cluster # 5754

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5754 cluster # 5754 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5754#0 length = 962 sequences # 3

consensus_5754#1 length = 599 sequences # 1

consensusID : consensus_5754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 962
fasta sequence

                              [CCGCGCGAAACAGGAGGTAGACTATAAGGGCACGATATCATCATACAGAACAGGGGACAGAACAGTGACTCTGAGACAATGAGAGAACCACATTTATATGAAATATACTAGGAAAGCAAATATTGGGGAAAACGAAACAACAAAATCATTAAAAAGAACAATTTACCTAGCCTCTCTCTGGGAGGGCCTTTACACAACATAAACACCTGGCGTAACGCGACAATGAAGGAGCTGATGATGGAGGAGAGGACTGTAGGGAAGATGATGGAAGAAATATTAAACCAAAAAAAAAACAAACAAGTAAATTTTTCATTCTTGCTAATATTGTTGTATCGAACCCCATGTGTGTGCATTCGAGAATTTAGGAGGAGCACTGTGTGCACGAGATACAAGGTTTTCCGGGAGTTTTCGTAGCTGTGGGACACTTTATTGACTATTTCTTATTTGAAATGAACTTAATCTAACATGAATTGGACGCTATAGCACCCTTGTTGGACAAATCTAAGAGAAATTTCCATAGAGTCCAATTTTCTTCATATGAATTTCACTT-CCCATTAGAAAGAGTCAAGGAAATGTCCA-ACAACTATGAGAACCCCTGGAAAATCCTGTAAATAGCATGTACGTGAATGTAATATAATGAGTGAGTGTTGCCTTTCACTGGGTTAGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATGCAATGTGAATGTGTGTATGATGACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAACTGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGAATGTAATGAAGCACTTCAAATCTATGATCAGGTTCATCTACTACATTGAGTATTT]

[+] EMBL BM619958             [CCGCGCGAAACAGGAGGTAGACTATAAGGGCACGATATCATCATACAGAACAGGGGACAGAACAGTGACTCTGAGACAATGAGAGAACCACATTTATATGAAATATACTAGGAAAGCAAATATTGGGGAAAACGAAACAACAAAATCATTAAAAAGAACAATTTACCTAGCCTCTCTCTGGGAGGGCCTTTACACAACATAAACACCTGGCGTAACGCGACAATGAAGGAGCTGATGATGGAGGAGAGGACTGTAGGGAAGATGATGGAAGAAATATTAAACCAAAAAAAAAACAAACAAGTAAATTTTTCATTCTTGCTAATATTGTTGTATCGAACCCCATGTGTGTGCATTCGAGAATTTAGGAGGAGCACTGTGTGCACGAGATACAAGGTTTTCCGGGAGTTTTCGTAGCTGTGGGACACTTTATTGACTATTTCTTATTTGAAATGAACTTAATCTAACATGAATTGGACGCTATAGCACCCTTGTTGGACAAATCTAAGAGAAATTTCCATAGAGTCCAATTTTCTTCATATGAATTTCACTTCCCCATTAGAAAGAGTCAAGGAAATGTCCA ACAACTATGAGAACCCCTGGAAA                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM647525             [                                                                                                                                                                                                                                                                                                                                ccgATTGTTGTATCGAACCCCATGTGTGTGCATTCGAGAATTTAGGAGGAGCACTGTGTGCACGAGATACAAGGTTTTCCGGGAGTTTTCGTAGCTGTGGGACACTTTATTGACTATTTCTTATTTGAAATGAACTTAATCTAACATGAATTGGACGCTATAGCACCCTTGTTGGACAAATCTAAGAGAAATTTCCATAGAGTCCAATTTTCTTCATATGAATTTCACTT CCCATTAGAAAGAGTCAAGGAAATGTCCA ACAACTATGAGAACCCCTGGAAAATCCTGTAAATAGCATGTACGTGAATGTAATATAATGAGTGAGTGTTGCCTTTCACTGGGTTAGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATGCAATGTGAATGTGTGTATGATGACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAACTGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGAATGTAATGAAGCACTTCAAATCTATGATCAGGTTCATCTACTACATTGAGTATTT]
[+] EMBL BM623870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgTTCTTCATATGAATTTCACTT CCCATTACAAAGAGTCAAGGAAATGTCCATACAACTATGAGAACCCCTGGAAAATCCTGTAGATAGCATGTACGTGAATGTAATATAATGAGTGAGTGTTGCCTTTCACTGGGTTAGAGTTGGTATGAATGTATAGTGATCAATGAGGAGATCAATGCAATGTGAATGTGTGTATGATGACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAACTGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG                                                                                      ]




