These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 991 fasta sequence [CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATCTACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAGGGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTTTCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTTAGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACGAGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGTCTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAGCGTTTAAAGCAAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCGGCCGGCCGTTCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT] [+] EMBL BM654337 [CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATCTACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAGGGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTTTCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTTAGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACGAGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGTCTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAAC ] [+] EMBL BX617448 [ GTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAG ] [+] EMBL BX628898 [ GGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAGCGTTTAAAGCAAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCGGCCGGCCGTTCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT] consensusID : consensus_5655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGACGTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGAGGAGGGAGGGTGTGCCTAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGCAAAAAAGCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGGCCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATGATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC] [+] EMBL BM589767 [CCGACGTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGAGGAGGGAGGGTGTGCCTAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGCAAAAAAGCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGGCCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATGATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5655#0 CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATC 60 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 TACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAG 120 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 GGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTT 180 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 TCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTT 240 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 AGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACG 300 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 AGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGT 360 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 CTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTC 420 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 TTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGA 480 consensus_5655#1 ------------------------------------------------------------ consensus_5655#0 TAACAACAACAAGTCCCCTAGGCA-CACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCA 539 consensus_5655#1 -----CCGAC--GTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGA 53 * ** ******* * **** * * * * * * * * consensus_5655#0 AGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCA 599 consensus_5655#1 GGAGGGAGGGTGTGCC-TAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCA 112 * * **** ** ** *************************************** consensus_5655#0 ATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAA 659 consensus_5655#1 ATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAA 172 ************************************************************ consensus_5655#0 CAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGG 719 consensus_5655#1 CAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGG 232 *************** *********** ************************ ******* consensus_5655#0 AACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTT 779 consensus_5655#1 AACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTT 292 ************************************************************ consensus_5655#0 TTGAACATTCGCAGAATCTACAAACCGATTAGA-GGGAGGAGTCCGTTAGCGTTTAAAGC 838 consensus_5655#1 TTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGC 352 ********************************* *** ********************** consensus_5655#0 AAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATG 898 consensus_5655#1 AAAAAA---GCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATG 409 ****** ****** ****************************************** consensus_5655#0 AGGC-GGCCGGCCGTTC-GGTATGGTGGGGAGGCGTATTTGTTATCTACCC-GCGTGGCT 955 consensus_5655#1 AGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCT 469 **** ************ ********************************* ******** consensus_5655#0 GTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT------------------------ 991 consensus_5655#1 GTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGG 529 ************************************ consensus_5655#0 ------------------------------------------------------------ consensus_5655#1 CCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATG 589 consensus_5655#0 ------------------------------------------------ consensus_5655#1 ATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC 637 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||