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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1181 fasta sequence
[CCGTGTTTTTGTGGCTGGGATTGTCACTGTCGCCCGAGTTCACGCAGTCGGTGTTTGGGGCCCAGTGCACCCAGCAGGTCGATACCGATCGTACGGGATTGCCAGTATTTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCGCAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCAGCGGCCACGATGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTACAACG-CGCTGCGAAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGGATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGAGGATGAGAAGCGGGTAAACAATGTGGCGCATTACTCGACGCGCACTCAGCAACAAATGCATTGCTTGCGCGAAGCGGTTGGTGGCGTTAGCGTGTCGCAGAGTCGCACCCGCGCAAACCGTTACCGACGCGCGTTCGGTGCCAGATGGTAAACAAACCACTCCGCAACCGAACTTGGTACTACACAGTGGTCGGGTTTTCTTTGTAAGTGTGCTATTCCCATCTTTCCTTTCCCGATTGCTCAGCAAACGCAAACAGTTTACGACCATGATACACATTAGTTATTCGTTCTTTCCTTTCTTTTTCGTTTTTCGTTTTGTTATACGTGTTGGTGTTTTAGAACAATTTAAACTCTTTGGCTCGGTAGGAT]
[+] EMBL BM602323 [CCGTGTTTTTGTGGCTGGGATTGTCACTGTCGCCCGAGTTCACGCAGTCGGTGTTTGGGGCCCAGTGCACCCAGCAGGTCGATACCGATCGTACGGGATTGCCAGTATTTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCGCAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCAGCGGCCACGATGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTAC ACG CGCTGCGAAAGGGTACGTCGGGAG ]
[+] EMBL BM590997 [ ccgACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCGCAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCAGCGGCCACG TGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTACAACGCCGCTGCGAAGGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGGATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATT ]
[+] EMBL BX616540 [ AACAATCGTTCCAAATTCATGAGTACAACG CGCTGCG AAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGA GGATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGAGGATGAGAAGCGGGTAAACAATGTGGCGCATTACTCGACGCGCACTCAGCAACAAATGCATTGCTTGCGCGAAGCGGTTGGTGGCGTTAGCGTGTCGCAGAGTCGCACCCGCGCAAACCGTTACCGACGCGCGTTCGGTGCCAGATGGTAAACAAACCACTCCGCAACCGAACTTGGTACTACACAGTGGTCGGGTTTTCTTTGTAAGTGTGCTATTCCCATCTTTCCTTTCCCGATTGCTCAGCAAACGCAAACAGTTTACGACCATGATACACATTAGTTATTCGTTCTTTCCTTTCTTTTTCGTTTTTCGTTTTGTTATACGTGTTGGTGTTTTAGAACAATTTAAACTCTTTGGCTCGGTAGGAT]
consensusID : consensus_5661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[TTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGCGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAATCGTTCCAAATTCATGAGTACAACGCGCTGCGAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGATGACGAAGGCGGCGGCGTGGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGATGAGAAGCGGGTAAACAAACCACTCCGCAACCGAACTT]
[+] EMBL BX627287 [TTGATAATCCTCTGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGCGGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCGAGGATCGCGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACAAAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTACTAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCGGCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAAGGAACAACAATCGTTCCAAATTCATGAGTACAACGCGCTGCGAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGGATGACGAAGGCGGCGGCGTGGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTGGAGGAAGATGAAGAGCAAGAGGAGGAGGAGGATGAGAAGCGGGTAAACAAACCACTCCGCAACCGAACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5661#0 CCGTGTTTTTGTGGCTGGGATTGTCACTGTCGCCCGAGTTCACGCAGTCGGTGTTTGGGG 60
consensus_5661#1 ------------------------------------------------------------
consensus_5661#0 CCCAGTGCACCCAGCAGGTCGATACCGATCGTACGGGATTGCCAGTATTTGATAATCCTC 120
consensus_5661#1 ------------------------------------------------TTGATAATCCTC 12
