These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence [AGGCAAAAAAGAAAACAAACAAACAAACAAACAAACACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTATCTCTCTGCGCAAACGTGCGCCGTAAAGACACACAGACAGACAGACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGCAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAGACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGGACAGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGCACTACATTGAGAAAAAGAGAGAAACAGGGAAAACAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTTAGTACAGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTGTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATAGGTCGCGACAAGACCGTTGTGATATATATTACCATATTAAATGTGAAAACAAAAAAAAAAAAAGGCCACATGTGCCCGAG] [+] EMBL CNS08F9D [AGGCAAAAAAGAAAACAAACAAACAAACAAACAAACACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTATCTCTCTGCGCAAACGTGCGCCGTAAAGACACACAGACAGACAGACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGCAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAGACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGGACAGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGCACTACATTGAGAAAAAGAGAGAAACAGGGAAAACAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTTAGTACAGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTGTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATAGGTCGCGACAAGACCGTTGTGATATATATTACCATATTAAATGTGAAAACAAAAAAAAAAAAAGGCCACATGTGCCCGAG] consensusID : consensus_5749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [GGCGGGGGAATTCCTCGGGAACTGTTGGCCTGCTGGATGCTTTATGTAAAACAAACAAACAAACAAACAAAAACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTTTCTCTCTGCGCAAACGTGCGCCGTAAAAACACACAGACAAACAAACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGGAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAAACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGCACAGGAAAGGTGAGGAGACGTGTATTTATTATTGCAAACAAACAAACAAAAAACGCAAAAACTGCAAACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGGACTACATTGAGAGAGAGAGAGAAACTTTGAAAAAAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTGAGTACGGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATCGGTCGCGCCGCCCCCCGTTGTGCTCTCT] [-] EMBL CNS08F9E [GGCGGGGGAATTCCTCGGGAACTGTTGGCCTGCTGGATGCTTTATGTAAAACAAACAAACAAACAAACAAAAACAGCAGGGACATGTGTTGTGGGGGGGCAGTGCGTGCAGCAGCAGCGCGCTTATCCTTTTTCTCTCTGCGCAAACGTGCGCCGTAAAAACACACAGACAAACAAACACACTTTGAGTGAAGGACAGAGTGAAAGGACTGTGAAATGGGAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCCATTAAACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGCACAGGAAAGGTGAGGAGACGTGTATTTATTATTGCAAACAAACAAACAAAAAACGCAAAAACTGCAAACAAGCATGAGGAGGGAAGGAGGAGGACAGGAAAGTGGGGAGGACTACATTGAGAGAGAGAGAGAAACTTTGAAAAAAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGGTTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTGAGTACGGGAAGCAGGCAATGGGGAGACAGCTCGGCAGCGAGATCCGGTGGATGTGGTTTGTGTGTTGTGCCACAGTTAAATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTATCCCTGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTGAAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATCGGTCGCGCCGCCCCCCGTTGTGCTCTCT] consensusID : consensus_5749#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [CCGGTGAGCGGCCGAGTCAACCGGGGACAGAGGACGCCACGACACTTTCTTTTGTCTGCATACCACCATCAACCATTACGATGGTAGGGGGAGCTCCAGAGGTGGGGGGTAGCAGGTATTTTAAGAGTAGAAAATTAATACAACCACACAATGGTCGATTTCTCTAGGAGTGGCCCCCCGAGTCGATCGGCGCGGCCCCAGTCTTACTGCGTACAGGCACGGATGCAACGAACGGAAGAGAGATGCGTTACAAAAGCTAGGAGATACATATGTATGTTGTGAAACAATTAGTGGAACCACTTTGTGATACATATATGAATTATATTTACAGATACATATTACTATTCGATGATTGTTGGGAAAAAAACACAGGTTATACAGGCGAATTGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAGAGAGAGAGAGAGAGAAATAGGGAAAAAAGAGACGAAAAATTAAAGGGAAATAGTGTGATAGAACTGCAAACGGTTCGAGTCCACGGGTGGCCGGTATAGAGAGAGAGTCAGTACGGGAAGAAGGCAGGGGAGAGACAGCTCGGCAGCGCGAGATTCGGTGGGTGGGTGTG] [+] EMBL