cluster # 5748

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Anopheles gambiae
cluster # 5748 cluster # 5748 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5748#0 length = 673 sequences # 3

consensus_5748#1 length = 665 sequences # 1

consensusID : consensus_5748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 673
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGACACACGCGCGTGAAAGAAACCCGTGCGCACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGCTAGCCAAATTTACCCAAAATCACCTCGACAAACCAAAACCAAATCACGCGAAAGCAGCTCCAAACTCCCTCGACTGTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACCTTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATTGTTTAATATATCCCCCGTTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAGCAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGTGGCGTGAAGTAACGTGCTCTCGAAATCGCTCAGCGCCGAAAAATTTGGCCCGTGCTACTGCTACTGCTGCGTTTGCATAATCGCCGTAAGCGAGCGAAGGTAGTCCAGAAGTGTTACTGGTTTTGTAAGTGTGTGTTGCTAGCAGCTCCCTTTCCGAAAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTGTGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGGTGGGGGCCTTTAG]

[+] EMBL BM602342             [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGACACACGCGCGTGAAAGAAACCCGTGCGCACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGCTAGCCAAATTTACCCAAAATCACCTCGACAAACCAAAACCAAATCACGCGAAAGCAGCTCCAAACTCCCTCGACTGTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACCTTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATTGTTTAATATATCCCCCGTTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAGCAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGTGGCGTGAAGTAACGTGCTCTCGAAATCGCTCAGCGCCGAAAAATTTGGCCCGTGCTACTGCTACTGCTGCGTTTGCATAATCGCCGTAAGCGAGCGAAGGTAGTCCAGAAGTGTTACTGGTTTTGTAAGTGTGTGTTGCTAGCAGCTCCCTTTCCGAAAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTGTGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGGTGGGGGCCTTTAG]
[+] EMBL BM635737             [                  ccgccttgtGCAAGACACACGCGCGTGAAAGAAACCCGTGCGCACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGCTAGCCAAATTTACCCAAAATCACCTCGACAAACCAAAACCAAATCACGCGAAAGCAGCTCCAAACTCCCTCGACTGTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACCTTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATTGTTTAATATATCCCCCGTTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAGCAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGTGGCGTGAAGTAACGTGCTCTCGAAATCGCTCAGCGCCGAAAAATTTGGCCCGTGCTACTGCTACTGCTGCGTTTGCATAATCGCCGTAAGCGAGCGAAGGTAGTCCAGAAGTGTTACTGGTTTTGTAAGTGTGTGTTGCTAGCAGCTCCCTTTCCGAAAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTGTGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGG             ]
[+] EMBL BM643032             [                                                                                 GTGCGTGCAGTTTTCCTTTTTTGCTAGCCAAATTTACCCAAAATCACCTCGACAAACCAAAACCAAATCACGCGAAAGCAGCTCCAAACTCCCTCGACTGTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACCTTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATTGTTTAATATATCCCCCGTTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAGCAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGTGGCGTGAAGTAACGTGCTCTCGAAATCGCTCAGCGCCGAAAAATTTGGCCCGTGCTACTGCTACTGCTGCGTTTG                                                                                                                                                                                                   ]




>consensus_5748#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGACACACGCGCGTGAAAGAAACCCGTGCG
CACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGCTAGCCAAATTTACCC
AAAATCACCTCGACAAACCAAAACCAAATCACGCGAAAGCAGCTCCAAACTCCCTCGACT
GTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACC
TTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATTGTTTAATATATCCCCCG
TTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAG
CAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGTGGCGTGAAGTAACGTGC
TCTCGAAATCGCTCAGCGCCGAAAAATTTGGCCCGTGCTACTGCTACTGCTGCGTTTGCA
TAATCGCCGTAAGCGAGCGAAGGTAGTCCAGAAGTGTTACTGGTTTTGTAAGTGTGTGTT
GCTAGCAGCTCCCTTTCCGAAAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTG
TGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGG
TGGGGGCCTTTAG

consensusID : consensus_5748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGTGCGCACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGTTAGCCAAATTTACCCAAAATCACCTCGACAAACCAACACCAAATCACGCGAAAGCAGCTCCAAACTCCCCCGACTGTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACCTTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATCAGTAATATATCCCCCGTTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAGCAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGCGTGAAGTAACGTGCTCTCGAAATCGCTCAACGCCGAAAAATTTGGCCCGTGCTACTGCTGCTGCTGCGTTTGCATAATCGCCGAGCGAAGGTAGTCCAGAAGTGTTACTGATTTTGTAAGTGTGTGTTGCTAGCAGCTCCCTTTCCAAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTGTGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGGCGGGGGCCTTCAGATTGCCTTATAGAGCGAAAGCAGTTGCTTCC]

[+] EMBL BM643466             [CCGCGGACGCGTGGGCGGACGCGTGGGCGTGCGCACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGTTAGCCAAATTTACCCAAAATCACCTCGACAAACCAACACCAAATCACGCGAAAGCAGCTCCAAACTCCCCCGACTGTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACCTTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATCAGTAATATATCCCCCGTTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAGCAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGCGTGAAGTAACGTGCTCTCGAAATCGCTCAACGCCGAAAAATTTGGCCCGTGCTACTGCTGCTGCTGCGTTTGCATAATCGCCGAGCGAAGGTAGTCCAGAAGTGTTACTGATTTTGTAAGTGTGTGTTGCTAGCAGCTCCCTTTCCAAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTGTGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGGCGGGGGCCTTCAGATTGCCTTATAGAGCGAAAGCAGTTGCTTCC]




