These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [CCGCCCACGCGTCCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATGGACAGCGATGTATAAGAGGAAGAGGATGAGGAGGCGGAGAGCGTCCAGGGCGAGGAAGATGATTACGAAGATGAGGATGTTGGCGAGGAGCTGGACGACGAAAAGGAGGACGATGAGATGGGCGCAGAAGAAGATTATGAGG] [+] EMBL BM617336 [CCGCCCACGCGTCCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATGGACAGCGATGTATAAGAGGAAGAGGATGAGGAGGCGGAGAGCGTCCAGGGCGAGGAAGATGATTACGAAGATGAGGATGTTGGCGAGGAGCTGGACGACGAAAAGGAGGACGATGAGATGGGCGCAGAAGAAGATTATGAGG] [+] EMBL BM604368 [ ccggttgCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCTGAGGAAGAGGAGATGGACAGCGATGTAGAAGAGGAAGAGGAT ] consensusID : consensus_5759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATG] [+] EMBL BM610314 [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTTGTGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATG] consensusID : consensus_5759#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [CCGCGGACGCGTGGGGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAG] [+] EMBL BM603530 [CCGCGGACGCGTGGGGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGCCGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGATTCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAGCAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCCGCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAGTACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAGAATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGATGAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTTCTTCAACGGGCGGAATCGGAAGATGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5759#1 ---------------------CCGCG-GACGCGTGGGC-----GGACGCGTGGGCTTTTG 33 consensus_5759#2 ------------------------------------------------------CCGCGG 6 consensus_5759#0 CCGCCCACGCGTCCGATAAATCCACGCGCCGTGTTAGCCTTTCGTTTTCGTTTGCTTTTG 60 * * consensus_5759#1 TGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGC 93 consensus_5759#2 ACGCGTGGGGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGC 66 consensus_5759#0 TGAAGTGTTGTTAGGATGGGCCGTAAAATAAATCTCGAGAGACCGAAAAAGGGACCTGGC 120 *** *************************************************** consensus_5759#1 CGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGAT 153 consensus_5759#2 CGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGAT 126 consensus_5759#0 CGAAAGGCCCGGAAACAGCCAGAACCAGAGTTTCAGTTCAAAAAGGGCGAGGATGAGGAT 180 ************************************************************ consensus_5759#1 TCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAG 213 consensus_5759#2 TCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAG 186 consensus_5759#0 TCCAACAAGAAGCTGTCCCGCCATCAAATCCAGCGGCTCAAGAAGCGCGAAATGCTAAAG 240 ************************************************************ consensus_5759#1 CAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCC 273 consensus_5759#2 CAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCC 246 consensus_5759#0 CAAAAGCAGAAGGAAGAGAAGAAGACGAAAAAAGCGACAAAGAACGCGGCAAAAGTAGCC 300 ************************************************************ consensus_5759#1 GCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAG 333 consensus_5759#2 GCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAG 306 consensus_5759#0 GCCGTCCCGAACACGTTCGATCCGGCGGAGATTTTCAACATCGAAAAAAGCCGACAGAAG 360 ************************************************************ consensus_5759#1 TACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAG 393 consensus_5759#2 TACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAG 366 consensus_5759#0 TACCAGCAACTGGGCCAAAAGAGCAAAACACCACAGCCCGTCGCAACCAATGGCCATCAG 420 ************************************************************ consensus_5759#1 AATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGAT 453 consensus_5759#2 AATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGAT 426 consensus_5759#0 AATGGCAGCGCGAAGAAGGGTCGCAACTTGTTCGATAGCGATAATGAAATGGATGAGGAT 480 ************************************************************ consensus_5759#1 GAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTT 513 consensus_5759#2 GAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTT 486 consensus_5759#0 GAGCAAAAGGCAGCCACCGGCAAGAAGGTACAGGTGAAGAAAAGCCAAATGAAGAAGTTT 540 ************************************************************ consensus_5759#1 CTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATG--------- 564 consensus_5759#2 CTTCAACGGGCGGAATCGGAAGATGAG--------------------------------- 513 consensus_5759#0 CTTCAACGGGCGGAATCGGAAGATGAGAGCGATTCGGAGGAAGAGGAGATGGACAGCGAT 600 *************************** consensus_5759#1 ------------------------------------------------------------ consensus_5759#2 ------------------------------------------------------------ consensus_5759#0 GTATAAGAGGAAGAGGATGAGGAGGCGGAGAGCGTCCAGGGCGAGGAAGATGATTACGAA 660 consensus_5759#1 ------------------------------------------------------------ consensus_5759#2 ------------------------------------------------------------ consensus_5759#0 GATGAGGATGTTGGCGAGGAGCTGGACGACGAAAAGGAGGACGATGAGATGGGCGCAGAA 720 consensus_5759#1 ------------- consensus_5759#2 ------------- consensus_5759#0 GAAGATTATGAGG 733 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||