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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1352 fasta sequence
[GACCCATGGCGGGAATGTTACGCGAAGCACTCCTTCGCTTCAAGAGAGATTAACACTGTTCCGTTTACGTGAGCGATGAACATTGTGTATAAGCGTGCAATAATTGAAACGGCTCTGTAATGCTGCTCTCTGTTCGACAACGCCTGAGCAAAACGATAGCCAAATTACAACATTTACAAACTATGCGCTCAAATTAGAGTACCGGTTCCGTCAGTCCGTCATGTTTCAACACATATTTTTGGACGTTTTTATGGCAGCTATTTTTATTTTGCAATATCATATATTAAACCAATGTCAAGTAATCATATGTTGTGTACACCCTTTTGAACATTCGCTGCAATTTCTTGTTGTCTTGGAATGTGTTGTACCATCCCTAAAGCCATCCAAACTACTAAACAACATCGTCTTTCAATTACAACTTGGCTTGCTGCCCATCTTGATGCGTTTAACAATGCATGTACAATCGAAACATGTGCGTGCACATAACACATTAGAAACACTGGCCCGCGTACACGGCGGCGGATATGATAAACAGTGTACTGCGTAAATGGCCGGGTGTCTATAAACGCACGTTTAGGATGAAAATTTGAATTTACTATGCAAAAGTCATGTCATTTTGGTTTCCATCGAAGGTTTAGTTTGAAGACGTAAATTGAGAGACAGAGAACAATAGTTTTCAGCAGCGGATGGCCTAACAGTGTTGAAGAGAATAGTTGGGTTCTTAAACAAGTTATATAAAGCTTCCGTTACGGCCTTTTGCAATGTGAGACGTGCGTGGTTGCAAAAAAAAGAAGGGGAATTGGCGGCAGCTAATCAACGAACTCGAAACATTTTGAGGAAGGTGTAGTAACTAAACGAACAGATTAGGTAGTCTAACCAATTGATAGTATGATCTATCTTTACTATTCCGAAAGACTAATCTGATGAAAGTTTTTTTTTTGTTCATTATTATTTTGGTATAGATTTAGGACGTGTACCTACCTACTGACGGGGTTTGGATCAGATCTTGCTCAGTTGGTATATTTTCACCATGATTTATGTTTTATAGTTATTTTTCAAATCAGTAAACCCTCCAATAGCGTATAACCGTAACGTTAGTGATTGCATATGACGAAGTGCATAAACATACGCCAGTATGTGCGCGCGTATGTAGGATTATCGTGTATCGAACCTCGATCTTATTGTATATGCACATCCAGATATGATAATATTTGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGNGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCG]
[-] EMBL BM652547 [GACCCATGGCGGGAATGTTACGCGAAGCACTCCTTCGCTTCAAGAGAGATTAACACTGTTCCGTTTACGTGAGCGATGAACATTGTGTATAAGCGTGCAATAATTGAAACGGCTCTGTAATGCTGCTCTCTGTTCGACAACGCCTGAGCAAAACGATAGCCAAATTACAACATTTACAAACTATGCGCTCAAATTAGAGTACCGGTTCCGTCAGTCCGTCATGTTTCAACACATATTTTTGGACGTTTTTATGGCAGCTATTTTTATTTTGCAATATCATATATTAAACCAATGTCAAGTAATCATATGTTGTGTACACCCTTTTGAACATTCGCTGCAATTTCTTGTTGTCTTGGAATGTGTTGTACCATCCCTAAAGCCATCCAAACTACTAAACAACATCGTCTTTCAATTACAACTTGGCTTGCTGCCCATCTTGATGCGTTTAACAATGCATGTACAATCGAAACATGTGCGTGCACATAACACATTAGAAACACTGGCCCGCGTACACGGCGGCGGATATGATAAACAGTGTACTGCGTAAATGGCCGGGTGTCTATAAACGCACGTTTAGGATGAAAATTTGAATTTACTATGCAAAAGTCATGTCATTTTGGTTTCCATCGAAGGTTTAGTTTGAAGACGTAAATTGAGAGACAGAGAACAATAGTTTTCAGCAGCGG ]
[+] EMBL BX624573 [ GTTTAGGATGAAAATTTGAATTTACTATGCAAAAGTCATGTCATTTTGGTTTCCATCGAAGGTTTAGTTTGAAGACGTAAATTGAGAGACAGAGAACAATAGTTTTCAGCAGATGATGGCCTAACAGTGTTGAAGAGAATAGTTGGGTTCTTAAACAAGTTATATAAAGCTTCCGTTACGGCCTTTTGCAATGTGAGACGTGCGTGGTTGCAAAAAAAAGAAGGGGAATTGGCGGCAGCTAATCAACGAACTCGAAACATTTTGAGGAAGGTGTAGTAACTAAACGAACAGATTAGGTAGTCTAACCAATTGATAGTATGATCTATCTTTACTATTCCGAAAGACTAATCTGATGAAAGTTTTTTTTTTGTTCATTATTATTTTGGTATAGATTTAGGACGTGTACCTACCTACTGACGGGGTTTGGATCAGATCTTGCTCAGTTGGTATATTTTCACCATGATTTATGTTTTATAGTTATTTTTCAAATCAGTAAACCCTCCAATAGCGTATAACCGTAACGTTAGTGATTGCATATGACGAAGTGCATAAACATACGCCAGTATGTGCGCGCGTATGTAGGATTATCGTGTATCGAACCTCGATCTTATTGTATATGCACATCCAGATATGATAATATTTGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGNGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCG]