************
consensus_5661#0 TGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGC 180
consensus_5661#1 TGTCGAAGCGCATTCGCGGCATCGTCGACAAAATACAGGAGCAGAAGCGTCGCTGCATGC 72
************************************************************
consensus_5661#0 GGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCG 240
consensus_5661#1 GGCTAACGCTCGTGAAGCAACGCGACAAGCTGGAGAGCGTGCTGCGCCACTTCCTGGTCG 132
************************************************************
consensus_5661#0 AGGATCGTGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACA 300
consensus_5661#1 AGGATCGCGGCACGACCGACGGTTCCGTCAGCTACGTTGACTTCCTCTGTCACGTGCACA 192
******* ****************************************************
consensus_5661#0 AAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTAC 360
consensus_5661#1 AAGAGATCCGACAGATGCTGAGCTAGCTGGCCAACACCGGCAGCCACGGCAACGCACTAC 252
************************************************************
consensus_5661#0 TAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCG 420
consensus_5661#1 TAGCGAGCAGTTTTTTCTCGGGCGGAAGGTTTAGATTTAATAACAGCAATACCGGTAGCG 312
************************************************************
consensus_5661#0 GCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAA 480
consensus_5661#1 GCAACACGGTTACCGTCCCTGCTGCTGCACCTACTACTAACACTACTTACAATACTACAA 372
************************************************************
consensus_5661#0 GGAACAACAACACTGCTGCCGCCGTTGCGCCGGCCAATTACATCCCCTCCTGGCAGTGCG 540
consensus_5661#1 GGAACAACAA-------------------------------------------------- 382
**********
consensus_5661#0 CAGGACGCGAACGGAAATGTGCGCACGCTGTATCAAAGGGAGCTCAGCCATACGATGGCA 600
consensus_5661#1 ------------------------------------------------------------
consensus_5661#0 GCGGCCACGATGTTGTGCAGTGCCACCGAACAACAATCGTTCCAAATTCATGAGTACAAC 660
consensus_5661#1 ------------------------------------TCGTTCCAAATTCATGAGTACAAC 406
************************
consensus_5661#0 GCGCTGCGAAAGGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGG 720
consensus_5661#1 GCGCTGCGAA-GGGTACGTCGGGAGCCGCATCGCGTCCCGGTACGACGAGGACGAGGAGG 465
********** *************************************************
consensus_5661#0 GATGACGAAGGCGGCGGCGGTGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTG 780
consensus_5661#1 -ATGACGAAGGCGGCGGCGTGGATGATGACGTGGCAGCCCTCCCCGATGGTACCATTCTG 524
****************** ***************************************
consensus_5661#0 GAGGAAGATGAAGAGCAAGAGGAGGAGGAGGAGGATGAGAAGCGGGTAAACAATGTGGCG 840
consensus_5661#1 GAGGAAGATGAAGAGCAAGAGGAGGAGGAGGA---TGAGAAGCGGGTAAACAAACCACTC 581
******************************** ******************
consensus_5661#0 CATTACTCGACGCGCACTCAGCAACAAATGCATTGCTTGCGCGAAGCGGTTGGTGGCGTT 900
consensus_5661#1 CGCAACCGAACTT----------------------------------------------- 594
* ** **
consensus_5661#0 AGCGTGTCGCAGAGTCGCACCCGCGCAAACCGTTACCGACGCGCGTTCGGTGCCAGATGG 960
consensus_5661#1 ------------------------------------------------------------
consensus_5661#0 TAAACAAACCACTCCGCAACCGAACTTGGTACTACACAGTGGTCGGGTTTTCTTTGTAAG 1020
consensus_5661#1 ------------------------------------------------------------
consensus_5661#0 TGTGCTATTCCCATCTTTCCTTTCCCGATTGCTCAGCAAACGCAAACAGTTTACGACCAT 1080
consensus_5661#1 ------------------------------------------------------------
consensus_5661#0 GATACACATTAGTTATTCGTTCTTTCCTTTCTTTTTCGTTTTTCGTTTTGTTATACGTGT 1140
consensus_5661#1 ------------------------------------------------------------
consensus_5661#0 TGGTGTTTTAGAACAATTTAAACTCTTTGGCTCGGTAGGAT 1181
consensus_5661#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||