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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1232 fasta sequence
[TCTCAATGCGGCGCTGATTCAGTAGCTTCAGTTTCATCGATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGTTTTTTTTTCTTTCTTCAATTCCCTCCCCAAACGATGACAGCTCCGAACACCGATCTTCACCTTACCCTGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAGACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGGAAACGGCGGCCAACCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCGGCCCGGTCGATATTCTCGTGAACAATGCCGGCATCTTGCCTACCAGCTTCTCCCAGGATGCGCTACCATCCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAACCTTCATCGACAGCATGATCCGACGGCGGAAGGGACACATCGTAGCGATTAGCTCGATCGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAAGTTTGCGCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGCGAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGATCAGTTTGCTGAAAG-ATGCGTCAGGTCTTACTCGTCTACCAATCTACGAGCCGGCCATGCTCGGTGAGACGGTGGTGAGAGCGATTAAAACAAACCAGCGCAAGGTGGTAGTGCCGGAGGTGTTGAAACCGTACCAGCTGTCCATTTATGAGAATCTACCCATTAAAATTCGCCAGCTATTGACGCGAACAATGGCACAGGGTGAGGTAAAGTTGGTAGATTAGCGTGCTGACACAATCACCATGATCAAATCATTTGAATCGTAATCGGTTCCATGCTCTTTGATTGCAAATTTTGTGTGCAAGATAAAATGTAGCTGCGGCGGGAAATAAATTTACATTA]
[+] EMBL CNS090DP [TCTCAATGCGGCGCTGATTCAGTAGCTTCAGTTTCATCGATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGTTTTTTTTTCTTTCTTCAATTCCCTCCCCAAACGATGACAGCTCCGAACACCGATCTTCACCTTACCCTGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAGACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGGAAACGGCGGCCAACCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCGGCCCGGTCGATATTCTCGTGAACAATGCCGGCATCTTGCCTACCAGCTTCTCCCAGGATGCGCTACCATCCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAACCTTCATCGACAGCATGATCCGACGGCGGAAGGGACACATCGTAGCGATTAGCTCGATCGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAAGTTTGCGCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGCGAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGATCAGTTTGCTGAAAG ATGCG ]
[-] EMBL CNS090DQ [ AAACGGCGGCCAACCTTCGCCGCGACAACGTGTCCGCCGAGGCGTACAAGGTTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCGGCCCGGTCGATATTCTCGTGAACAATGCCGGCATCTTGCCTACCAGCTTCTCCCAGGATGCGCTACCATCCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAACCTTCATCGACAGCATGATCCGACGGCGGAAGGGACACATCGTAGCGATTAGCTCGATCGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAAGTTT GCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGCGAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGATCAGTTTGCTGAAAGCAT CGTCAGGTCTTACTCGTCTACCAATCTACGAGCCGGCCATGCTCGGTGAGACGGTGGTGAGAGCGATTAAAACAAACCAGCGCAAGGTGGTAGTGCCGGAGGTGTTGAAACCGTACCAGCTGTCCATTTATGAGAATCTACCCATTAAAATTCGCCAGCTATTGACGCGAACAATGGCACAGGGTGAGGTAAAGTTGGTAGATTAGCGTGCTGACACAATCACCATGATCAAATCATTTGAATCGTAATCGGTTCCATGCTCTTTGATTGCAAATTTTGTGTGCAAGATAAAATGTAGCTGCGGCGGGAAATAAATTTACATTA]
consensusID : consensus_5674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence
[CAGAATCGCACGAGGTNGTATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTGGAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCGGACCGGTCGAGTATTCTCGTGAACAATGCCGGCATCTTGCNCTACCAGCTTCTCCCAGGATGCGCTTCCATCGCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAAGCGTTCATCGGACAGGCATGATCCGACGGCGGAAGGGACACATCGTAGCGANTTAGNTCGATACGCCCGGC]
[+] EMBL BX469017 [CAGAATCGCACGAGGTNGTATACTGTGAGAAGTGATTTTGCCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTGGAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCGGACCGGTCGAGTATTCTCGTGAACAATGCCGGCATCTTGCNCTACCAGCTTCTCCCAGGATGCGCTTCCATCGCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGACCACACAAAGCGTTCATCGGACAGGCATGATCCGACGGCGGAAGGGACACATCGTAGCGANTTAGNTCGATACGCCCGGC]
[+] EMBL BX628100 [ GAGAAGTGATTTTGCCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTGGAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAACTAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCT GGTGTTTGCCTTCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAAAAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGATCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGAACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGGTTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCGGCCCGGTCGA TATTCTCGTGAACAATGCCGGCATCTTGCc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5674#0 TCTCAATGCGGCGCTGATTCAGTAGCTTCAGTTTCATCGATACTGTGAGAAGTGATTTTG 60
