cluster # 5698

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Anopheles gambiae
cluster # 5698 cluster # 5698 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5698#0 length = 972 sequences # 3

consensus_5698#1 length = 604 sequences # 1

consensusID : consensus_5698#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 972
fasta sequence

                              [CCGCGCGTTTAAATAGCAATAGGTTTCATCAGAATCTGTGTTGTGTTCTCTTGTGCAAAGCATTAGGGGTGGGTAAGCCAAGGGTGTGTGCATGTGTGTTGGAAGGGGTTTTTAGAGGGACCGGTAGACCGATCGCGTGTGCGAATGATGAGGTTTTGAAACAGAGGTGAGCGCGTGTTCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTGCAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGC-GTATACGTGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTGAACACAAATTACATTATTTGAGAAGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCCCCACACACACACACTCATACACACACACACATATATAATGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTCCCGGAGATGGCATGGTAAGCAATAAACCGCAAGTGGACGGGCAGCGGTGGGTAGTGCGGCCGTAGTAGGACAGAGAAGGATACGAATTTTAAACAACAGGACACAAACGATGAGTTGGTTAGAGTGTGCTGAAACAGAGGTTGACTGGCATGGCAACCTCGCGCATACATATAAGCAAATACAGTGAGCAAAGCAGGCAGTAGTC]

[+] EMBL BM616747             [CCGCGCGTTTAAATAGCAATAGGTTTCATCAGAATCTGTGTTGTGTTCTCTTGTGCAAAGCATTAGGGGTGGGTAAGCCAAGGGTGTGTGCATGTGTGTTGGAAGGGGTTTTTAGAGGGACCGGTAGACCGATCGCGTGTGCGAATGATGAGGTTTTGAAACAGAGGTGAGCGCGTGTTCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTGCAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGC GTATACGTGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTGAACACAAATTACATTATTTGAGAAGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCCCCACACACACACACTCATACACAC                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX620942             [                                                                                                                                                                        gtGCGCGTGTTCGTAAANATTAAAACAAACATTGGCAAATAAAAAGCGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTACAAAACGC TTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAACAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGCGGTATta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM625036             [                                                                                                                                                                                                                                                                                                                                                                                                                   ccGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGC GTATACGTGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTGAACACAAATTACATTATTTGAG AGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCCCCACACACACACACACATACACACACACACATATATAATGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTCCCGGAGATGGCATGGTAAGCAATAAACCGCAAGTGGACGGGCAGCGGTGGGTAGTGCGGCCGTAGTAGGACAGAGAAGGATACGAATTTTAAACAACAGGACACAAACGATGAGTTGGTTAGAGTGTGCTGAAACAGAGGTTGACTGGCATGGCAACCTCGCGCATACATATAAGCAAATACAGTGAGCAAAGCAGGCAGTAGTC]




>consensus_5698#0
CCGCGCGTTTAAATAGCAATAGGTTTCATCAGAATCTGTGTTGTGTTCTCTTGTGCAAAG
CATTAGGGGTGGGTAAGCCAAGGGTGTGTGCATGTGTGTTGGAAGGGGTTTTTAGAGGGA
CCGGTAGACCGATCGCGTGTGCGAATGATGAGGTTTTGAAACAGAGGTGAGCGCGTGTTC
GTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCA
GGCCACCGAAAACAACCGCTGCTGCAAAACGCTTTAGGATATTATAGCAACGAATAAGGA
CATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAA
TGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTT
GTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGTGCTAACGTG
TTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTG
AACACAAATTACATTATTTGAGAAGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCC
CCACACACACACACTCATACACACACACACATATATAATGCTTTTTTAAATGCAGGATCA
TACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATA
TAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTCCCGGAGATGGCAT
GGTAAGCAATAAACCGCAAGTGGACGGGCAGCGGTGGGTAGTGCGGCCGTAGTAGGACAG
AGAAGGATACGAATTTTAAACAACAGGACACAAACGATGAGTTGGTTAGAGTGTGCTGAA
ACAGAGGTTGACTGGCATGGCAACCTCGCGCATACATATAAGCAAATACAGTGAGCAAAG
CAGGCAGTAGTC

consensusID : consensus_5698#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CCGCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTACAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGACCTGAACACAAATTACATTATTTGAGAGTGCGATTAGCCCGGTTATCTTTGACCCCCCCCCCCCCCCACACACACACACACACACACACACACATACACACACACACACATATATAGTGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTC]

[+] EMBL BM595830             [CCGCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCAGGCCACCGAAAACAACCGCTGCTACAAAACGCTTTAGGATATTATAGCAACGAATAAGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTTGTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGCTAACGTGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGACCTGAACACAAATTACATTATTTGAGAGTGCGATTAGCCCGGTTATCTTTGACCCCCCCCCCCCCCCACACACACACACACACACACACACACATACACACACACACACATATATAGTGCTTTTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTTTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAACCTC]