BM618019 [CCGGTGAGCGGCCGAGTCAACCGGGGACAGAGGACGCCACGACACTTTCTTTTGTCTGCATACCACCATCAACCATTACGATGGTAGGGGGAGCTCCAGAGGTGGGGGGTAGCAGGTATTTTAAGAGTAGAAAATTAATACAACCACACAATGGTCGATTTCTCTAGGAGTGGCCCCCCGAGTCGATCGGCGCGGCCCCAGTCTTACTGCGTACAGGCACGGATGCAACGAACGGAAGAGAGATGCGTTACAAAAGCTAGGAGATACATATGTATGTTGTGAAACAATTAGTGGAACCACTTTGTGATACATATATGAATTATATTTACAGATACATATTACTATTCGATGATTGTTGGGAAAAAAACACAGGTTATACAGGCGAATTGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAGAGAGAGAGAGAGAGAAATAGGGAAAAAAGAGACGAAAAATTAAAGGGAAATAGTGTGATAGAACTGCAAACGGTTCGAGTCCACGGGTGGCCGGTATAGAGAGAGAGTCAGTACGGGAAGAAGGCAGGGGAGAGACAGCTCGGCAGCGCGAGATTCGGTGGGTGGGTGTG] consensusID : consensus_5749#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CCGGCATCAGTAGCGCGCTTATCCTTTATCTCTCTGCGCAAACACACACACAGCCACACTTTGAGTGAAGGATAGGAGTGAAGGGACTGTGAATTTAATGGCACATGATGTAGATTGTAGGTTTTGTTTTAGACCGCATTAGACGCGCGTGTAACAACAGTGATAAAAGAAACAAATGTTGCGGACGGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA] [+] EMBL BM602449 [CCGGCATCAGTAGCGCGCTTATCCTTTATCTCTCTGCGCAAACACACACACAGCCACACTTTGAGTGAAGGATAGGAGTGAAGGGACTGTGAATTTAATGGCACATGATGTAGATTGTAGGTTTTGTTTTAGACCGCATTAGACGCGCGTGTAACAACAGTGATAAAAGAAACAAATGTTGCGGACGGGAAAGGTGAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAAGCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5749#0 ------------------------------------------------------------ consensus_5749#1 ----------------------------------GGCGGGGGAATTCCTCGGGAACTGTT 26 consensus_5749#3 ------------------------------------------------------------ consensus_5749#2 CCGGTGAGCGGCCGAGTCAACCGGGGACAGAGGACGCCACGACACTTTCTTTTGTCTGCA 60 consensus_5749#0 ----------AGGCAAAAAAGAAAACAAACAAACA--AACAAACAAACACAGCAGGGACA 48 consensus_5749#1 GGCCTGCTGGATGCTTTATGTAAAACAAACAAACA--AACAAACAAAAACAGCAGGGACA 84 consensus_5749#3 ------------------------------------------------------------ consensus_5749#2 TACCACCATCAACCATTACGATGGTAGGGGGAGCTCCAGAGGTGGGGGGTAGCAGGTATT 120 consensus_5749#0 TGTGTTGTGGGGGGGCAGTGCGTGCA-GCAGCAGCGCGCTTATCCTT---TATCTCTCTG 104 consensus_5749#1 TGTGTTGTGGGGGGGCAGTGCGTGCA-GCAGCAGCGCGCTTATCCTT---TTTCTCTCTG 140 consensus_5749#3 --------------------CCGGCA-TCAGTAGCGCGCTTATCCTT---TATCTCTCTG 36 consensus_5749#2 TTAAGAGTAGAAAATTAATACAACCACACAATGGTCGATTTCTCTAGGAGTGGCCCCCCG 180 * ** ** * ** ** * * * * * consensus_5749#0 CGCAAACGTGCGCCGTAAAGACACACAGACAGACAGACACACTTTGAGTGAAGGACAG-A 163 consensus_5749#1 CGCAAACGTGCGCCGTAAAAACACACAGACAAACAAACACACTTTGAGTGAAGGACAG-A 199 consensus_5749#3 CGCAAAC-------------ACACACA------CAGCCACACTTTGAGTGAAGGATAGGA 77 consensus_5749#2 AGTCGATCGGCGCGGCCCCAGTCTTACTGCGTACAGGCACGGATGCAACGAACGGAAG-A 239 * * ** *** * * *** * ** * consensus_5749#0 GTGAAAGGACTGTGAAATGGCAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCC 223 consensus_5749#1 GTGAAAGGACTGTGAAATGGGAATGGCACATGATGTAGATTGTAGGTTTTGTTTTACGCC 259 consensus_5749#3 GTGAAGGGACTGTGAATT--TAATGGCACATGATGTAGATTGTAGGTTTTGTTTTAGACC 135 consensus_5749#2 GAGATGCG-TTACAAAAGCTAGGAGATACAT-ATGTATGTTGTGAAACAATTAGTGGAAC 297 * ** * * ** * **** ***** **** * * * consensus_5749#0 --ATTAGACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGGACAGGAAAGGT 281 consensus_5749#1 --ATTAAACGCGCGTATAACAACAGTGATAAAAGAAACAAATGTGGCGCACAGGAAAGGT 317 consensus_5749#3 