>consensus_5748#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGTGCGCACACACACATCGTGTTAATCGTGCGT
GCAGTTTTCCTTTTTTGTTAGCCAAATTTACCCAAAATCACCTCGACAAACCAACACCAA
ATCACGCGAAAGCAGCTCCAAACTCCCCCGACTGTTACAAATGTAGTCCCACGGGGTGTA
TCCGTAGTTGCTATATATTACCTTCGGTTTACCTTACGTATTGTTTTTTGTGTGTGTTAT
TGTTGTGTAGTTTATCAGTAATATATCCCCCGTTTAACGACCGTTCTCTGTCGGTAGTGT
CGTGTCAATCGGAAGGATCCCATAAAACACAGCAAGTTATATCAGGTTCTGCTGTCGTTC
CTTTCGGTGGGTGGCGTGAAGTAACGTGCTCTCGAAATCGCTCAACGCCGAAAAATTTGG
CCCGTGCTACTGCTGCTGCTGCGTTTGCATAATCGCCGAGCGAAGGTAGTCCAGAAGTGT
TACTGATTTTGTAAGTGTGTGTTGCTAGCAGCTCCCTTTCCAAATCCGATCCGACCAGAG
CGACGACACGCGAAGAAAGTGTGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGA
AGTGTCTTTCGTCGTCCCAGGCGGGGGCCTTCAGATTGCCTTATAGAGCGAAAGCAGTTG
CTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5748#0      CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGACACACGCGCGTGAAAGAAACCCGTGCG 60
consensus_5748#1      -------------------------CCGCG-GACGCGTGGGCG-GACGCGTGGGCGTGCG 33
                                               * **  *** *  * *** **        ******

consensus_5748#0      CACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGCTAGCCAAATTTACCC 120
consensus_5748#1      CACACACACATCGTGTTAATCGTGCGTGCAGTTTTCCTTTTTTGTTAGCCAAATTTACCC 93
                      ******************************************** ***************

consensus_5748#0      AAAATCACCTCGACAAACCAAAACCAAATCACGCGAAAGCAGCTCCAAACTCCCTCGACT 180
consensus_5748#1      AAAATCACCTCGACAAACCAACACCAAATCACGCGAAAGCAGCTCCAAACTCCCCCGACT 153
                      ********************* ******************************** *****

consensus_5748#0      GTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACC 240
consensus_5748#1      GTTACAAATGTAGTCCCACGGGGTGTATCCGTAGTTGCTATATATTACCTTCGGTTTACC 213
                      ************************************************************

consensus_5748#0      TTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATTGTTTAATATATCCCCCG 300
consensus_5748#1      TTACGTATTGTTTTTTGTGTGTGTTATTGTTGTGTAGTTTATCAGT-AATATATCCCCCG 272
                      ******************************************   * *************

consensus_5748#0      TTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAG 360
consensus_5748#1      TTTAACGACCGTTCTCTGTCGGTAGTGTCGTGTCAATCGGAAGGATCCCATAAAACACAG 332
                      ************************************************************

consensus_5748#0      CAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTGGTGGCGTGAAGTAACGTGC 420
consensus_5748#1      CAAGTTATATCAGGTTCTGCTGTCGTTCCTTTCGGTGGGTG---GCGTGAAGTAACGTGC 389
                      *****************************************   ****************

consensus_5748#0      TCTCGAAATCGCTCAGCGCCGAAAAATTTGGCCCGTGCTACTGCTACTGCTGCGTTTGCA 480
consensus_5748#1      TCTCGAAATCGCTCAACGCCGAAAAATTTGGCCCGTGCTACTGCTGCTGCTGCGTTTGCA 449
                      *************** ***************************** **************

consensus_5748#0      TAATCGCCGTAAGCGAGCGAAGGTAGTCCAGAAGTGTTACTGGTTTTGTAAGTGTGTGTT 540
consensus_5748#1      TAATCGC------CGAGCGAAGGTAGTCCAGAAGTGTTACTGATTTTGTAAGTGTGTGTT 503
                      *******      ***************************** *****************

consensus_5748#0      GCTAGCAGCTCCCTTTCCGAAAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTG 600
consensus_5748#1      GCTAGCAGCTCCCTTTCC--AAATCCGATCCGACCAGAGCGACGACACGCGAAGAAAGTG 561
                      ******************  ****************************************

consensus_5748#0      TGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGG 660
consensus_5748#1      TGTGGGAAACATCTCGGAGAAAGTGGTACCTGAAGCTGAAGTGTCTTTCGTCGTCCCAGG 621
                      ************************************************************

consensus_5748#0      TGGGGGCCTTTAG------------------------------- 673
consensus_5748#1      CGGGGGCCTTCAGATTGCCTTATAGAGCGAAAGCAGTTGCTTCC 665
                       ********* **