consensusID : consensus_5658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CAAGAATCGGCACGAGGAGCAAGTAGATAAATGTGCCGCTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGATCATGTATGTGTATGTATTTTTTTGGATTATAACGATTATGTATCCTCCATTGTCCTGATTGACGTTTGCCAGTTAGATCCTGCTTTCTTGCTATTTAACATGCAGCATAGAGTACAGTACACATGTTTGTTTTGGTAGGGATTAATACATAGCGAATAGCGAGGTAAAGGACATGTTCGCTACTCGTATATTCGCTGCTTGTTGATCGGTTTGCTGACATCGATCTTAACAGTTCGTTGATCGTCATTGTTGAACCCACGCATACGATCATTGAGATGGAGAATGCCCGCTATGTAGCTTGAATCAACTGGAGCTGGTTTTGCTTATTTGTGAAACGAATCTTTGTTGTCATCTGTTCTGTTTTATGCAAATTCAATCATGAGGAAAAGGTTTATGCAAATATAAGACTACGACGAGTTGAGTTCCGTCACAACACTATCGCATCGGCACATACTACCGGTGCATCATTTGAACCCAGGATTGCTGAACCTGTGGAAACAGAACTGGGAAAATACTTTGTGTAGAAAAGGGGAAAATTATTNTAANNTAAANATGGGTAAAGAAAGAGCATTACAAAACGTTTTGTTAGTAAAAAAACAAAC]
[+] EMBL BX468121 [CAAGAATCGGCACGAGGAGCAAGTAGATAAATGTGCCGCTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGATCATGTATGTGTATGTATTTTTTTGGATTATAACGATTATGTATCCTCCATTGTCCTGATTGACGTTTGCCAGTTAGATCCTGCTTTCTTGCTATTTAACATGCAGCATAGAGTACAGTACACATGTTTGTTTTGGTAGGGATTAATACATAGCGAATAGCGAGGTAAAGGACATGTTCGCTACTCGTATATTCGCTGCTTGTTGATCGGTTTGCTGACATCGATCTTAACAGTTCGTTGATCGTCATTGTTGAACCCACGCATACGATCATTGAGATGGAGAATGCCCGCTATGTAGCTTGAATCAACTGGAGCTGGTTTTGCTTATTTGTGAAACGAATCTTTGTTGTCATCTGTTCTGTTTTATGCAAATTCAATCATGAGGAAAAGGTTTATGCAAATATAAGACTACGACGAGTTGAGTTCCGTCACAACACTATCGCATCGGCACATACTACCGGTGCATCATTTGAACCCAGGATTGCTGAACCTGTGGAAACAGAACTGGGAAAATACTTTGTGTAGAAAAGGGGAAAATTATTNTAANNTAAANATGGGTAAAGAAAGAGCATTACAAAACGTTTTGTTAGTAAAAAAACAAAC]
consensusID : consensus_5658#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGTGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCGATTCGCGTACGGCGGCAGTGTTATGTTGTTCGCTTATGCTTAAATGTAACGATGCAAAATAGCAGCTCAAACATGAAGACTAAATACCACAGTAAGAGAGAGAAAGAGAGAAAGTGAGAGTGAGAGACAGCAAGTGAGAAAAAGAGAACAGGAGAGGAAAAGAAGAAAACAGTTCGATCCGCGCGAACGCATGTTAACAACCTGTTTTTCTCTAAATTGAACTACCGTGTGCTACACCAGAACTTCCAATTGCGTAGAAAAGGTATGTGTTTACTGTAAATTCTGTTTTACCACCACCACTCTTATACAGATCAGAATGCGATTATGCTATTTAGCAAAAAGGGTGTTCAATCCTGGTCCAATTATTGCAAAGTAGATAAATGTGCCGTTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGCTCATGTATGTGTATGTA]
