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Anopheles gambiae
cluster # 5655 cluster # 5655       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5655#0 length = 991 sequences # 3  
consensus_5655#1 length = 637 sequences # 1  

consensusID : consensus_5655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 991
fasta sequence
                              [CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATCTACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAGGGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTTTCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTTAGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACGAGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGTCTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAGCGTTTAAAGCAAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCGGCCGGCCGTTCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT]

[+] EMBL BM654337             [CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATCTACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAGGGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTTTCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTTAGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACGAGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGTCTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAAC                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX617448             [                                                                                                                                                                                                                                                                                                                                                                                                      GTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAG                                                                                                                                                                   ]
[+] EMBL BX628898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAGCGTTTAAAGCAAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCGGCCGGCCGTTCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT]


>consensus_5655#0 CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATC TACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAG GGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTT TCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTT AGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACG AGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGT CTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTC TTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGA TAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAA GTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAA TAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAAC AAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGA ACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTT TGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAGCGTTTAAAGCAA AAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAG GCGGCCGGCCGTTCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCGCGTGGCTGTCGC AAAGGAAACCCGGAAGAGTCGCCCGGAAGGT



consensusID : consensus_5655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence
                              [CCGACGTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGAGGAGGGAGGGTGTGCCTAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGCAAAAAAGCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGGCCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATGATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC]

[+] EMBL BM589767             [CCGACGTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGAGGAGGGAGGGTGTGCCTAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGCAAAAAAGCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGGCCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATGATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC]


>consensus_5655#1 CCGACGTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGAGGAGGGA GGGTGTGCCTAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGA AGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAG GCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGGAACCTGTG TTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACAT TCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGCAAAAAAGC AAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCCGGCCGG CCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCTGTCGCAAAGGA AACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGGCCCACCCGTAA AGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATGATAGACGATGC TGTATAATAGTTGAGCTACGTACATACTACACACAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5655#0      CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATC 60
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      TACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAG 120
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      GGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTT 180
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      TCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTT 240
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      AGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACG 300
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      AGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGT 360
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      CTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTC 420
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      TTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGA 480
consensus_5655#1      ------------------------------------------------------------
                                                                                  

consensus_5655#0      TAACAACAACAAGTCCCCTAGGCA-CACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCA 539
consensus_5655#1      -----CCGAC--GTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGA 53
                            * **  *******    *   ****  * * *  *   *       *   *  *

consensus_5655#0      AGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCA 599
consensus_5655#1      GGAGGGAGGGTGTGCC-TAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCA 112
                       * *  ****  **    ** ***************************************

consensus_5655#0      ATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAA 659
consensus_5655#1      ATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAA 172
                      ************************************************************

consensus_5655#0      CAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGG 719
consensus_5655#1      CAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGG 232
                      *************** *********** ************************ *******

consensus_5655#0      AACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTT 779
consensus_5655#1      AACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTT 292
                      ************************************************************

consensus_5655#0      TTGAACATTCGCAGAATCTACAAACCGATTAGA-GGGAGGAGTCCGTTAGCGTTTAAAGC 838
consensus_5655#1      TTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGC 352
                      ********************************* *** **********************

consensus_5655#0      AAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATG 898
consensus_5655#1      AAAAAA---GCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATG 409
                      ******   ******   ******************************************

consensus_5655#0      AGGC-GGCCGGCCGTTC-GGTATGGTGGGGAGGCGTATTTGTTATCTACCC-GCGTGGCT 955
consensus_5655#1      AGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCT 469
                      **** ************ ********************************* ********

consensus_5655#0      GTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT------------------------ 991
consensus_5655#1      GTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGG 529
                      ************************************                        

consensus_5655#0      ------------------------------------------------------------
consensus_5655#1      CCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATG 589
                                                                                  

consensus_5655#0      ------------------------------------------------
consensus_5655#1      ATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC 637
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)