These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGATAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGGGCAAATGCCGTATATGATGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCACACTATTGTTAACATTTACGACAAAGTTTACTCGTACTTGCACGCAAGATAGGTAGCCTCCCAACCCGCAAAACCGTCTTTCGAAATTCGAAATACCATGTTTTCCCACCCCCCGTAGCGTTAATCTCCCTCTGTTACTCATACACCACACCACGTCGTACACCAACTAACAAACGGGTCCACGATTTT] [+] EMBL BM621346 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGATAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGGGCAAATGCCGTATATGATGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCACACTATTGTTAACATTTACGACAAAGTTTACTCGTACTTGCACGCAAGATAGGTAGCCTCCCAACCCGCAAAACCGTCTTTCGAAATTCGAAATACCATGTTTTCCCACCCCCCGTAGCGTTAATCTCCCTCTGTTACTCATACACCACACCACGTCGTACACCAACTAACAAACGGGTCCACGATTTT] consensusID : consensus_575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGGATCGTTACGATTGATACTAGAACCCAATGGACCAAGATGATACTAACAGAAAAGTTTTAAGAATCAGCATAGGAAATTGTTTCTGTTTTATATACATACATATCTATATGTATACTGAATGAAGACAACCAATAGTCAGCTAAAGGAAACACTATATTTATCTATAAAACCGAGGCATGATGGCAGGAAAAGTCAATGAGCCGGAACTGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGGTAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGTGCAAATGCCGTATATGATATACGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCA] [+] EMBL BM634775 [CCGGATCGTTACGATTGATACTAGAACCCAATGGACCAAGATGATACTAACAGAAAAGTTTTAAGAATCAGCATAGGAAATTGTTTCTGTTTTATATACATACATATCTATATGTATACTGAATGAAGACAACCAATAGTCAGCTAAAGGAAACACTATATTTATCTATAAAACCGAGGCATGATGGCAGGAAAAGTCAATGAGCCGGAACTGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGGTAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGTGCAAATGCCGTATATGATATACGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_575#0 ------------------------------------------------------------ consensus_575#1 CCGGATCGTTACGATTGATACTAGAACCCAATGGACCAAGATGATACTAACAGAAAAGTT 60 consensus_575#0 ------------------------------------------------------------ consensus_575#1 TTAAGAATCAGCATAGGAAATTGTTTCTGTTTTATATACATACATATCTATATGTATACT 120 consensus_575#0 ------------------------------------------------------------ consensus_575#1 GAATGAAGACAACCAATAGTCAGCTAAAGGAAACACTATATTTATCTATAAAACCGAGGC 180 consensus_575#0 ----CCGCCC-ACGCGTCCGCCCACGCGTCCGGTTAAAAGTTGAGCGTCACTTTTAAGGT 55 consensus_575#1 ATGATGGCAGGAAAAGTCAATGAGCCGGAACTGTTAAAAGTTGAGCGTCACTTTTAAGGT 240 ** * *** * * * **************************** consensus_575#0 ATCGCGTAGTCAGGTATATGTGGCAGAGTTAGATAAGCGTTCTCGAATCAACAAAGGTTT 115 consensus_575#1 ATCGCGTAGTCAGGTATATGTGGCAGAGTTAGGTAAGCGTTCTCGAATCAACAAAGGTTT 300 ******************************** *************************** consensus_575#0 TACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCT 175 consensus_575#1 TACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCT 360 ************************************************************ consensus_575#0 AAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCA 235 consensus_575#1 AAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCA 420 ************************************************************ consensus_575#0 AACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAG 295 consensus_575#1 AACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAG 480 ************************************************************ consensus_575#0 GTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTA 355 consensus_575#1 GTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTA 540 ************************************************************ consensus_575#0 CGTGATAATGTGGGCAAATGCCGTATATGAT----GGCACAGCAACACAACAACAAAGCA 411 consensus_575#1 CGTGATAATGTGTGCAAATGCCGTATATGATATACGGCACAGCAACACAACAACAAAGCA 600 ************ ****************** ************************* consensus_575#0 AAACTATAAACAAACATGATATAAACGGTGGTGCACACTATTGTTAACATTTACGACAAA 471 consensus_575#1 AAACTATAAACAAACATGATATAAACGGTGGTGCA------------------------- 635 *********************************** consensus_575#0 GTTTACTCGTACTTGCACGCAAGATAGGTAGCCTCCCAACCCGCAAAACCGTCTTTCGAA 531 consensus_575#1 ------------------------------------------------------------ consensus_575#0 ATTCGAAATACCATGTTTTCCCACCCCCCGTAGCGTTAATCTCCCTCTGTTACTCATACA 591 consensus_575#1 ------------------------------------------------------------ consensus_575#0 CCACACCACGTCGTACACCAACTAACAAACGGGTCCACGATTTT 635 consensus_575#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||