These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1655 fasta sequence [GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTTTCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCAAAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGATTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTTTCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGTGTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCAGCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAAAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGA-TAAGGTATTGTAGAACAA-TTTTCTCTTA-GCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCACACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGGGTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAAAACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCTTTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAACTGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAATAGTTAATTGAAGCGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACAAAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTACAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACACAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAATTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATATGAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGAGAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATATACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCGAACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATAACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC] [+] EMBL BX468105 [GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTTTCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCAAAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGATTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTTTCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGTGTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCAGCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAAAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGACTAAGGTATTGTAGAACAA TTTTCTCTTAGGCTTACTCACATA ] [+] EMBL BX628528 [ AAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGA TAAGGTATTGTAGAACAATTTTTCTCTTA GCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCACACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGGGTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAAAACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCTTTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAACTGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAATAGTTAATTGAAGCGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACAAAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTACAG ] [+] EMBL BM601526 [ ccgTGGCAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAATGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTGCAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACACAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAATTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATATGAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGAGAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATATACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCGAACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATAACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC] consensusID : consensus_5737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CCGGTGAAAGACGAAGCGATCAGGAGTAGGGCGTTAGGAAAATTTTGGAACCCGCGCGGAAGGGTGCGTTATTGCGCCCGCCCCGGCTCCTGTGCAACTGAATAGTCTGATTTCTTTAGTTAATATAGCCTGTCCGAATAGAGAATGAGAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAACGCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCACCAAAACACGAACAGAACAGAATCTCTTCTCTTTGTTTCTCTCTTTCGATTAGGGTTGCTTAACGTGTATGTGTTTTACCTTTTGTTTTTTATTTTTCCGTTCTATTTCTAACTGTCCTTTCCTTAGAGTAAGTGACTAAGTATACCTTTCCTTCATCCGGTACTTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGTGTGACGAAATCAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTA] [+] EMBL BM602709 [CCGGTGAAAGACGAAGCGATCAGGAGTAGGGCGTTAGGAAAATTTTGGAACCCGCGCGGAAGGGTGCGTTATTGCGCCCGCCCCGGCTCCTGTGCAACTGAATAGTCTGATTTCTTTAGTTAATATAGCCTGTCCGAATAGAGAATGAGAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAACGCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCACCAAAACACGAACAGAACAGAATCTCTTCTCTTTGTTTCTCTCTTTCGATTAGGGTTGCTTAACGTGTATGTGTTTTACCTTTTGTTTTTTATTTTTCCGTTCTATTTCTAACTGTCCTTTCCTTAGAGTAAGTGACTAAGTATACCTTTCCTTCATCCGGTACTTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGTGTGACGAAATCAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5737#0 GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAA 60 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 CAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTT 120 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 TCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCA 180 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 AAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGA 240 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 TTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTT 300 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 TCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGT 360 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 GTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCA 420 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 GCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAA 480 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 AAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCT 540 consensus_5737#1 ----------------------------------------CCGGTGAAAGACGAAGCGAT 20 **** ** ** * * consensus_5737#0 -AGGAG-AGAAAATTCAAAAAATCGTACTGAAGTTATATTGATAAGGTATTGTAGAACAA 598 consensus_5737#1 CAGGAGTAGGGCGTTAGGAAAATTTTG--GAACCCGCGCGGA-AGGGTGCGTTATTGCGC 77 ***** ** ** ***** * *** ** * *** ** * consensus_5737#0 TTTTCTCTTAGCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCAC 658 consensus_5737#1 CCGCCCCGGCTCCTGTGCAACTGAATAGT-CTGATTTCTTTAGTTAATATAGCCTGTCCG 136 * * * * ** * ** * * * * ** * ** ** * consensus_5737#0 ACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGG 718 consensus_5737#1 AATAGAGAATGA------GAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAAC 190 * * * *** **** * * ** * **** * * ** consensus_5737#0 GTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAA 778 consensus_5737#1 GCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCAC------------CAA 238 * * * * * **** **** * * ** ** ** consensus_5737#0 AACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCT 838 consensus_5737#1 AACACGAACAGAACAGA-ATCTCTTCTCTTTGTT--TCTCTCTTTCGATTAGGGTTG-CT 294 ***** * ***** * * * * * * * * * * * *** **** ** consensus_5737#0 TTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAAC 898 consensus_5737#1 TAACGTGT------ATGTGTTTTAC-CTTTTGTTTTTTATTTTTCCGTTCTATTTCTAAC 347 * * *** ** * ** * ** ***** ** * * * * * * **** consensus_5737#0 TGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAA 958 consensus_5737#1 TGTCCTTTCCTTAGAGTAAGT------GACTAAGTATACCTTTC-CTTC--ATCCGGTAC 398 *** *** *** * * ** ** ** * * * * **** * *** consensus_5737#0 TAGTTAATTGAAG---CGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACA 1015 consensus_5737#1 TTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGT 458 * * * **** * **** * * * * * * * * *** consensus_5737#0 AAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGA 1075 consensus_5737#1 GTGACGAAATCAAGGAAACGAAAAAT-------AGATTCCACGTTTTAGGG-------AA 504 * * * * * *** * **** ** ** ** * consensus_5737#0 TATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAA 1135 consensus_5737#1 AAAACAACCACCAAAT-TCTTAGCCCAGTA------------------------------ 533 * * * * ** * ** ** * * consensus_5737#0 ACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATG 1195 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 TACCAAGGTACAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACA 1255 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 CAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAA 1315 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 TTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATAT 1375 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 GAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGA 1435 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 GAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATA 1495 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 TACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCG 1555 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 AACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATA 1615 consensus_5737#1 ------------------------------------------------------------ consensus_5737#0 ACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC 1655 consensus_5737#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||