>consensus_5698#1
CCGCGTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATG
GCCAGGCCACCGAAAACAACCGCTGCTACAAAACGCTTTAGGATATTATAGCAACGAATA
AGGACATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCA
GCAATGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGC
ATTTGTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGCTAACG
TGTTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGACC
TGAACACAAATTACATTATTTGAGAGTGCGATTAGCCCGGTTATCTTTGACCCCCCCCCC
CCCCCACACACACACACACACACACACACACATACACACACACACACATATATAGTGCTT
TTTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGT
TTGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAA
CCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5698#0      CCGCGCGTTTAAATAGCAATAGGTTTCATCAGAATCTGTGTTGTGTTCTCTTGTGCAAAG 60
consensus_5698#1      ------------------------------------------------------------
                                                                                  

consensus_5698#0      CATTAGGGGTGGGTAAGCCAAGGGTGTGTGCATGTGTGTTGGAAGGGGTTTTTAGAGGGA 120
consensus_5698#1      ------------------------------------------------------------
                                                                                  

consensus_5698#0      CCGGTAGACCGATCGCGTGTGCGAATGATGAGGTTTTGAAACAGAGGTGAGCGCGTGTTC 180
consensus_5698#1      --------------------------------------------------------CCGC 4
                                                                                 *

consensus_5698#0      GTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCA 240
consensus_5698#1      GTAAAGATTAAAACAAACATTGGCCAATAAAAAGTGAAAGGAGGCCACCCAGCATGGCCA 64
                      ************************************************************

consensus_5698#0      GGCCACCGAAAACAACCGCTGCTGCAAAACGCTTTAGGATATTATAGCAACGAATAAGGA 300
consensus_5698#1      GGCCACCGAAAACAACCGCTGCTACAAAACGCTTTAGGATATTATAGCAACGAATAAGGA 124
                      *********************** ************************************

consensus_5698#0      CATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAA 360
consensus_5698#1      CATTTAAACAACAAACAACCATCCTTGGTGTGTTTGTGGGGTGTATATGCGCTGCAGCAA 184
                      ************************************************************

consensus_5698#0      TGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTT 420
consensus_5698#1      TGAAAAAATATCGCCCTCGGACACTTTCCCACGTCGCAGAACAAAGAGGAATGGGCATTT 244
                      ************************************************************

consensus_5698#0      GTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTGTGCTAACGTG 480
consensus_5698#1      GTCGCCTTTCAACAAAATTTAGCATAAGCGTATACGTGTGTGTGTGTGTG--CTAACGTG 302
                      **************************************************  ********

consensus_5698#0      TTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGAACTG 540
consensus_5698#1      TTTCCGTTTTGCAGAGAGACTGTGACTATAATATAAAAGAATATGTATACATATGACCTG 362
                      ******************************************************** ***

consensus_5698#0      AACACAAATTACATTATTTGAGAAGTGCGATTCGCCCGGTTATCTTTGACCCCCCCCCCC 600
consensus_5698#1      AACACAAATTACATTATTTGAGA-GTGCGATTAGCCCGGTTATCTTTGACCCCCCCCCCC 421
                      *********************** ******** ***************************

consensus_5698#0      CC----------------ACACACACACACTCATACACACACACACATATATAATGCTTT 644
consensus_5698#1      CCCCACACACACACACACACACACACACACATACACACACACACACATATATAGTGCTTT 481
                      **                ************  * ******************* ******

consensus_5698#0      TTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTT 704
consensus_5698#1      TTTAAATGCAGGATCATACACGTGGTCACCGAAATTCGTTTGGTTTTGGGTTAGCTCGTT 541
                      ************************************************************

consensus_5698#0      TGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAAC 764
consensus_5698#1      TGGTTTCGATACTATATAGCCTCTGGAAGTGTAATCGATGCCAGCATAGCACACCGAAAC 601
                      ************************************************************

consensus_5698#0      CTCCCGGAGATGGCATGGTAAGCAATAAACCGCAAGTGGACGGGCAGCGGTGGGTAGTGC 824
consensus_5698#1      CTC--------------------------------------------------------- 604
                      ***                                                         

consensus_5698#0      GGCCGTAGTAGGACAGAGAAGGATACGAATTTTAAACAACAGGACACAAACGATGAGTTG 884
consensus_5698#1      ------------------------------------------------------------
                                                                                  

consensus_5698#0      GTTAGAGTGTGCTGAAACAGAGGTTGACTGGCATGGCAACCTCGCGCATACATATAAGCA 944
consensus_5698#1      ------------------------------------------------------------
                                                                                  

consensus_5698#0      AATACAGTGAGCAAAGCAGGCAGTAGTC 972
consensus_5698#1      ----------------------------