These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence [TTAAAATATACACATTTTCGACATTCGAATCCGGCACACACGTTGCTACGTACACACACAACGGTGTAAGATATAACTTTACAAGTACACGATACTACGTTAGCTCTAATATATATCTGTATGTGTGTGTGTGTGTAGTTCCATGGGATGACTGTGCGCATACTATGCATATACATTTCACAAAAGCACATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGGGTGTAGCTGCTGCTGGACTTCATTCTTCACCTCTTAATTGCACCTCTCTAACACACACACACACAGACCCACACTTCCTAACACTACAACGTCGCCCTTACTAAAAAGGATATATCGTTTGTCCGCAAACAATCGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTG----TGTGTGTCTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAATATAAAAAAAGGAAAACAGCACATTAACCGATGTTCCACCGCGAAAATAAAACCCCCACAGAATATGGGAGTTTTGGAAAGTATGAGAGGGAGGAGGCGAAGCACTGTCCTGCACCTTCATTTGCATTGCTTTTTTACCGCCATGTGTGTGTGTGTGTTTTTTTTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATTCCCTTTTACTCCTCTCGCGCACGTGTGTGTGTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGCGTTGTTTTGTTGCTTTCTTTTCCATCCTTTTTAATCACACACACTCTCTCTCTCTCTCACACAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGG] [+] EMBL CNS09QCF [TTAAAATATACACATTTTCGACATTCGAATCCGGCACACACGTTGCTACGTACACACACAACGGTGTAAGATATAACTTTACAAGTACACGATACTACGTTAGCTCTAATATATATCTGTATGTGTGTGTGTGTGTAGTTCCATGGGATGACTGTGCGCATACTATGCATATACATTTCACAAAAGCACATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGGGTGTAGCTGCTGCTGGACTTCATTCTTCACCTCTTAATTGCACCTCTCTAACACACACACACACAGACCCACACTTCCTAACACTACAACGTCGCCCTTACTAAAAAGGATATATCGTTTGTCCGCAAACAATCGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTG TGTGTGTCTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAATATAAAAAAAGGAAAACAGCACATTAACCGATGTTCCACCGCGAAAATAAAACCCCCACAGAATATGGGAGTTTTGGAAAGT ] [-] EMBL BM626864 [ TTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTGTGTATGTGTGTGTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAATATAAAAAAAGGAAAACAGCACATTAACCGATGTTCCACCGCGAAAATAAGACCCCCACAGAATATGGGAGTTTTGGAAAGTATGAGAGGGAGGAGGCGAAGCACTGTCCTGCACCTTCATTTGCATTGCTTTTTTACCGCCATGTGTGTGTGTGTGTTTTTTTTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATTCCCTTTTACTCCTCTCGCGCACGTGTGTGTGTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGCGTTGTTTTGTTGCTTTCTTTTCCATCCTTTTTAATCACACACACTCTCTCTCTCTCTCACACAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGG] consensusID : consensus_5686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 661 fasta sequence [CCGCCCACGCGTCCGCGCCCTTACTAAAAAGGATATATCGTTTGTCCTCAAACAAACGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTTCCGTGTTTATGTGTGTGTGTGTGTGTGCTAATTCCTAACGATGTTATAAAAAATATAAGAAAAAGGAAAACAGCACACTAACCGATGTTCCACCGCGAAAGTAACAATCCCACAGAATATGGGACTTTTGGAAAGTAAGAGAGGGAGGAGCGAAGCACTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCGCAATGTGTTTGTGTGTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCGTGTGTGGTTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGTGTTGTTTTGTTGCTTTCTTTTTCATCCCTTTTACTCCCTACACTCTCTCTCACACACACACACACACACGAAGTGCACCGTGTCCGACTACTTACTTACCCGCGGGTACTATACAGTTCCTCCATGCTATCCTACACACCTCCAATTTCCTCGTCCGGCTTTTCCGCCTTCACGACG] [+] EMBL BM594395 [CCGCCCACGCGTCCGCGCCCTTACTAAAAAGGATATATCGTTTGTCCTCAAACAAACGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTTCCGTGTTTATGTGTGTGTGTGTGTGTGCTAATTCCTAACGATGTTATAAAAAATATAAGAAAAAGGAAAACAGCACACTAACCGATGTTCCACCGCGAAAGTAACAATCCCACAGAATATGGGACTTTTGGAAAGTAAGAGAGGGAGGAGCGAAGCACTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCGCAATGTGTTTGTGTGTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCGTGTGTGGTTGTGTGACTGAGAGTTCGCGTCCCATGTTCCTGACTGGGTGTTGTTTTGTTGCTTTCTTTTTCATCCCTTTTACTCCCTACACTCTCTCTCACACACACACACACACACGAAGTGCACCGTGTCCGACTACTTACTTACCCGCGGGTACTATACAGTTCCTCCATGCTATCCTACACACCTCCAATTTCCTCGTCCGGCTTTTCCGCCTTCACGACG] [-] EMBL