These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence [CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACTTTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATT-ACTTTTAAAAAGATGCGTAAG-ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG-AACGGATACGTTGAAAGTGCAACA-AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA-TGAAACCGAAGCTTAAAGTGTATTGCGAGATATTATATTAATACTATACATCTATATATATACATACGTACACATCGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAAGTAGAAAGACGCAGGGGGGAAATTGAAGAACAAAAGCGTTAACAGATGTATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTGGGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGCTCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTTAGAGT] [+] EMBL BM619133 [CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACTTTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATT ACTTTTAAAAAGATGCGTAAG ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG AACGGATACGTTGAAAGTGCAACA AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA TGAAACCGAAGCT ] [+] EMBL BM655023 [ GGGCGACTTTGCACCAAACTCTTCGCTAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACGCACGAACCACTTAAATCCGATCACGAGGAGCAATGGTAATTAGGGCCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATT ACTTTTAAAAAGGTGCGTAAGAAAAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGGAAACGGATACGTTGAAAGTGCAACATGAACTATAGATGAAATGGTCGTGACAGAATACAAGCATCTATAC ATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA TGAAACCGAAGCTTAAAGTGTATTGCGAGATATTATATTAATACTAT ] [+] EMBL BX468718 [ GATGCGCATTCACTTTTAAAAAGATGCGTAAG ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG AACGGATACGTTGAAAGTGCAACA AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAAGTGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAAGTAGAAAGACGCAGGGGGGAAATTGAAGAACAAAAGCGTTAACAGATGTATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTGGGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGCTCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTTAGAGT] consensusID : consensus_5697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGCCCACGCGTCCGCTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAAAGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTGATCATGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAATAGAAAACGCAGGGGGGGAAATTGAAGAACAAAACTTAACAGATGTATCGGAAAGAAGAGATTAGAGAAAACATCTG] [+] EMBL BM595668 [CCGCCCACGCGTCCGCTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAAAGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTGATCATGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAATAGAAAACGCAGGGGGGGAAATTGAAGAACAAAACTTAACAGATGTATCGGAAAGAAGAGATTAGAGAAAACATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5697#0 CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACT 60 consensus_5697#1 ------------------------------------------------------------ consensus_5697#0 TTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTAT 120 consensus_5697#1 ----------------------------------------CCGCCCA-CGCGTCCGCTAT 19 * * * **** consensus_5697#0 AATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTA 180 consensus_5697#1 AATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTA 79 ************************************************************ consensus_5697#0 ATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATTACTTTTAAAA 240 consensus_5697#1 ATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAA 139 ******* *********** ******************************* ******** consensus_5697#0 AGATGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAA 300 consensus_5697#1 AGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAA 199 ** ********************************************************* consensus_5697#0 CAGCATTAAACGTTGAGGAACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGG 360 consensus_5697#1 CAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGG 259 ******** ********* ***************************************** consensus_5697#0 TCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTT 420 consensus_5697#1 TCGTGACAGAATTCAAGCATCTATACA-TATAACAGCCGGTATGAATCAAAGTCCGATTT 318 *************************** ******************************** consensus_5697#0 AACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTA 480 consensus_5697#1 AACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTA 378 ************************************************************ consensus_5697#0 AAGTGTATTGCGAGATATTATATTAATACTATACATCTATATATATACATACGTACACAT 540 consensus_5697#1 AAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACAT 438 ********** ************ ************************************ consensus_5697#0 CGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGA 600 consensus_5697#1 CGATATATATATA--AAGCTATATATTGTATACAGAGTAGAGTT-GATCATGCTGTGGGA 495 ************* ***************************** ***** ********* consensus_5697#0 GACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGA 660 consensus_5697#1 GACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGA 555 ************************************************************ consensus_5697#0 AAGAAAATAAAGTAGAAAGACGCAGGGGGG-AAATTGAAGAACAAAAGCGTTAACAGATG 719 consensus_5697#1 AAGAAAATAAA-TAGAAA-ACGCAGGGGGGGAAATTGAAGAACAAAAC--TTAACAGATG 611 *********** ****** *********** **************** ********** consensus_5697#0 TATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTG 779 consensus_5697#1 TATCGGAAAGAA-GAGATTAGAGAAAA-CATCTG-------------------------- 643 ************ ************** ****** consensus_5697#0 GGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGC 839 consensus_5697#1 ------------------------------------------------------------ consensus_5697#0 TCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTT 899 consensus_5697#1 ------------------------------------------------------------ consensus_5697#0 AGAGT 904 consensus_5697#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||