[+] EMBL BM590515 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCATTGTATTCTCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTTAATGTGTAATGCGGTGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCCCTTCGCGATTCGCGTACGGCGGCAGTGTTATGTTGTTCGCTTATGCTTAAATGTAACGATGCAAAATAGCAGCTCAAACATGAAGACTAAATACCACAGTAAGAGAGAGAAAGAGAGAAAGTGAGAGTGAGAGACAGCAAGTGAGAAAAAGAGAACAGGAGAGGAAAAGAAGAAAACAGTTCGATCCGCGCGAACGCATGTTAACAACCTGTTTTTCTCTAAATTGAACTACCGTGTGCTACACCAGAACTTCCAATTGCGTAGAAAAGGTATGTGTTTACTGTAAATTCTGTTTTACCACCACCACTCTTATACAGATCAGAATGCGATTATGCTATTTAGCAAAAAGGGTGTTCAATCCTGGTCCAATTATTGCAAAGTAGATAAATGTGCCGTTTCGACAGGGCAATAGATAAAATGCTAGCAAAACAAAACAATCGCTCATGTATGTGTATGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5658#0 GACCCATGGCGGGAATGTTACGCGAAGCACTCCTTCGCTTCAAGAGAGATTAACACTGTT 60
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 CCGTTTACGTGAGCGATGAACATTGTGTATAAGCGTGCAATAATTGAAACGGCTCTGTAA 120
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 TGCTGCTCTCTGTTCGACAACGCCTGAGCAAAACGATAGCCAAATTACAACATTTACAAA 180
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 CTATGCGCTCAAATTAGAGTACCGGTTCCGTCAGTCCGTCATGTTTCAACACATATTTTT 240
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 GGACGTTTTTATGGCAGCTATTTTTATTTTGCAATATCATATATTAAACCAATGTCAAGT 300
consensus_5658#2 -----CCGCCCACGCGTCCGCCCACGCGTCCGGTCATTGTATTCTC------CTTTATGT 49
consensus_5658#1 ----------CAAGAATCGGCACGAGGAGCAAGTAGATAAATGTGCCGC---TTCGACAG 47
* * ** *
consensus_5658#0 AATCATATGTTGTGTACACCCTTTTGAACATTCGCTGCAATTTCTTGTTGTCTTGGAATG 360
consensus_5658#2 TACCTTTTATTTTG----CTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTTT-AATG 104
consensus_5658#1 GGCAATAGATAAAATGCTAGCAAAACAAAACAATCGATCATGTATGTGTATGTATTTTTT 107
* * * * * * * * * * *
consensus_5658#0 TGTTGTACCATCCCTAAAGCCATCCAAACTACTAAACAACATCGTCTTTCAATTACAACT 420
consensus_5658#2 TGTAATGCGGT-----GGGGCAGCCAA-----CAAATCAAATCGTGTCTCAGT--CCATC 152
consensus_5658#1 TGGATTATAACGATTATGTATCCTCCATTGTCCTGATTGA--CGTTTGCCAGTTAGATCC 165
** * * * * *** * ** *
consensus_5658#0 TGGCTTGCTGCCCATCTTGATGCGTTTAACAATGCATGTACAATCGAAACATGTGCGTGC 480
consensus_5658#2 CGTTTCCCTTCGCGATT---CGCGTACGGCGGCAGTGTTATGTTGTTCGCTTATGCTTAA 209
consensus_5658#1 TGCTTTCTTGCTATTTAACATGCAGCATAGAGTACAGTACACATGTTTGTTTTGGTAGGG 225
* * * * ** * * *
consensus_5658#0 ACATAACACATTAGAAACACT-GGCCCGCGTACACGGCGGCGGATATGATAAACAGTGTA 539
consensus_5658#2 ATGTAACG-ATGCAAAATAGC-AGCTCAAACATGAAG-ACTAAATACCACAGTAAGAGA- 265
consensus_5658#1 AT-TAATACATAGCGAATAGCGAGGTAAAGGACATGTTCGCTACTCGTATATTCGCTGCT 284
* *** ** ** * * * * * * *
consensus_5658#0 CTGCGTAAATGG----CCGGGTGTCTATAAACGCACGTTTAGGATGA-----AAATTTGA 590
consensus_5658#2 --GAGAAAGAGA----GAAAGTGAGAGTGAGAG-ACAGCAAGTGAGA-----AAAAGAGA 313
consensus_5658#1 TGTTGATCGGTTTGCTGACATCGATCTTAACAGTTCGTTGATCGTCATTGTTGAACCCAC 344
* * * * * * * * **
consensus_5658#0 ATTTACTATGCA-AAAGTCATGTCATTTTGGTTTCCATC--GAAGGTTTAGTTTGAAGAC 647