consensus_5674#1 -----------------CAGAATCGCACGAGGTNG---TATACTGTGAGAAGTGATTTTG 40
* * ** ** * *********************
consensus_5674#0 CCGTGCCGTGCAGTGTTTTTTTTTCTTTCTTCAATTCCCTCCCCAAACGATGACAGCTCC 120
consensus_5674#1 CCGTGCCGTGCAGTGGTTTTTTTTCTTTCTTTAATTCCCTCCCCAAACGATGACAGCCTG 100
*************** *************** *************************
consensus_5674#0 GAACACCGATCTTCACCTTACCCTGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAAC 180
consensus_5674#1 GAACACCGATCGTCACCTTACCCAGCCCTACGAATGGGCTGAACCGGTGCCGCTTAAAAC 160
*********** *********** ************************************
consensus_5674#0 TAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGG-TGTTTGCCT 239
consensus_5674#1 TAGCCTACAGCGTGCGAGGGAAGTGTTCGCGACGCTGCTTAACCTGCTGGGTGTTTGCCT 220
************************************************** *********
consensus_5674#0 TCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAA 299
consensus_5674#1 TCGAATCGGTGCCCCTCTGGTGGGAAACGCTGGTCGCACAGTTTGTCACGCCGAGCTCAA 280
************************************************************
consensus_5674#0 AAGACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGA 359
consensus_5674#1 AAAACATATCCGGCCAGACGGCACTGGTGACGGGTGGTGCGAACGGGCTGGGACAGTCGA 340
** *********************************************************
consensus_5674#0 TCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGA 419
consensus_5674#1 TCGCAATCGCACTGGCCAAGGAGGGCTGCAACGTGGCCGTAGTGGATGTGGACGAAACGA 400
************************************************************
consensus_5674#0 ACGCACGGGAAACGGCGGCCAACCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGG 479
consensus_5674#1 ACGCACGGAAAACGGTAGCCAGCCTTCGCCGCTACAACGTGTCCGCCGAGGCGTACAAGG 460
******** ****** **** **************************************
consensus_5674#0 TTGACGTTTCGGACTACGAAGCAGTCCGCCAGCTGGGACGCGACGTGGAACGAGATCTCG 539
consensus_5674#1 TTGATGTTTCGGACTACGAGGCAGTCCGCCAGCTGGGACGCGACGTCGAACGAGATCTCG 520
**** ************** ************************** *************
consensus_5674#0 GCCCGGTCGA-TATTCTCGTGAACAATGCCGGCATCTTGCC-TACCAGCTTCTCCCAGGA 597
consensus_5674#1 GACCGGTCGAGTATTCTCGTGAACAATGCCGGCATCTTGCNCTACCAGCTTCTCCCAGGA 580
* ******** ***************************** ******************
consensus_5674#0 TGCGCTACCATC-CCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGA 656
consensus_5674#1 TGCGCTTCCATCGCCACATCGAACGAAGCATGGGAGTGAACGTGCTGTCAAGCGTTTGGA 640
****** ***** ***********************************************
consensus_5674#0 CCACACAAACC-TTCATCG-ACAG-CATGATCCGACGGCGGAAGGGACACATCGTAGCGA 713
consensus_5674#1 CCACACAAAGCGTTCATCGGACAGGCATGATCCGACGGCGGAAGGGACACATCGTAGCGA 700
********* * ******* **** ***********************************
consensus_5674#0 TT-AGCTCGAT-CGCCGGCTACATCGCCCCGGGGTGGGCAAAGACGTACGCCACGACCAA 771
consensus_5674#1 NTTAGNTCGATACGCCCGGC---------------------------------------- 720
* ** ***** **** *
consensus_5674#0 GTTTGCGCTGCGCGGCTTCATGGATGCGCTCGAGGACGATCTATATCTGCGGGGACAGGC 831
consensus_5674#1 ------------------------------------------------------------
consensus_5674#0 GAACCATGTGCACACTACGACCGTGTTTCCTTTCGCGTTCAACACGCGCAAACAGGCGAT 891
consensus_5674#1 ------------------------------------------------------------
consensus_5674#0 CAGTTTGCTGAAAGATGCGTCAGGTCTTACTCGTCTACCAATCTACGAGCCGGCCATGCT 951
consensus_5674#1 ------------------------------------------------------------
consensus_5674#0 CGGTGAGACGGTGGTGAGAGCGATTAAAACAAACCAGCGCAAGGTGGTAGTGCCGGAGGT 1011
consensus_5674#1 ------------------------------------------------------------
consensus_5674#0 GTTGAAACCGTACCAGCTGTCCATTTATGAGAATCTACCCATTAAAATTCGCCAGCTATT 1071
consensus_5674#1 ------------------------------------------------------------
consensus_5674#0 GACGCGAACAATGGCACAGGGTGAGGTAAAGTTGGTAGATTAGCGTGCTGACACAATCAC 1131
consensus_5674#1 ------------------------------------------------------------
consensus_5674#0 CATGATCAAATCATTTGAATCGTAATCGGTTCCATGCTCTTTGATTGCAAATTTTGTGTG 1191
consensus_5674#1 ------------------------------------------------------------
consensus_5674#0 CAAGATAAAATGTAGCTGCGGCGGGAAATAAATTTACATTA 1232
consensus_5674#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||