cluster # 567

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Anopheles gambiae
cluster # 567 cluster # 567 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_567#0 length = 671 sequences # 1

consensus_567#1 length = 520 sequences # 1

consensusID : consensus_567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CAGGTGCACAACAAACCAGCCTCCCGTACCCGAGTCCAGGTTGATTTCCCGGGTTGACTGATTTTACGCATGTTCTCGCAACTGTCGTCACCGTCATCGACGTACGTGCGGGTCCATTTCGGACGGACTTTGGATTTGGAGATAAACACACCGAATCAGCTGCCCAAAGCCCGTGGAGTGGTGTGATTAGCAGCACACGGCCGCTCGTCAAGTACCGTGCACCCCGCAGACCCCGAGAAGCCTCGATGGCACAATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCGTCGGGCTGTGCAACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCGATCAGCGGTGTCAATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCGTGCTGGCCAACCTTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGCCAAAATGTTCCACTTTGCGCTGGATGATTTGCGCGAGCGTAAGATCGCGCACGATCATTGCGTGTACCATCGCGGTGCGCAGGTACCGCTGTCCACGGTTTGGCTGAGTTTGGCCACCGGTAGCCGGACGATCGTGCATAGCAATCCGGACCTACCGGAGCTTACCTTTTGAGGATTTTCAGCGCATCAATCTACAGGA]

[+] EMBL BX614285             [CAGGTGCACAACAAACCAGCCTCCCGTACCCGAGTCCAGGTTGATTTCCCGGGTTGACTGATTTTACGCATGTTCTCGCAACTGTCGTCACCGTCATCGACGTACGTGCGGGTCCATTTCGGACGGACTTTGGATTTGGAGATAAACACACCGAATCAGCTGCCCAAAGCCCGTGGAGTGGTGTGATTAGCAGCACACGGCCGCTCGTCAAGTACCGTGCACCCCGCAGACCCCGAGAAGCCTCGATGGCACAATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCGTCGGGCTGTGCAACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCGATCAGCGGTGTCAATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCGTGCTGGCCAACCTTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGCCAAAATGTTCCACTTTGCGCTGGATGATTTGCGCGAGCGTAAGATCGCGCACGATCATTGCGTGTACCATCGCGGTGCGCAGGTACCGCTGTCCACGGTTTGGCTGAGTTTGGCCACCGGTAGCCGGACGATCGTGCATAGCAATCCGGACCTACCGGAGCTTACCTTTTGAGGATTTTCAGCGCATCAATCTACAGGA]




>consensus_567#0
CAGGTGCACAACAAACCAGCCTCCCGTACCCGAGTCCAGGTTGATTTCCCGGGTTGACTG
ATTTTACGCATGTTCTCGCAACTGTCGTCACCGTCATCGACGTACGTGCGGGTCCATTTC
GGACGGACTTTGGATTTGGAGATAAACACACCGAATCAGCTGCCCAAAGCCCGTGGAGTG
GTGTGATTAGCAGCACACGGCCGCTCGTCAAGTACCGTGCACCCCGCAGACCCCGAGAAG
CCTCGATGGCACAATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCG
TCGGGCTGTGCAACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCG
ATCAGCGGTGTCAATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCG
TGCTGGCCAACCTTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGCCAAAATGT
TCCACTTTGCGCTGGATGATTTGCGCGAGCGTAAGATCGCGCACGATCATTGCGTGTACC
ATCGCGGTGCGCAGGTACCGCTGTCCACGGTTTGGCTGAGTTTGGCCACCGGTAGCCGGA
CGATCGTGCATAGCAATCCGGACCTACCGGAGCTTACCTTTTGAGGATTTTCAGCGCATC
AATCTACAGGA

consensusID : consensus_567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [ATCGAGAGAAAGAGAGATAGGATTAATGTTGTTTTTTTTTTGCTATTACGTTTTATAATCGTTTAGTTGTTTATTTTTCCCTTTCAAAAGATACTCCAACAAGTACACGATGTGAGTGTGTTTGTGTGTGTGTGCACACGATGTTATAAAATGCAAAACACCAAAAGATAATACATTCGAACGTATAAAACAATCAGCTTAGCCCCGTTATTCCACATTCTCGTTTGCAACTCTTTACACTGATTCGGTGCTTGTTCGCTTTTGTAACCTCTCTCTCTCTCTCTCCAGCCTCGATGGCACAATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCGTCGGGCTGTGCAACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCGATCAGCGGTGTCAATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCGTGCTGGCCAACCTTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGC]