consensus_5658#2 ACAGGAGAGGAA-AAGAAGAAAACAGTTCGATCCGCG-C--GAACGCATG--TTAACAAC 367
consensus_5658#1 GCATACGATCATTGAGATGGAGAATGCCCGCTATGTAGCTTGAATCAACTGGAGCTGGTT 404
* * * * * ***
consensus_5658#0 GTAAATTGAGAGACAGAGAACAATAGT--------TTTCAGCAGCG-GATGGCCTAACAG 698
consensus_5658#2 CTGTTTTTCTCTAAATTGAACTACCGT--------GTGCTACACCA-GAACTTCCAATTG 418
consensus_5658#1 TTGCTTATTTGTGAAACGAATCTTTGTTGTCATCTGTTCTGTTTTATGCAAATTCAATCA 464
* * * *** ** * * * **
consensus_5658#0 TGTTGAAGAGAA-TAGTTGGGTT-----CTTAAACAAGTTATATAAAGCTTCCGTTACGG 752
consensus_5658#2 CGTAGAAAAGG--TATGTGTTTA-----CT---GTAAATTCTGTTTTACCACCACCAC-- 466
consensus_5658#1 TGAGGAAAAGGTTTATGCAAATATAAGACTACGACGAGTTGAGTTCCGTCAC-AACACTA 523
* *** ** ** * ** * ** * * **
consensus_5658#0 CCTTTTGCAATGTGAGACGTGCGTG-GTTGCAAAAAAAAGAAGGGGAATTGGCGGCAGCT 811
consensus_5658#2 TCTTATACAGATCAGAATGCGATTATGCTATTTAGCAAAAAGGGTGTTCAATCCTGGTCC 526
consensus_5658#1 TCGCAT-CGGCACATACTACCGGTGCATCATTTGAACCCAGGATTGCTGAACCT--GTGG 580
* * * * * *
consensus_5658#0 AATCA--ACGAACTCGAAACATTTTGAGGAAGGTGTAGTAACTAAACGA-ACAGATTAGG 868
consensus_5658#2 AATTATTGCAAAGTAGATAAATGTGCCGTTTCGACAGGGCAATAGATAA-A-ATGCTAGC 584
consensus_5658#1 AAACA----GAACTGGGAAAATACTTTGTGTAGAAAAGGGGAAAATTATTNTAANNTAAA 636
** * ** * * * ** * * * * * **
consensus_5658#0 TA--GTCTAACCAATTGA-TAGTATGATCTATCTTTACTATTCCGAAAGACTAATCTGAT 925
consensus_5658#2 AA--AACAAAACAATCGC-TCATGT-ATGTGTATGTA----------------------- 617
consensus_5658#1 NATGGGTAAAGAAAGAGCATTACAAAACGTTTTGTTAGTAAAAAAACAAAC--------- 687
* ** ** * * * * * **
consensus_5658#0 GAAAGTTTTTTTTTTGTTCATTATTATTTTGGTATAGATTTAGGACGTGTACCTACCTAC 985
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 TGACGGGGTTTGGATCAGATCTTGCTCAGTTGGTATATTTTCACCATGATTTATGTTTTA 1045
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 TAGTTATTTTTCAAATCAGTAAACCCTCCAATAGCGTATAACCGTAACGTTAGTGATTGC 1105
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 ATATGACGAAGTGCATAAACATACGCCAGTATGTGCGCGCGTATGTAGGATTATCGTGTA 1165
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 TCGAACCTCGATCTTATTGTATATGCACATCCAGATATGATAATATTTGTCATTGTATTC 1225
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 TCCTTTATGTTACCTTTTATTTTGCTTTTCAACAAATCTTCAACAAATTTCTCGTGTGTT 1285
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 TAATGTGTAATGCGGNGGGGCAGCCAACAAATCAAATCGTGTCTCAGTCCATCCGTTTCC 1345
consensus_5658#2 ------------------------------------------------------------
consensus_5658#1 ------------------------------------------------------------
consensus_5658#0 CTTCGCG 1352
consensus_5658#2 -------
consensus_5658#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||