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Anopheles gambiae
cluster # 5697 cluster # 5697       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5697#0 length = 904 sequences # 3  
consensus_5697#1 length = 643 sequences # 1  

consensusID : consensus_5697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 904
fasta sequence
                              [CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACTTTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATT-ACTTTTAAAAAGATGCGTAAG-ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG-AACGGATACGTTGAAAGTGCAACA-AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA-TGAAACCGAAGCTTAAAGTGTATTGCGAGATATTATATTAATACTATACATCTATATATATACATACGTACACATCGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAAGTAGAAAGACGCAGGGGGGAAATTGAAGAACAAAAGCGTTAACAGATGTATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTGGGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGCTCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTTAGAGT]

[+] EMBL BM619133             [CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACTTTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATT ACTTTTAAAAAGATGCGTAAG ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG AACGGATACGTTGAAAGTGCAACA AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA TGAAACCGAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM655023             [                                                    GGGCGACTTTGCACCAAACTCTTCGCTAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACGCACGAACCACTTAAATCCGATCACGAGGAGCAATGGTAATTAGGGCCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATT ACTTTTAAAAAGGTGCGTAAGAAAAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGGAAACGGATACGTTGAAAGTGCAACATGAACTATAGATGAAATGGTCGTGACAGAATACAAGCATCTATAC ATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA TGAAACCGAAGCTTAAAGTGTATTGCGAGATATTATATTAATACTAT                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX468718             [                                                                                                                                                                                                                            GATGCGCATTCACTTTTAAAAAGATGCGTAAG ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG AACGGATACGTTGAAAGTGCAACA AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAAGTGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAAGTAGAAAGACGCAGGGGGGAAATTGAAGAACAAAAGCGTTAACAGATGTATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTGGGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGCTCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTTAGAGT]


>consensus_5697#0 CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACT TTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTAT AATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTA ATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATTACTTTTAAAA AGATGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAA CAGCATTAAACGTTGAGGAACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGG TCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTT AACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTA AAGTGTATTGCGAGATATTATATTAATACTATACATCTATATATATACATACGTACACAT CGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGA GACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGA AAGAAAATAAAGTAGAAAGACGCAGGGGGGAAATTGAAGAACAAAAGCGTTAACAGATGT ATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTGG GCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGCT CGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTTA GAGT



consensusID : consensus_5697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence
                              [CCGCCCACGCGTCCGCTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAAAGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTGATCATGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAATAGAAAACGCAGGGGGGGAAATTGAAGAACAAAACTTAACAGATGTATCGGAAAGAAGAGATTAGAGAAAACATCTG]

[+] EMBL BM595668             [CCGCCCACGCGTCCGCTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAAAGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTGATCATGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAATAGAAAACGCAGGGGGGGAAATTGAAGAACAAAACTTAACAGATGTATCGGAAAGAAGAGATTAGAGAAAACATCTG]


>consensus_5697#1 CCGCCCACGCGTCCGCTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCG ATCACGAAGAGCAATGGTAATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTG ATGCGCATTATTTTTAAAAAGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAAC TAATACACCACAAATGTAACAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAAC AAAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACATATAACAGCCGGTA TGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTT AAATGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATAT ATATACATACGTACACATCGATATATATATAAAGCTATATATTGTATACAGAGTAGAGTT GATCATGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAAC GAGGTATGAAGAAGAAAGAAAATAAATAGAAAACGCAGGGGGGGAAATTGAAGAACAAAA CTTAACAGATGTATCGGAAAGAAGAGATTAGAGAAAACATCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5697#0      CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACT 60
consensus_5697#1      ------------------------------------------------------------
                                                                                  

consensus_5697#0      TTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTAT 120
consensus_5697#1      ----------------------------------------CCGCCCA-CGCGTCCGCTAT 19
                                                                 *  * *       ****

consensus_5697#0      AATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTA 180
consensus_5697#1      AATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTA 79
                      ************************************************************

consensus_5697#0      ATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATTACTTTTAAAA 240
consensus_5697#1      ATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAA 139
                      ******* *********** ******************************* ********

consensus_5697#0      AGATGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAA 300
consensus_5697#1      AGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAA 199
                      ** *********************************************************

consensus_5697#0      CAGCATTAAACGTTGAGGAACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGG 360
consensus_5697#1      CAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGG 259
                      ******** ********* *****************************************

consensus_5697#0      TCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTT 420
consensus_5697#1      TCGTGACAGAATTCAAGCATCTATACA-TATAACAGCCGGTATGAATCAAAGTCCGATTT 318
                      *************************** ********************************

consensus_5697#0      AACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTA 480
consensus_5697#1      AACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTA 378
                      ************************************************************

consensus_5697#0      AAGTGTATTGCGAGATATTATATTAATACTATACATCTATATATATACATACGTACACAT 540
consensus_5697#1      AAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACAT 438
                      ********** ************ ************************************

consensus_5697#0      CGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGA 600
consensus_5697#1      CGATATATATATA--AAGCTATATATTGTATACAGAGTAGAGTT-GATCATGCTGTGGGA 495
                      *************  ***************************** ***** *********

consensus_5697#0      GACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGA 660
consensus_5697#1      GACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGA 555
                      ************************************************************

consensus_5697#0      AAGAAAATAAAGTAGAAAGACGCAGGGGGG-AAATTGAAGAACAAAAGCGTTAACAGATG 719
consensus_5697#1      AAGAAAATAAA-TAGAAA-ACGCAGGGGGGGAAATTGAAGAACAAAAC--TTAACAGATG 611
                      *********** ****** *********** ****************   **********

consensus_5697#0      TATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTG 779
consensus_5697#1      TATCGGAAAGAA-GAGATTAGAGAAAA-CATCTG-------------------------- 643
                      ************ ************** ******                          

consensus_5697#0      GGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGC 839
consensus_5697#1      ------------------------------------------------------------
                                                                                  

consensus_5697#0      TCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTT 899
consensus_5697#1      ------------------------------------------------------------
                                                                                  

consensus_5697#0      AGAGT 904
consensus_5697#1      -----
                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)