These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1544 fasta sequence [CCGCGGACGCGTGGGCGTGTGGTCGAGAGCCCCCACGCATTGATGCGTTGTGAATATCTCTTGTCTCAACAACACTCCGTTTTCTGTCCGTGTGCGTGCGTTTACATTTGTGGAAATGACCCATCAATAGGGTATATTCTAAAAGTGCATGTATACGAGAGCGTGTGAGGGCGCGTTTGTGTGTGTGTGTGTGCAAGAAACAATTTTTTGAAATCCAGCTAGTTTTCAATTTTTCTTTTTCTTGTTACAGCTGTAAGAAGGAGAAGAACAAAAAAAATCAACGAGTGTATGTGTGTACACGTAGCGTGTTTGTATGCGCGCGGAATCAATCAATAGACATTTTGTTTAGTGTGGAAAGTAGAGCTTCTCTTGCGTGTGTGTGTGTGTAGTGGCCGTGTTTTCGAGTTTTGGGACAAAAAACACCACCACCGCCGAACCCTCTGACACAACCGAAAAGGGTGTAAAGTGCATCAACCATCAAGCAGGTTCTTCCACGCACAGTCAATCAACCTTTTCCCGGG-ATTATCATCAATCGAAAAACGGCTTGGCAGTCGATCGCGCCCGCCTGTTGAAGCAGCATGAGTTATCAGATGCCGCAAAACAGATCAATGTCTCATAACCCGTACAATTCGTCGGACATGCCGATGCCCTCAGCAAAGGAGCAAACACTGATGTGGCAGCAAAACTCGTACCTCGGCGACTCCGGCATCCATTCTGGTGCCGTTACCCAGGTGCCGTCGCTTAGCGGTAAGGATGACGACATGGAGGACGATCCGCTGATGTTCGACATGGACCAGGGTTTCTCGCAGAATTTTACGCAGGACCAGGTCGATGATATGAATCAGCAACTGAGTCAGACGCGCTCACAGCGCGTCCGAGCTGCGATGTTCCCGGAGACACTCGAGGAAGGCATCGAGATTCCGTCGACACAGTTCGACCCGCAGCAGCCCACCGCGGTGCAGCGGCTGGCCGAACCGTCCCAGATGCTGAAGCACGCGGTCGTCAACCTGATTAACTATCAGGACGATGCGGATCTGGCGACCAGAGCCATCCCCGAACTGATCAAGCTGCTGAACGACGAGGACCAGGTGGTGGTTTCGCAGGCCGCCATGATGGTGCACCAACTGTCCAAAAAGGAAGCGTCCCGGCATGCGATAATGAACAGTCCGCAGATGGTGGCCGCTCTCGTCCGTGCGCTCTCCAACTCGAACGATCTCGAGACAACCAAAGGTGCGGTCGGCACACTGCACAACTTGTCGCACCATCGCCAGGGTCTGCTCGCGATCTTCAAGTCGGGTGGAATACCGGCACTGGTAAAGCTGTTGTCTTCGCCGGTCGAGTCGGTGTTGTTCTACGCAATCACCACGCTGCACAACCTGCTGCTGCACCAGGATGGCAGCAAGATGGCGGTCCGTCTGGCTGGCGGACTGCAGAAGATGGTTGCCCTGCTCCAGCGCAACAACGTCAAGTTTCTTGCCATCGTCACGGACTGTCTACAGATTCTGGCATACGGCAACCAAGAGAGCAAGCTGATCATACTCGCG] [+] EMBL BM606288 [CCGCGGACGCGTGGGCGTGTGGTCGAGAGCCCCCACGCATTGATGCGTTGTGAATATCTCTTGTCTCAACAACACTCCGTTTTCTGTCCGTGTGCGTGCGTTTACATTTGTGGAAATGACCCATCAATAGGGTATATTCTAAAAGTGCATGTATACGAGAGCGTGTGAGGGCGCGTTTGTGTGTGTGTGTGTGCAAGAAACAATTTTTTGAAATCCAGCTAGTTTTCAATTTTTCTTTTTCTTGTTACAGCTGTAAGAAGGAGAAGAACAAAAAAAATCAACGAGTGTATGTGTGTACACGTAGCGTGTTTGTATGCGCGCGGAATCAATCAATAGACATTTTGTTTAGTGTGGAAAGTAGAGCTTCTCTTGCGTGTGTGTGTGTGTAGTGGCCGTGTTTTCGAGTTTTGGGACAAAAAACACCACCACCGCCGAACCCTCTGACACAACCGAAAAGGGTGTAAAGTGCATCAACCATCAAGCAGGTTCTTCCACGCACAGTCAATCAACCTTTTCCCGGGAATTATCATCAATCGAAAAACGGCTTGGCAGTCGATCGCGCCCGCCTGTTGAAGCAGCATGAGTTATCAGATGCCGCAAAACAGATCAATGTCTCATAACCCGTACAATTCGTCGGACATGCCGATGCCCTCAGCAAAGGAGCAAA ] [+] EMBL BM654879 [ ccgCAAAAAACACCACCACCGCCGAACCCTCTGACACAACCGAAAAGGGTGTAAAGTGCATCAACCATCAAGCAGGTTCTTCCACGCACAGTCAATCAACCTTTTCCCGGG ATTATCATCAATCGAAAAACGGCTTGGCAGTCGATCGCGCCCGCCTGTTGAAGCAGCATGAGTTATCAGATGCCGCAAAACAGATCAATGTCTCATAACCCGTACAATTCGTCGGACATGCCGATGCCCTCAGCAAAGGAGCAAACACTGATGTGGCAGCAAAACTCGTACCTCGGCGACTCCGGCATCCATTCTGGTGCCGTTACCCAGGTGCCGTCGCTTAGCGGTAAGGATGACGACATGGAGGACGATCCGCTGATGTTCGACATGGACCAGGGTTTCTCGCAGAATTTTACGCAGGACCAGGTCGATGATATGAATCAGCAACTGAGTCAGACGCGCTCACAGCGCGTCCGAGCTGCGATGTTCCCGGAGACACTCGAGGAAGGCATCGAGATTCCGTCGACACAGTTCGACCCGCAGCAGCCCACCG ] [+] EMBL BM648024 [ ccgGAATCAGCAACTGAGTCAGACGCGCTCACAGCGCGTCCGAGCTGCGATGTTCCCGGAGACACTCGAGGAAGGCATCGAGATTCCGTCGACACAGTTCGACCCGCAGCAGCCCACCGCGGTGCAGCGGCTGGCCGAACCGTCCCAGATGCTGAAGCACGCGGTCGTCAACCTGATTAACTATCAGGACGATGCGGATCTGGCGACCAGAGCCATCCCCGAACTGATCAAGCTGCTGAACGACGAGGACCAGGTGGTGGTTTCGCAGGCCGCCATGATGGTGCACCAACTGTCCAAAAAGGAAGCGTCCCGGCATGCGATAATGAACAGTCCGCAGATGGTGGCCGCTCTCGTCCGTGCGCTCTCCAACTCGAACGATCTCGAGACAACCAAAGGTGCGGTCGGCACACTGCACAACTTGTCGCACCATCGCCAGGGTCTGCTCGCGATCTTCAAGTCGGGTGGAATACCGGCACTGGTAAAGCTGTTGTCTTCGCCGGTCGAGTCGGTGTTGTTCTACGCAATCACCACGCTGCACAACCTGCTGCTGCACCAGGATGGCAGCAAGATGGCGGTCCGTCTGGCTGGCGGACTGCAGAAGATGGTTGCCCTGCTCCAGCGCAACAACGTCAAGTTTCTTGCCATCGTCACGGACTGTCTACAGATTCTGGCATACGGCAACCAAGAGAGCAAGCTGATCATACTCGCG] consensusID : consensus_5653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGCTTACGTGTGGTCGAGAGCCCCCACGCATTGATGCGTTGTGAATATCTCTTGTCTCAACAACACTCCGTTTTCTGTCCGTGTGCGTGCGTTTACATTTGTGCTGTAAGAAGGAGAAGAACAAAAAAAATCAACGAGTGTATGTGTGTACACGTAGCGTGTTTGTATGCGCGCGGAATCAATCAATAGACATTTTGTTTAGTGTGGAAAGTAGAGCTTCTCTTGCGTGTGTGTGTGTGTAGTGGCCGTGTTTTCGAGTTTTGGGACAAAAAACACCACCACCGCCGAACCCTCTGACACAACCGAAAAGGGTGTAAAGTGCATCAACCATCAAGCAGGTTCTTCCACGCACAGTCAATCAACCTTTTCCCGGGATTATCATCAATCGAAAAACGGCTTGGCAGTCGATCGCGCCCGCCTGTTGAAGCAGCATGAGTTATCAGATGCCGCAAAACAGATCAATGTCTCATAACCCGTACAATTCGTCGGACATGCCGATGCCCTCAGCAAAGGAGCAAACACTGATGTGGCAGCAAAACTCGTACCTCGGCGACTCCGGCATCCATTTCTGGTGCCGTTACCCAGGTGCCGTCGCTTAGCGGTAAGGATGACGACATGGAGGACGATCCGCTGATGATCGACATGGACCAGGGGT] [+] EMBL BM589668 [CCGCTTACGTGTGGTCGAGAGCCCCCACGCATTGATGCGTTGTGAATATCTCTTGTCTCAACAACACTCCGTTTTCTGTCCGTGTGCGTGCGTTTACATTTGTGCTGTAAGAAGGAGAAGAACAAAAAAAATCAACGAGTGTATGTGTGTACACGTAGCGTGTTTGTATGCGCGCGGAATCAATCAATAGACATTTTGTTTAGTGTGGAAAGTAGAGCTTCTCTTGCGTGTGTGTGTGTGTAGTGGCCGTGTTTTCGAGTTTTGGGACAAAAAACACCACCACCGCCGAACCCTCTGACACAACCGAAAAGGGTGTAAAGTGCATCAACCATCAAGCAGGTTCTTCCACGCACAGTCAATCAACCTTTTCCCGGGATTATCATCAATCGAAAAACGGCTTGGCAGTCGATCGCGCCCGCCTGTTGAAGCAGCATGAGTTATCAGATGCCGCAAAACAGATCAATGTCTCATAACCCGTACAATTCGTCGGACATGCCGATGCCCTCAGCAAAGGAGCAAACACTGATGTGGCAGCAAAACTCGTACCTCGGCGACTCCGGCATCCATTTCTGGTGCCGTTACCCAGGTGCCGTCGCTTAGCGGTAAGGATGACGACATGGAGGACGATCCGCTGATGATCGACATGGACCAGGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5653#0 CCGCGGACGCGTGGGCGTGTGGTCGAGAGCCCCCACGCATTGATGCGTTGTGAATATCTC 60 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 TTGTCTCAACAACACTCCGTTTTCTGTCCGTGTGCGTGCGTTTACATTTGTGGAAATGAC 120 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 CCATCAATAGGGTATATTCTAAAAGTGCATGTATACGAGAGCGTGTGAGGGCGCGTTTGT 180 consensus_5653#1 ----------------------------CCGCTTACGTG--TGGTCGAGAGCCCCCACGC 30 * **** * * *** ** * * consensus_5653#0 GTGTGTGTGTGTGCAAGAAACAATTTTTTGAAATCCAGCTAGTTTTCAATTTTTCTTTTT 240 consensus_5653#1 ATTGATGCGT-TGTGAATATCTCTTGTCTCAACAACACTCCGTTTTCTGTCCGTGTGCGT 89 * ** ** ** * * * ** * * ** ** ****** * * * * consensus_5653#0 CTTGTTACA-----GCTGTAAGAAGGAGAAGAACAAAAAAAATCAACGAGTGTATGTGTG 295 consensus_5653#1 GCGTTTACATTTGTGCTGTAAGAAGGAGAAGAACAAAAAAAATCAACGAGTGTATGTGTG 149 ***** ********************************************** consensus_5653#0 TACACGTAGCGTGTTTGTATGCGCGCGGAATCAATCAATAGACATTTTGTTTAGTGTGGA 355 consensus_5653#1 TACACGTAGCGTGTTTGTATGCGCGCGGAATCAATCAATAGACATTTTGTTTAGTGTGGA 209 ************************************************************ consensus_5653#0 AAGTAGAGCTTCTCTTGCGTGTGTGTGTGTGTAGTGGCCGTGTTTTCGAGTTTTGGGACA 415 consensus_5653#1 AAGTAGAGCTTCTCTTGCGTGTGTGTGTGTGTAGTGGCCGTGTTTTCGAGTTTTGGGACA 269 ************************************************************ consensus_5653#0 AAAAACACCACCACCGCCGAACCCTCTGACACAACCGAAAAGGGTGTAAAGTGCATCAAC 475 consensus_5653#1 AAAAACACCACCACCGCCGAACCCTCTGACACAACCGAAAAGGGTGTAAAGTGCATCAAC 329 ************************************************************ consensus_5653#0 CATCAAGCAGGTTCTTCCACGCACAGTCAATCAACCTTTTCCCGGGATTATCATCAATCG 535 consensus_5653#1 CATCAAGCAGGTTCTTCCACGCACAGTCAATCAACCTTTTCCCGGGATTATCATCAATCG 389 ************************************************************ consensus_5653#0 AAAAACGGCTTGGCAGTCGATCGCGCCCGCCTGTTGAAGCAGCATGAGTTATCAGATGCC 595 consensus_5653#1 AAAAACGGCTTGGCAGTCGATCGCGCCCGCCTGTTGAAGCAGCATGAGTTATCAGATGCC 449 ************************************************************ consensus_5653#0 