cluster # 5671

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Anopheles gambiae
cluster # 5671 cluster # 5671 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5671#0 length = 730 sequences # 2

consensus_5671#1 length = 456 sequences # 1
consensus_5671#2 length = 99 sequences # 1

consensusID : consensus_5671#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 730
fasta sequence

                              [GTGTTACACCATGTGCTATATATATATGTATATGTATATTCAATACCGTTCACTTAGTACGTTCCGGGTTTAGTGCTGTGTGTATGCTATGTATCGGGATTTTCCGTTTATACATACAGACACGCATACATACATACCTACGTACATAAGCCGCATACACGCATGTTACTACTTTACCTTAGCGTTTATGATTATTCTTAATTTTAAAAACAGTTCAGTTAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCCGTCATACTTTTTGTACAGAAAAAAACCCCGCAAAATGAATGTTGTGCCCCCCCCCCCCCCCTCCCTGTAAACTGTAAGGAGAGTGACTAAAAAAGAATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTAGACAAGCAGGAGGGAGAGAGGGACATAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGTATAAGAAGATGTGGGCGAGGAGGACACAGAGTAGTGTCGGAAAACGATGGAGAAGGATTGCAACAGTCAGGAGGCAAGAAAGTTGATGCAACACTACTCACGGTTTTTTTTTTTTGGGCGATGTGGGAGAAAATGGAAAAATTTTGTCG]

[+] EMBL BX608049             [GTGTTACACCATGTGCTATATATATATGTATATGTATATTCAATACCGTTCACTTAGTACGTTCCGGGTTTAGTGCTGTGTGTATGCTATGTATCGGGATTTTCCGTTTATACATACAGACACGCATACATACATACCTACGTACATAAGCCGCATACACGCATGTTACTACTTTACCTTAGCGTTTATGATTATTCTTAATTTTAAAAACAGTTCAGTTAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCCGTCATACTTTTTGTACAGAAAAAAACCCCGCAAAATGAATGTTGTGCCCCCCCCCCCCCCCTCCCTGTAAACTGTAAGGAGAGTGACTAAAAAAGAATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTAGACAAGCAGGAGGGAGAGAGGGACATAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGG                                                                                                                                                      ]
[-] EMBL CNS09ID9             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAAAGTAGGCTTAGACAACACATTAATATAATTACCGCGGTATAAGAAGATGTGGGCGAGGAGGACACAGAGTAGTGTCGGAAAACGATGGAGAAGGATTGCAACAGTCAGGAGGCAAGAAAGTTGATGCAACACTACTCACGGTTTTTTTTTTTTGGGCGATGTGGGAGAAAATGGAAAAATTTTGTCG]




>consensus_5671#0
GTGTTACACCATGTGCTATATATATATGTATATGTATATTCAATACCGTTCACTTAGTAC
GTTCCGGGTTTAGTGCTGTGTGTATGCTATGTATCGGGATTTTCCGTTTATACATACAGA
CACGCATACATACATACCTACGTACATAAGCCGCATACACGCATGTTACTACTTTACCTT
AGCGTTTATGATTATTCTTAATTTTAAAAACAGTTCAGTTAAAAAAAAAGTCAGAAGAGT
CAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCCGTCATACTTTTT
GTACAGAAAAAAACCCCGCAAAATGAATGTTGTGCCCCCCCCCCCCCCCTCCCTGTAAAC
TGTAAGGAGAGTGACTAAAAAAGAATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCC
AAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCG
GTGCGGTGTACGGCGTAGACAAGCAGGAGGGAGAGAGGGACATAGGCGCGGTAAGAGGTA
AAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGTATAAGAAGATGTGGGCGAG
GAGGACACAGAGTAGTGTCGGAAAACGATGGAGAAGGATTGCAACAGTCAGGAGGCAAGA
AAGTTGATGCAACACTACTCACGGTTTTTTTTTTTTGGGCGATGTGGGAGAAAATGGAAA
AATTTTGTCG

consensusID : consensus_5671#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [CCGTACTTTTTGTACAGTAAAACAACCCCCCGCAAATTGAATGTTGTGCCCCCTCCCTGTAAACTGTAAGGGGAGTGACTAAAAAAAAGGATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTTAGACAAGCAGGAGGGAGAGAGGGACAGAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGAATAAGAAGATGGGGGGGAGGGAAGCAAGACACAGAGAGTAGTGTCGGAAAACGATGGAGAACGATTGCAACAGTCAGGCGGCAGGAAAGTTGATGCAACACTACTCACGGTCTTTTTTTTGGGGGGGGATGTGGGAGAATATGGAACAATTTTGTCGTCGAAATTTGA]

[+] EMBL BM592104             [CCGTACTTTTTGTACAGTAAAACAACCCCCCGCAAATTGAATGTTGTGCCCCCTCCCTGTAAACTGTAAGGGGAGTGACTAAAAAAAAGGATAGAAATTGTATCCTTTTTGGTTTTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCGGCGGCGGTGCGGTGTACGGCGTTAGACAAGCAGGAGGGAGAGAGGGACAGAGGCGCGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGAATAAGAAGATGGGGGGGAGGGAAGCAAGACACAGAGAGTAGTGTCGGAAAACGATGGAGAACGATTGCAACAGTCAGGCGGCAGGAAAGTTGATGCAACACTACTCACGGTCTTTTTTTTGGGGGGGGATGTGGGAGAATATGGAACAATTTTGTCGTCGAAATTTGA]




