cluster # 5688

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Anopheles gambiae
cluster # 5688 cluster # 5688 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5688#0 length = 672 sequences # 2

consensus_5688#1 length = 628 sequences # 1
consensus_5688#2 length = 574 sequences # 1

consensusID : consensus_5688#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence

                              [TCCTAATATCTGAGCTAATATCTCGAGAGCCAATACGAAGGACATTCTTGATCAAACAATCTCACTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCTCACGCTGGCTTAATAG]

[+] EMBL BM654664             [TCCTAATATCTGAGCTAATATCTCGAGAGCCAATACGAAGGACATTCTTGATCAAACAATCTCACTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCTCACGCTGGCTTAATAG]
[+] EMBL BM595532             [                ccgATCT GAGAGCCAATACGAAGGACATTCTTGAACAAACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGGATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAGACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGAAAGAAAATCCTCACGCTGGCT      ]




>consensus_5688#0
TCCTAATATCTGAGCTAATATCTCGAGAGCCAATACGAAGGACATTCTTGATCAAACAAT
CTCACTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTC
ATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATC
AAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAG
TAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATC
ATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCC
GGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAG
AATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCG
ATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTA
AAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAG
ATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCTCACG
CTGGCTTAATAG

consensusID : consensus_5688#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCGCCCACGCGTCCGCTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCCTCACGCTGGCTTAATAGACGA]

[+] EMBL BM608557             [CCGCCCACGCGTCCGCTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAAAAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCCTCACGCTGGCTTAATAGACGA]




>consensus_5688#1
CCGCCCACGCGTCCGCTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCC
AAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAA
TGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAG
CGGGAGACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAA
GCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAAT
TGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCAC
TCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGAAATCCCAAA
AAATATATCCGATGAAGAAGATGAAGAAGATCCTTTGGATGCATTTATGGCTGGTATTGA
AGCGCAGGTTAAAATGGAAAAAAATAAAATTCCTCAACCTCATCTGGAACCGAAAAAAGG
TACACGAGGAGATATTGACGATGAAGATGACGAAGAAAGTTATTATCGATACATGCAAGA
AAATCCCTCACGCTGGCTTAATAGACGA

consensusID : consensus_5688#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [CCGCCCACGCGTCCGCTGAGCTAATATCTGAGAGCCAATACGAAGGACATTCTTGAACAAACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAGACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGTAAGTTCACGCATCTTCCCTCGTTCGAAACCATACGAAATCCCAAAAAATATATCCGATGAAGAAAGATGAAGAAGATCCTTTGGATGCATTTATGGGCTGGGATTGGAA]

[+] EMBL BM594563             [CCGCCCACGCGTCCGCTGAGCTAATATCTGAGAGCCAATACGAAGGACATTCTTGAACAAACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCGTGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAAGGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAGACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGGTTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAAACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACAGCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGTAAGTTCACGCATCTTCCCTCGTTCGAAACCATACGAAATCCCAAAAAATATATCCGATGAAGAAAGATGAAGAAGATCCTTTGGATGCATTTATGGGCTGGGATTGGAA]




>consensus_5688#2
CCGCCCACGCGTCCGCTGAGCTAATATCTGAGAGCCAATACGAAGGACATTCTTGAACAA
ACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCG
TGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAA
GGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAG
ACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGG
TTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAA
ACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACA
GCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGTAAGTTCACGCATCTT
CCCTCGTTCGAAACCATACGAAATCCCAAAAAATATATCCGATGAAGAAAGATGAAGAAG
ATCCTTTGGATGCATTTATGGGCTGGGATTGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5688#0      -----TCCTAATATCTGAGCTAATATCTCGAGAGCCAATACGAAGGACATTCTTGATCAA 55
consensus_5688#1      ----------------------------------------------------CCGCCCAC 8
consensus_5688#2      CCGCCCACGCGTCCGCTGAGCTAATATCTGAGAGCCAATACGAAGGACATTCTTGAACAA 60
                                                                            *  ** 

consensus_5688#0      ACAATCTCACTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCG 115
consensus_5688#1      GCG--TCCGCTAATACATCGTACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCG 66
consensus_5688#2      ACAATCTCACTAATACATCATACTCATTGCTTTCGTTGACGGGAAGATGCATCCAAATCG 120
                       *     * ********** ****************************************

consensus_5688#0      TGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAA 175
consensus_5688#1      TGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAA 126
consensus_5688#2      TGGTCATTTTAGTTTTCAAGTGCGGCGCAATCACGTAGTTCAGCAGCAACTAAATGCGAA 180
                      ************************************************************

consensus_5688#0      GGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAG 235
consensus_5688#1      GGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTGAGCGGGAG 186
consensus_5688#2      GGATCAAAGCCGTAGCTTCTCTCTTAATGCGGTGCCCCCCCCTAGTTCGTTAAGCGGGAG 240
                      *************************************************** ********

consensus_5688#0      ACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGG 295
consensus_5688#1      ACCAGTAAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGG 246
consensus_5688#2      ACCAGTTAATGCACCTCTACCTAAGCCATGTAATTATAGTTCTGGAATTTCAAAGCACGG 300
                      ****** *****************************************************

consensus_5688#0      TTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAA 355
consensus_5688#1      TTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAA 306
consensus_5688#2      TTATCATACTATGGAATCTTTACATCAGCATTCCAACGCTTCTCAATATTCAATTGTTAA 360
                      ************************************************************

consensus_5688#0      ACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACA 415
consensus_5688#1      ACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACA 366
consensus_5688#2      ACGCCGGGGCAGAACGGAAGACGAATATTTTGACGAAGACGACGAACCTGCCACTCAACA 420
                      ************************************************************

consensus_5688#0      GCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATG---------------- 459
consensus_5688#1      GCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATG---------------- 410
consensus_5688#2      GCTAGAATATATTCCCGCTCCTGGAAGCCCAACAGCCGCTGATGTAAGTTCACGCATCTT 480
                      ********************************************                

consensus_5688#0      --------------------AAATCCCAAAAAATATATCCGATGAAGAA-GATGAAGAAG 498
consensus_5688#1      --------------------AAATCCCAAAAAATATATCCGATGAAGAA-GATGAAGAAG 449
consensus_5688#2      CCCTCGTTCGAAACCATACGAAATCCCAAAAAATATATCCGATGAAGAAAGATGAAGAAG 540
                                          ***************************** **********

consensus_5688#0      ATCCTTTGGATGCATTTATGG-CTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAA 557
consensus_5688#1      ATCCTTTGGATGCATTTATGG-CTGGTATTGAAGCGCAGGTTAAAATGGAAAAAAATAAA 508
consensus_5688#2      ATCCTTTGGATGCATTTATGGGCTGGGATTGGAA-------------------------- 574
                      ********************* **** **** *                           

consensus_5688#0      ATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGAT 617
consensus_5688#1      ATTCCTCAACCTCATCTGGAACCGAAAAAAGGTACACGAGGAGATATTGACGATGAAGAT 568
consensus_5688#2      ------------------------------------------------------------
                                                                                  

consensus_5688#0      GACGAAGAAAGTTATTATCGATACATGCAAGAAAATCC-TCACGCTGGCTTAATAG---- 672
consensus_5688#1      GACGAAGAAAGTTATTATCGATACATGCAAGAAAATCCCTCACGCTGGCTTAATAGACGA 628
consensus_5688#2      ------------------------------------------------------------