GCAAAACAGATCAATGTCTCATAACCCGTACAATTCGTCGGACATGCCGATGCCCTCAGC 655 consensus_5653#1 GCAAAACAGATCAATGTCTCATAACCCGTACAATTCGTCGGACATGCCGATGCCCTCAGC 509 ************************************************************ consensus_5653#0 AAAGGAGCAAACACTGATGTGGCAGCAAAACTCGTACCTCGGCGACTCCGGCATCCATT- 714 consensus_5653#1 AAAGGAGCAAACACTGATGTGGCAGCAAAACTCGTACCTCGGCGACTCCGGCATCCATTT 569 *********************************************************** consensus_5653#0 CTGGTGCCGTTACCCAGGTGCCGTCGCTTAGCGGTAAGGATGACGACATGGAGGACGATC 774 consensus_5653#1 CTGGTGCCGTTACCCAGGTGCCGTCGCTTAGCGGTAAGGATGACGACATGGAGGACGATC 629 ************************************************************ consensus_5653#0 CGCTGATGTTCGACATGGACCAGGGTTTCTCGCAGAATTTTACGCAGGACCAGGTCGATG 834 consensus_5653#1 CGCTGATGATCGACATGGACCAGGGGT--------------------------------- 656 ******** **************** * consensus_5653#0 ATATGAATCAGCAACTGAGTCAGACGCGCTCACAGCGCGTCCGAGCTGCGATGTTCCCGG 894 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 AGACACTCGAGGAAGGCATCGAGATTCCGTCGACACAGTTCGACCCGCAGCAGCCCACCG 954 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 CGGTGCAGCGGCTGGCCGAACCGTCCCAGATGCTGAAGCACGCGGTCGTCAACCTGATTA 1014 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 ACTATCAGGACGATGCGGATCTGGCGACCAGAGCCATCCCCGAACTGATCAAGCTGCTGA 1074 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 ACGACGAGGACCAGGTGGTGGTTTCGCAGGCCGCCATGATGGTGCACCAACTGTCCAAAA 1134 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 AGGAAGCGTCCCGGCATGCGATAATGAACAGTCCGCAGATGGTGGCCGCTCTCGTCCGTG 1194 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 CGCTCTCCAACTCGAACGATCTCGAGACAACCAAAGGTGCGGTCGGCACACTGCACAACT 1254 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 TGTCGCACCATCGCCAGGGTCTGCTCGCGATCTTCAAGTCGGGTGGAATACCGGCACTGG 1314 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 TAAAGCTGTTGTCTTCGCCGGTCGAGTCGGTGTTGTTCTACGCAATCACCACGCTGCACA 1374 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 ACCTGCTGCTGCACCAGGATGGCAGCAAGATGGCGGTCCGTCTGGCTGGCGGACTGCAGA 1434 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 AGATGGTTGCCCTGCTCCAGCGCAACAACGTCAAGTTTCTTGCCATCGTCACGGACTGTC 1494 consensus_5653#1 ------------------------------------------------------------ consensus_5653#0 TACAGATTCTGGCATACGGCAACCAAGAGAGCAAGCTGATCATACTCGCG 1544 consensus_5653#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||