>consensus_5754#0
CCGCGCGAAACAGGAGGTAGACTATAAGGGCACGATATCATCATACAGAACAGGGGACAG
AACAGTGACTCTGAGACAATGAGAGAACCACATTTATATGAAATATACTAGGAAAGCAAA
TATTGGGGAAAACGAAACAACAAAATCATTAAAAAGAACAATTTACCTAGCCTCTCTCTG
GGAGGGCCTTTACACAACATAAACACCTGGCGTAACGCGACAATGAAGGAGCTGATGATG
GAGGAGAGGACTGTAGGGAAGATGATGGAAGAAATATTAAACCAAAAAAAAAACAAACAA
GTAAATTTTTCATTCTTGCTAATATTGTTGTATCGAACCCCATGTGTGTGCATTCGAGAA
TTTAGGAGGAGCACTGTGTGCACGAGATACAAGGTTTTCCGGGAGTTTTCGTAGCTGTGG
GACACTTTATTGACTATTTCTTATTTGAAATGAACTTAATCTAACATGAATTGGACGCTA
TAGCACCCTTGTTGGACAAATCTAAGAGAAATTTCCATAGAGTCCAATTTTCTTCATATG
AATTTCACTTCCCATTAGAAAGAGTCAAGGAAATGTCCAACAACTATGAGAACCCCTGGA
AAATCCTGTAAATAGCATGTACGTGAATGTAATATAATGAGTGAGTGTTGCCTTTCACTG
GGTTAGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATGCAATGTGAATGTGT
GTATGATGACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAACTGGTG
CAACTACATCCTTGTTCATTTGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CGTGTGAATGTAATGAAGCACTTCAAATCTATGATCAGGTTCATCTACTACATTGAGTAT
TT

consensusID : consensus_5754#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CCGCGTAGCTGTGGGACACTTTATTGACTATTTCTTATTCGAAATGAACTTTATCTCACATGAATTGGACGCTATAGCACCCTTGTTGGACAAATCTAATAGGAATTTCGATAGAGTCCAATTTCCGTCATATTAATTTCACTTCCCATTAGAAAGCGTCAAGGAAGTGTCCAACAACTATGAGAACCCTTGGAAAATCCTGTAAATAGCATGTACGTGAATGTAAAGTAATGAGTGAGTGTTGCCTTTCACTGGGTTGGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATGCAATGTGAATGTGTGTATGATTTGATGACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAACTGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAAATTGAGAGAGAGCGTGTGAATGTAATGAAACACTTCAAATCTATGATCAGGTTCATCTACTACATTGAGTATTTAAATCTATTAAACTATTTTGATCTACATTAAAATTACTTGGAAATAGTTCGTCCAAGTATTGCCATTTTTTGTCAATTTTTTGCGATATTCGTTCACATTTTTCCTGTAT]

[+] EMBL BM603333             [CCGCGTAGCTGTGGGACACTTTATTGACTATTTCTTATTCGAAATGAACTTTATCTCACATGAATTGGACGCTATAGCACCCTTGTTGGACAAATCTAATAGGAATTTCGATAGAGTCCAATTTCCGTCATATTAATTTCACTTCCCATTAGAAAGCGTCAAGGAAGTGTCCAACAACTATGAGAACCCTTGGAAAATCCTGTAAATAGCATGTACGTGAATGTAAAGTAATGAGTGAGTGTTGCCTTTCACTGGGTTGGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATGCAATGTGAATGTGTGTATGATTTGATGACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAACTGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAAATTGAGAGAGAGCGTGTGAATGTAATGAAACACTTCAAATCTATGATCAGGTTCATCTACTACATTGAGTATTTAAATCTATTAAACTATTTTGATCTACATTAAAATTACTTGGAAATAGTTCGTCCAAGTATTGCCATTTTTTGTCAATTTTTTGCGATATTCGTTCACATTTTTCCTGTAT]




>consensus_5754#1
CCGCGTAGCTGTGGGACACTTTATTGACTATTTCTTATTCGAAATGAACTTTATCTCACA
TGAATTGGACGCTATAGCACCCTTGTTGGACAAATCTAATAGGAATTTCGATAGAGTCCA
ATTTCCGTCATATTAATTTCACTTCCCATTAGAAAGCGTCAAGGAAGTGTCCAACAACTA
TGAGAACCCTTGGAAAATCCTGTAAATAGCATGTACGTGAATGTAAAGTAATGAGTGAGT
GTTGCCTTTCACTGGGTTGGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATG
CAATGTGAATGTGTGTATGATTTGATGACCGATTTACGTATGATCGAGTAATAATCGAAC
CAGCAGCCAGCAACTGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAAATTGA
GAGAGAGCGTGTGAATGTAATGAAACACTTCAAATCTATGATCAGGTTCATCTACTACAT
TGAGTATTTAAATCTATTAAACTATTTTGATCTACATTAAAATTACTTGGAAATAGTTCG
TCCAAGTATTGCCATTTTTTGTCAATTTTTTGCGATATTCGTTCACATTTTTCCTGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5754#0      CCGCGCGAAACAGGAGGTAGACTATAAGGGCACGATATCATCATACAGAACAGGGGACAG 60
consensus_5754#1      ------------------------------------------------------------
                                                                                  

