGACCTTGCTTTTGTACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGGGCATCCTCCAACGATCCGTCGCTCGTGTCACGATAGCTGTTAACGTTCTGCCCGAGCAACGTTATTTCCCTAATGCCTTCATTTTCCAGCTGCAACACTTCCTCGCGGATGGATTTGATCGGTCGGGACCGTTCCTTGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCA ]
[-] EMBL CNS09MWW [ GACCGTTCCTTGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCACGCATGATGGAAACGAACGCGGTCTTCGATTTACGGTCCAGCTTTACCGGCACCACGTCGGCGTACGTTTCGTCGAGCGAAAGTAGCACATTGATCGCTTTCTGTCCCCGTTGGCCGATCGCCAGCAGGCGGGGCAAATCCTTGTACGCATCCGGTCCGGCCACCACATCGACGGAGTGCTCCTTCTCTACCAGCTGCTTCTTCAACCGTTCCGCCATACAGCCCAGCACCCCGATCTGTAACGGTTTTTCGCCGTTCGTCTGCAAGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTGCTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTTCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGACGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGCTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCCCGCTTCTGCAAACTGCTCGATGATGCGGTGCGCACACACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAAAGTGTTCATTGTATTTTCTTTAAAATGCCTAAAACACTGTTTTCATCCAATTCACCTATTTGTCGTTAAATTAAACTTATTTGAACCACTTTACACACTAATTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTTATGC]
consensusID : consensus_5644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[CGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTACTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTCCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGATGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGTTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCTCGCTTCTGCAAACTGCTCGATGATGTGGTGCGCACGCACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAATGTGTTCATTCTACCTATTTTTCGTTAAATTAAACTTATTTTAACCACTCTACACACTATTTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTGGATGCGGCTTTTGGTCGG]
[-] EMBL BM588548 [CGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACCGTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTCAGATTCACCGTTCGGTGGTACTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCGTTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTCCGTTTCTGTCCCCGGAGCGTTTCGGGGGCGATGTACGGGATGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTTTCCGTTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCTCGCTTCTGCAAACTGCTCGATGATGTGGTGCGCACGCACGTCCTGTGTGGTAATATCCTTCGACCCAATCGGACTAGTATCGAATTTCTTGCTAATGTGTTCATTCTACCTATTTTTCGTTAAATTAAACTTATTTTAACCACTCTACACACTATTTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTGGATGCGGCTTTTGGTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5644#0 TGTTCAATAGAGGATCATTTATTAACAACTCCGTAACTTCCTACACGATCGTGAGCTCTT 60
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CCTATGCAGTTCCATAAAATTCCCTTATCGTTGTGTGGTACAAAGGCTCGCCTTTAAGAA 120
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 TTTGCGAATTTGAACCTGTTATTCGCACCGCAACGTAATCCCCAACGCCCAACGGTCGGA 180
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CATCGTCACGATCAGCCGCCCGGTCGGACCGAACCTGTCCGGCAGGAACAATAACCTTCA 240
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CGTTTCCATCATTACGACCGGCAAGATCGGTTCGCGATCGTTTGCTGTAACCCTCGATCA 300
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 GCACAAGCTCCGTTCGATCAACAAACAAACTGTTTAGCCGTTCCGCTTCCCTCCGGAAAG 360
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CTGCAATCATCCGGCGCAAACGCTCCTGCTTCACTTCCTCCGGTATGTCGTCACTGTACC 420
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 GCCGGTGGGCCGTAGTTTTCTCGCGCATACTGTACGCAAACAGGAACGCAGCATGGTAGC 480
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CCACCTGCTCGATGAGCGATACCGTGTCGGCAAACTCGGGCTCGCTTTCACCGCAGAAGC 540
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CGCAGATAAAGTCGCTGGAAAGCGTTACGTTCGTGATGATGCGGCGCACTTCCCCTACCA 600
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 GGTTTAGGTATGCTTCCCGCGTGTAACCACGTCTCATGCGCTCCAGCACCTGCGTGTTAC 660