GCATTAGACGCGCGTGTAACAACAGTGATAAAAGAAACAAATGTTGCGGACGGGAAAGGT 195 consensus_5749#2 CACTTTGTGATACATATATGAATTATATTTACAGATACATAT-TACTATTCGATGATTGT 356 ** * * ** ** * * * *** *** ** * * * ** consensus_5749#0 GAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAA 341 consensus_5749#1 GAGGAGACGTGTATTTATTATTGCAAACAAACAAACAAAAAACGCAAAAACTGCAAACAA 377 consensus_5749#3 GAGGAGACGTGTATGTATTATTGCAAACAAACAAACAAAAAACGCAAAGACTGCACACAA 255 consensus_5749#2 TGGGAAAAAAACACAGGTTAT-----ACAGGCGAAT------TGCAAAGACTGCACACAA 405 *** * * **** *** * ** ***** ****** **** consensus_5749#0 GCATGAGGAGGGA-AGGAGGAGGACAGGAAAGTGGGGAGCACTACATTGAGAAAAAGAGA 400 consensus_5749#1 GCATGAGGAGGGA-AGGAGGAGGACAGGAAAGTGGGGAGGACTACATTGAGAGAGAGAGA 436 consensus_5749#3 GCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGA 315 consensus_5749#2 GCATGAGGAAGGAGAGGAGGAGGACAGGAAAGTGGGGAGCACTACACTGAGAGAGAGAGA 465 ********* *** ************************* ****** ***** * ***** consensus_5749#0 GAAACAGGGAAAACAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGG 460 consensus_5749#1 GAAACTTTGAAAAAAGAGACGAAACATTAAAGGGAAATAGTGTGATAGAACTGTCAACGG 496 consensus_5749#3 GAGAGAGAGAGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 374 consensus_5749#2 GAGAGAGAGAGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 524 ** * ** * ***** * * ** ** * ** * ** *** * * consensus_5749#0 TTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTTAGTACAGGAAGCAGGCAATGGGG 520 consensus_5749#1 TTCGAGTCCACGGGCGGGTCGGTATGGAGAGAGAGTGAGTACGGGAAGCAGGCAATGGGG 556 consensus_5749#3 AGAGA------------------------------------------------------- 379 consensus_5749#2 AGAGAG-----AGAGAAGAAGAGAGAGAGAGAGAGAGAAATAGGGAAAAAAGAGACGAAA 579 ** consensus_5749#0 AG--ACAGCTCGGCAGCGAGATCCGG-TGGATGTGGTTTGTGTGTGTGTGCCACAGTTAA 577 consensus_5749#1 AG--ACAGCTCGGCAGCGAGATCCGG-TGGATGTGGTTTGTGTGT-TGTGCCACAGTTAA 612 consensus_5749#3 ------------------------------------------------------------ consensus_5749#2 AATTAAAGGGAAATAGTGTGATAGAACTGCAAACGGTTCGAGTCCACGGGTGGCCGGTAT 639 consensus_5749#0 ATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTAT-CCC 636 consensus_5749#1 ATTTTAAACCATTATTATTTGCCTTTTTCGTTCTCGTTGTAAGGCATCGTTTCTAT-CCC 671 consensus_5749#3 ------------------------------------------------------------ consensus_5749#2 AGAG-AGAGAGTCAGTACGGGAAGAAGGCAGGGGAGAGACAGCTCGGCAGCGCGAGATTC 698 consensus_5749#0 TGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTG 696 consensus_5749#1 TGAGGGCGAATGTGCCCTGTGTTGTGTGGTTTTTTGGGTTGAATTTTCATTTGGATTGTG 731 consensus_5749#3 ------------------------------------------------------------ consensus_5749#2 GGTGGGTGGGTGTG---------------------------------------------- 712 consensus_5749#0 AAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATA 756 consensus_5749#1 AAGAGCGGGCAGGGTGTCACCACAGGCAAAGCAAAAATATGGGCATAGAAGAAGTGTATC 791 consensus_5749#3 ------------------------------------------------------------ consensus_5749#2 ------------------------------------------------------------ consensus_5749#0 GGTCGCGACAAGACC-GTTGTGATATATATTACCATATTAAATGTGAAAACAAAAAAAAA 815 consensus_5749#1 GGTCGCGCCGCCCCCCGTTGTGCTCTCT-------------------------------- 819 consensus_5749#3 ------------------------------------------------------------ consensus_5749#2 ------------------------------------------------------------ consensus_5749#0 AAAAGGCCACATGTGCCCGAG 836 consensus_5749#1 --------------------- consensus_5749#3 --------------------- consensus_5749#2 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||