consensus_5754#0      AACAGTGACTCTGAGACAATGAGAGAACCACATTTATATGAAATATACTAGGAAAGCAAA 120
consensus_5754#1      ------------------------------------------------------------
                                                                                  

consensus_5754#0      TATTGGGGAAAACGAAACAACAAAATCATTAAAAAGAACAATTTACCTAGCCTCTCTCTG 180
consensus_5754#1      ------------------------------------------------------------
                                                                                  

consensus_5754#0      GGAGGGCCTTTACACAACATAAACACCTGGCGTAACGCGACAATGAAGGAGCTGATGATG 240
consensus_5754#1      ------------------------------------------------------------
                                                                                  

consensus_5754#0      GAGGAGAGGACTGTAGGGAAGATGATGGAAGAAATATTAAACCAAAAAAAAAACAAACAA 300
consensus_5754#1      ------------------------------------------------------------
                                                                                  

consensus_5754#0      GTAAATTTTTCATTCTTGCTAATATTGTTGTATCGAACCCCATGTGTGTGCATTCGAGAA 360
consensus_5754#1      ------------------------------------------------------------
                                                                                  

consensus_5754#0      TTTAGGAGGAGCACTGTGTGCACGAGATACAAGGTTTTCCGGGAGTTTTCGTAGCTGTGG 420
consensus_5754#1      ----------------------------------------------CCGCGTAGCTGTGG 14
                                                                       ***********

consensus_5754#0      GACACTTTATTGACTATTTCTTATTTGAAATGAACTTAATCTAACATGAATTGGACGCTA 480
consensus_5754#1      GACACTTTATTGACTATTTCTTATTCGAAATGAACTTTATCTCACATGAATTGGACGCTA 74
                      ************************* *********** **** *****************

consensus_5754#0      TAGCACCCTTGTTGGACAAATCTAAGAGAAATTTCCATAGAGTCCAATTTTCTTCATATG 540
consensus_5754#1      TAGCACCCTTGTTGGACAAATCTAATAGGAATTTCGATAGAGTCCAATTTCCGTCATATT 134
                      ************************* ** ****** ************** * ****** 

consensus_5754#0      AATTTCACTTCCCATTAGAAAGAGTCAAGGAAATGTCCAACAACTATGAGAACCCCTGGA 600
consensus_5754#1      AATTTCACTTCCCATTAGAAAGCGTCAAGGAAGTGTCCAACAACTATGAGAACCCTTGGA 194
                      ********************** ********* ********************** ****

consensus_5754#0      AAATCCTGTAAATAGCATGTACGTGAATGTAATATAATGAGTGAGTGTTGCCTTTCACTG 660
consensus_5754#1      AAATCCTGTAAATAGCATGTACGTGAATGTAAAGTAATGAGTGAGTGTTGCCTTTCACTG 254
                      ********************************  **************************

consensus_5754#0      GGTTAGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATGCAATGTGAATGTGT 720
consensus_5754#1      GGTTGGAGTTGGTATGAATGTATAGTGATCAATGAAGAGATCAATGCAATGTGAATGTGT 314
                      **** *******************************************************

consensus_5754#0      GTATGAT-----GACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAAC 775
consensus_5754#1      GTATGATTTGATGACCGATTTACGTATGATCGAGTAATAATCGAACCAGCAGCCAGCAAC 374
                      *******     ************************************************

consensus_5754#0      TGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 835
consensus_5754#1      TGGTGCAACTACATCCTTGTTCATTTGAATGAGAGAGAGAAATTGAGAGAGAGCGTGTGA 434
                      **************************************** *  ********* * * **

consensus_5754#0      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA---GAGAGAGAGAGAGAGAGAGAG 892
consensus_5754#1      ATGTAATGAAACACTTCAAATCTATGATCAGGTTCATCTACTACATTGAGTATTTAAATC 494
                        *  *   *       * *   *     **    *      * *  ***      *   

consensus_5754#0      AGAGAGAGCGTGTGAATGTA-ATGAAG--CACTTCAAATCTAT--GATCAGGTTCATCTA 947
consensus_5754#1      TATTAAACTATTTTGATCTACATTAAAATTACTTGGAAATAGTTCGTCCAAGTATTGCCA 554
                          * *   * *  ** ** ** **    ****  **    *  *  ** **    * *

consensus_5754#0      CTACAT-TGAGTATTT----------------------------- 962
consensus_5754#1      TTTTTTGTCAATTTTTTGCGATATTCGTTCACATTTTTCCTGTAT 599
                       *   * * * * ***