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CGGACTGTGCCGGTAAATGCAGGCTGTTGCATATGTTCGGATACTTTGCAATCGTTTCCA 720
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 GCACATCCACCGGGAAGTCCTTTGGGTGGGGTGACGTGAAACGGATCCTCATCTCGGGGA 780
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CCGCTTCCGCCAGCTCGGTCAGCAGCTCGGCAAACCGTAATCCCCCGACCTTACTTTTGT 840
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 ACACGGTGCGGAACCCGGGCGCCAACAGCGTTGCCTCCTTGGGCGCATCCTCCAACGATC 900
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CGTCGCTCGTGTCACGATAGCTGTTAACATTCTGTCCGAGCAACGTTATTTCCCTAATGC 960
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CTTCATTTTCCAGCTGCAACACTTCCTCGCGGATGGATTTGATCGGTCGGGACCGTTCCT 1020
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 TGCCGCGGGTAAAGGGAACGATACAGTACGAGCACATGTTGTCGCATCCACGCATGATGG 1080
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 AAACGAACGCGGTCTTCGATTTACGGTCCAGCTTTACCGGCACCACGTCGGCGTACGTTT 1140
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CGTCGAGCGAAAGTAGCACATTGATCGCTTTCTGTCCCCGTTGGCCGATCGCCAGCAGGC 1200
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 GGGGCAAATCCTTGTACGCATCCGGTCCGGCCACCACATCGACGGAGTGCTCCTTCTCTA 1260
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CCAGCTGCTTCTTCAACCGTTCCGCCATACAGCCCAGCACCCCGATCTGTAACGGTTTTT 1320
consensus_5644#1 ------------------------------------------------------------
consensus_5644#0 CGCCGTTCGTCTGCAAGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACC 1380
consensus_5644#1 ---------------CGCTTGCGCTTCAGCAGCCGCAAATGTTTCAACCGATTCCAGACC 45
********************************************
consensus_5644#0 GTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTC 1440
consensus_5644#1 GTATCTTCCGCGCCTTCCCGGATGGCGCACGTCATCATGAGCACGATGTCGGCTTCCTTC 105
************************************************************
consensus_5644#0 AGATTCACCGTTCGGTGGTGCTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCG 1500
consensus_5644#1 AGATTCACCGTTCGGTGGTACTGGTGCGCTTTCAGTATCGACCAAACGATCTCCGTATCG 165
******************* ****************************************
consensus_5644#0 TTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTTCGTTTCTGTCCCCGGAGC 1560
consensus_5644#1 TTGGTGTTCATCTGGCAGCCGTACACTTCGAGGAAAACCTTCCGTTTCTGTCCCCGGAGC 225
***************************************** ******************
consensus_5644#0 GTTTCGGGGGCGATGTACGGGACGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTT 1620
consensus_5644#1 GTTTCGGGGGCGATGTACGGGATGGGTTTGCCCCGGTCCGCAATGTAGACGGTGGAGGTT 285
********************** *************************************
consensus_5644#0 TCCGCTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCC 1680
consensus_5644#1 TCCGTTTCCGTTGTTCCACGCAGGAAATCTTGCAACGAAGGGCCTTCCTTGAGCTGTTCT 345
**** ******************************************************
consensus_5644#0 CGCTTCTGCAAACTGCTCGATGATGCGGTGCGCACACACGTCCTGTGTGGTAATATCCTT 1740
consensus_5644#1 CGCTTCTGCAAACTGCTCGATGATGTGGTGCGCACGCACGTCCTGTGTGGTAATATCCTT 405
************************* ********* ************************
consensus_5644#0 CGACCCAATCGGACTAGTATCGAATTTCTTGCTAAAGTGTTCATTGTATTTTCTTTAAAA 1800
consensus_5644#1 CGACCCAATCGGACTAGTATCGAATTTCTTGCTAATGTGTTCATTCTA------------ 453
*********************************** ********* **
consensus_5644#0 TGCCTAAAACACTGTTTTCATCCAATTCACCTATTTGTCGTTAAATTAAACTTATTTGAA 1860
consensus_5644#1 -----------------------------CCTATTTTTCGTTAAATTAAACTTATTTTAA 484
******* ******************** **
consensus_5644#0 CCACTTTACACACTAATTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTT-ATGC---- 1915
consensus_5644#1 CCACTCTACACACTATTTTAATCTTTTCTGTGGGAAAATCGATGGTTTTTGGATGCGGCT 544
***** ********* ********************************** ****
consensus_5644#0 ---------
consensus_5644#1 TTTGGTCGG 553
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||