[+] EMBL BX617252             [ATCGAGAGAAAGAGAGATAGGATTAATGTTGTTTTTTTTTTGCTATTACGTTTTATAATCGTTTAGTTGTTTATTTTTCCCTTTCAAAAGATACTCCAACAAGTACACGATGTGAGTGTGTTTGTGTGTGTGTGCACACGATGTTATAAAATGCAAAACACCAAAAGATAATACATTCGAACGTATAAAACAATCAGCTTAGCCCCGTTATTCCACATTCTCGTTTGCAACTCTTTACACTGATTCGGTGCTTGTTCGCTTTTGTAACCTCTCTCTCTCTCTCTCCAGCCTCGATGGCACAATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCGTCGGGCTGTGCAACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCGATCAGCGGTGTCAATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCGTGCTGGCCAACCTTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGC]




>consensus_567#1
ATCGAGAGAAAGAGAGATAGGATTAATGTTGTTTTTTTTTTGCTATTACGTTTTATAATC
GTTTAGTTGTTTATTTTTCCCTTTCAAAAGATACTCCAACAAGTACACGATGTGAGTGTG
TTTGTGTGTGTGTGCACACGATGTTATAAAATGCAAAACACCAAAAGATAATACATTCGA
ACGTATAAAACAATCAGCTTAGCCCCGTTATTCCACATTCTCGTTTGCAACTCTTTACAC
TGATTCGGTGCTTGTTCGCTTTTGTAACCTCTCTCTCTCTCTCTCCAGCCTCGATGGCAC
AATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCGTCGGGCTGTGCA
ACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCGATCAGCGGTGTC
AATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCGTGCTGGCCAACC
TTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_567#0      -----------------------------------------------CAGGTGCACAACA 13
consensus_567#1      ATCGAGAGAAAGAGAGATAGGATTAATGTTGTTTTTTTTTTGCTATTACGTTTTATAATC 60
                                                                      * *  * **  

consensus_567#0      AACCAGCCTCCCGTACCCGAGTCCAGGTTGATTTCCCGGGTTGACTGATTTTACGCATGT 73
consensus_567#1      GTTTAGTTGTTTATTTTTCCCTTTCAAAAGATACTCCAA-CAAGTACACGATGTGAGTGT 119
                         **       *       *       ***   **          *   *  *  ***

consensus_567#0      TCTCGCAACTGTCGTCAC-CGTCATCGACGTACGTGCGGGTCCATTTCGGACGGACTTTG 132
consensus_567#1      GTTTGTGTGTGTGTGCACACGATGTTATAAAATGCAAAACACCAAAAGATAATACATTCG 179
                       * *    ***   *** **   *      * *       ***      *     ** *

consensus_567#0      GATTTG-GAGATAAACACACCGAATCAGCTGCCCAAAGCCCGTGGAGTGGTGTGATTAGC 191
consensus_567#1      AACGTATAAAACAATCAGCTTAGCCCCGTTATTCCACATTC-TCGTTTGCAACTCTTTAC 238
                      *  *   * * ** **        * * *   * *    * * *  **      **  *

consensus_567#0      AGCACACGGCCGCTCGTCAAGTACCGTG-CACCCCGCAGACCCCGAGAAGCCTCGATGGC 250
consensus_567#1      ACTGATTCGGTGCTTGTTCGCTTTTGTAACCTCTCTCTCTCTCTCTCCAGCCTCGATGGC 298
                     *       *  *** **    *   **  *  * * *   * *     ************

consensus_567#0      ACAATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCGTCGGGCTGTG 310
consensus_567#1      ACAATTCGAGCAAGATGGCAAACGGCTACACGGAAAGAAAATACTGTGCGTCGGGCTGTG 358
                     ************************************************************

consensus_567#0      CAACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCGATCAGCGGTG 370
consensus_567#1      CAACATCGACATCATACAGGTGTGTGATGCGTACCCGGCGGAAGATTCCGATCAGCGGTG 418
                     ************************************************************

consensus_567#0      TCAATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCGTGCTGGCCAA 430
consensus_567#1      TCAATCGAGCCGATGGCAGCGTGGTGGCAACGCATCCAACAACTGTACCGTGCTGGCCAA 478
                     ************************************************************

consensus_567#0      CCTTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGCCAAAATGTTCCACTTTGC 490
consensus_567#1      CCTTGGTGCACGCTGTGAGCTGCTCGCCTCCTTCAGCGATGC------------------ 520
                     ******************************************                  

consensus_567#0      GCTGGATGATTTGCGCGAGCGTAAGATCGCGCACGATCATTGCGTGTACCATCGCGGTGC 550
consensus_567#1      ------------------------------------------------------------
                                                                                 

consensus_567#0      GCAGGTACCGCTGTCCACGGTTTGGCTGAGTTTGGCCACCGGTAGCCGGACGATCGTGCA 610
consensus_567#1      ------------------------------------------------------------
                                                                                 

consensus_567#0      TAGCAATCCGGACCTACCGGAGCTTACCTTTTGAGGATTTTCAGCGCATCAATCTACAGG 670
consensus_567#1      ------------------------------------------------------------
                                                                                 

consensus_567#0      A 671
consensus_567#1      -