BM630115 [ CTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCGCAATGTGTTTGTGTGTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAGTATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATTTTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5686#0 TTAAAATATACACATTTTCGACATTCGAATCCGGCACACACGTTGCTACGTACACACACA 60 consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 ACGGTGTAAGATATAACTTTACAAGTACACGATACTACGTTAGCTCTAATATATATCTGT 120 consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 ATGTGTGTGTGTGTGTAGTTCCATGGGATGACTGTGCGCATACTATGCATATACATTTCA 180 consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 CAAAAGCACATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGGGTGTAGCTGCTG 240 consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 CTGGACTTCATTCTTCACCTCTTAATTGCACCTCTCTAACACACACACACACAGACCCAC 300 consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 ACTTCCTAACACTACAACGTCGCCCTTACTAAAAAGGATATATCGTTTGTCCGCAAACAA 360 consensus_5686#1 -----CCGCCCACGCGTCCGCGCCCTTACTAAAAAGGATATATCGTTTGTCCTCAAACAA 55 * * * * ******************************** ******* consensus_5686#0 TCGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTGCTGTGTTTGTGTGTGTGT 420 consensus_5686#1 ACGCTTCTTAAAATCATTACCAAGAACAATATGGTAATCTTTCCGTGTTTATGTGTGTGT 115 **************************************** * ****** ********* consensus_5686#0 CTGTGTGTGCGTGCTAATTCCTAACGATGTTTTAAAAA-TATAA-AAAAAGGAAAACAGC 478 consensus_5686#1 ----GTGTGTGTGCTAATTCCTAACGATGTTATAAAAAATATAAGAAAAAGGAAAACAGC 171 ***** ********************* ****** ***** *************** consensus_5686#0 ACATTAACCGATGTTCCACCGCGAAAATAAAACCCCCACAGAATATGGGAGTTTTGGAAA 538 consensus_5686#1 ACACTAACCGATGTTCCACCGCGAAAGTAACAATCCCACAGAATATGGGACTTTTGGAAA 231 *** ********************** *** * **************** ********* consensus_5686#0 GTATGAGAGGGAGGAGGCGAAGCACTGTCCTGCACCTTCATTTGCATTGCTTTTTTACCG 598 consensus_5686#1 GTAAGAGAGGGAGGAG-CGAAGCACTGTCCTGCACCTTCATTTGCTTTGCTTTTTTACCG 290 *** ************ **************************** ************** consensus_5686#0 CCATGTGTGTGTGTGTGTTTTTTTTTTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAG 658 consensus_5686#1 CAATGTGTTTGTGTGT---------TTTTACAGATTGTCCCTCCTTAATTTCCTCCTGAG 341 * ****** ******* *********************************** consensus_5686#0 TATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATT 718 consensus_5686#1 TATTTAAGAGAACCGTGTTCGTTCGCATCGAGTCCCGCTCTCCACATGAAAACTGCCATT 401 ************************************************************ consensus_5686#0 TTGCTGCTCATTCCCTTTTACTCCTCTCGCGCACGTGTGTGTGTGTGTGACTGAGAGTTC 778 consensus_5686#1 TTGCTGCTCATCCCCGTTTGCTCCTCTGGCGCGCGTGTGTGGTTGTGTGACTGAGAGTTC 461 *********** *** *** ******* **** ******** ***************** consensus_5686#0 GCGTCCCATGTTCCTGACTGGGCGTTGTTTTGTTGCTTTCTTTTCCATCCTTTTTAATCA 838 consensus_5686#1 GCGTCCCATGTTCCTGACTGGGTGTTGTTTTGTTGCTTTCTTTTTCATCCCTTTTACTC- 520 ********************** ********************* ***** ***** ** consensus_5686#0 CACACACTCTCTCTCTCTCTCACACAAACTCTCT---CTCTCTCTCTCTCTCT-CTCTCT 894 consensus_5686#1 CCTACACTCTCTCTCACACACACACACACACACGAAGTGCACCGTGTCCGACTACTTACT 580 * ************ * * ****** ** * * * * * ** ** ** ** consensus_5686#0 CTCTCTCTCTCTCTCT-CTCTCTCTCCGG------------------------------- 922 consensus_5686#1 TACCCGCGGGTACTATACAGTTCCTCCATGCTATCCTACACACCTCCAATTTCCTCGTCC 640 * * * ** * * * **** consensus_5686#0 --------------------- consensus_5686#1 GGCTTTTCCGCCTTCACGACG 661 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||