>consensus_5671#1
CCGTACTTTTTGTACAGTAAAACAACCCCCCGCAAATTGAATGTTGTGCCCCCTCCCTGT
AAACTGTAAGGGGAGTGACTAAAAAAAAGGATAGAAATTGTATCCTTTTTGGTTTTGTGT
GTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCG
GCGGCGGTGCGGTGTACGGCGTTAGACAAGCAGGAGGGAGAGAGGGACAGAGGCGCGGTA
AGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGAATAAGAAGATGG
GGGGGAGGGAAGCAAGACACAGAGAGTAGTGTCGGAAAACGATGGAGAACGATTGCAACA
GTCAGGCGGCAGGAAAGTTGATGCAACACTACTCACGGTCTTTTTTTTGGGGGGGGATGT
GGGAGAATATGGAACAATTTTGTCGTCGAAATTTGA

consensusID : consensus_5671#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 99
fasta sequence

                              [CTGAATGCAAAAAACAGTCCAGTAAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCGTCATACT]

[+] EMBL BX608402             [CTGAATGCAAAAAACAGTCCAGTAAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAACGGAAAATGGAGTAACGGGCTCTGCTCGCGCGTCATACT]




>consensus_5671#2
CTGAATGCAAAAAACAGTCCAGTAAAAAAAAAAGTCAGAAGAGTCAGAACTCGGAACGAA
CGGAAAATGGAGTAACGGGCTCTGCTCGCGCGTCATACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5671#0      ------------------------------------------------------------
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      CCGTACTTTTTGTACAGTAAAACAACCCCCCGCAAATTGAATGTTGTGCCCCCTCCCTGT 60
                                                                                  

consensus_5671#0      ------GTGTTACACCATGTGCTATATATATATGTATATGTATATTCAATACCGTTCACT 54
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      AAACTGTAAGGGGAGTGACTAAAAAAAAGGATAGAAATTGTATCCTTTTTGGTTTTGTGT 120
                                                                                  

consensus_5671#0      TAGTACGTTCCGGGTTTAGTGCTGTGTGTATGCTATGTATCGGGATTTTCCGTTTATACA 114
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      GTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAAGAGGCG 180
                                                                                  

consensus_5671#0      TACAGACACGCATACATACATACCTACGTACATAAGCCGCATACACGCATGTTACTACTT 174
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      GCGGCGGTGCGGTGTACGGCGTTAGACAAGCAGGAGGGAGAGAGGGACAGAGGCGCGGTA 240
                                                                                  

consensus_5671#0      TACCTTAGCGTTTATGATTATTCTTAATTTTAAAAACAGTTCAGTTAAAAAAAAAGTCAG 234
consensus_5671#2      ----------------------CTGAATGCAAAAAACAGTCCAGTAAAAAAAAAAGTCAG 38
consensus_5671#1      AGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGAATAAGAAGATGG 300
                                            *   *    ** *  * * * *   ** ** ***   *

consensus_5671#0      AAGAGTCAGAACTCGGAACGAACGGAAAATG-----GAGTAACGGGCTCTGCTCGCG-CC 288
consensus_5671#2      AAGAGTCAGAACTCGGAACGAACGGAAAATG-----GAGTAACGGGCTCTGCTCGCG-C- 91
consensus_5671#1      GGGGGAGGGAAGCAAGACACAGAGAGTAGTGTCGGAAAACGATGGAGAACGATTGCAACA 360
                        * *   ***    **   *  *   * **      *   * **     * * **  * 

consensus_5671#0      GTCATACTTTTTGTACAGAAAAAAACCCCGCAAAATGAATGTTGTGCCCCCCCCCCCCCC 348
consensus_5671#2      GTCATACT---------------------------------------------------- 99
consensus_5671#1      GTCAGGCGGCAGGAAAGTTGATGCAACACTACTCACGGTCTTTTTTTTGGGGGGGGATGT 420
                      ****  *                                                     

consensus_5671#0      CTCCCTGTAAACTGTAAGGAGAGTGACTAAAAAAGAATAGAAATTGTATCCTTTTTGGTT 408
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      GGGAGAATATGGAACAATTTTGTCGTCGAAATTTGA------------------------ 456
                                                                                  

consensus_5671#0      TTGTGTGTTTCCAAGGCAACAAAGGAGCTAAAAGAAAACCCGTTGTGCCAAACCGTTCAA 468
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      ------------------------------------------------------------
                                                                                  

consensus_5671#0      GAGGCGGCGGCGGTGCGGTGTACGGCGTAGACAAGCAGGAGGGAGAGAGGGACATAGGCG 528
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      ------------------------------------------------------------
                                                                                  

consensus_5671#0      CGGTAAGAGGTAAAAAGTAGGCTTAGACAACACATTAATATAATTACGGCGGTATAAGAA 588
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      ------------------------------------------------------------
                                                                                  

consensus_5671#0      GATGTGGGCGAGGAGGACACAGAGTAGTGTCGGAAAACGATGGAGAAGGATTGCAACAGT 648
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      ------------------------------------------------------------
                                                                                  

consensus_5671#0      CAGGAGGCAAGAAAGTTGATGCAACACTACTCACGGTTTTTTTTTTTTGGGCGATGTGGG 708
consensus_5671#2      ------------------------------------------------------------
consensus_5671#1      ------------------------------------------------------------
                                                                                  

consensus_5671#0      AGAAAATGGAAAAATTTTGTCG 730
consensus_5671#2      ----------------------
consensus_5671#1      ----------------------