cluster # 576

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Anopheles gambiae
cluster # 576 cluster # 576 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_576#0 length = 393 sequences # 1

consensus_576#1 length = 230 sequences # 1

consensusID : consensus_576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [CACACACACCTTTACATGGAAACACTCTGCTATAGCGATTATTATTATTAATATTATTATTATCATGACTATCCGTGTGTAAGGAGCGCTCTCCCGTCAATGGGGTGGGTGGGTGGTGGGGAGGCAAAGCTCCTGTCATCATTATTATCAGTATATGATAGTGGTGATCAATGATGATGACGACGATGCTGGTTATTATTATTATATTATAATTATTACAAACCAACTACTTGCAACACACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTGCATCGAGGAAAGGAGTAGGAAAAAAATGCTAGTGGAAAGATAATGTGGGGGGAATTGGGGTTTTTT]

[+] EMBL BX615106             [CACACACACCTTTACATGGAAACACTCTGCTATAGCGATTATTATTATTAATATTATTATTATCATGACTATCCGTGTGTAAGGAGCGCTCTCCCGTCAATGGGGTGGGTGGGTGGTGGGGAGGCAAAGCTCCTGTCATCATTATTATCAGTATATGATAGTGGTGATCAATGATGATGACGACGATGCTGGTTATTATTATTATATTATAATTATTACAAACCAACTACTTGCAACACACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTGCATCGAGGAAAGGAGTAGGAAAAAAATGCTAGTGGAAAGATAATGTGGGGGGAATTGGGGTTTTTT]




>consensus_576#0
CACACACACCTTTACATGGAAACACTCTGCTATAGCGATTATTATTATTAATATTATTAT
TATCATGACTATCCGTGTGTAAGGAGCGCTCTCCCGTCAATGGGGTGGGTGGGTGGTGGG
GAGGCAAAGCTCCTGTCATCATTATTATCAGTATATGATAGTGGTGATCAATGATGATGA
CGACGATGCTGGTTATTATTATTATATTATAATTATTACAAACCAACTACTTGCAACACA
CAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAG
ACAGAGAGTGAAGTGAGTGTGTGTGTGCATCGAGGAAAGGAGTAGGAAAAAAATGCTAGT
GGAAAGATAATGTGGGGGGAATTGGGGTTTTTT

consensusID : consensus_576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [AAAATGTTTCTTAAACTACAAGCGAATGTGAAATGGCGGGAGACAAGAAAACACAAAACCACATCACACATTATACACAGCAACACACACATACACAGCACAAGATAGTAAATGTTTATACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTTGCATTTAGGAAACAAAATTTTCT]

[+] EMBL BX614292             [AAAATGTTTCTTAAACTACAAGCGAATGTGAAATGGCGGGAGACAAGAAAACACAAAACCACATCACACATTATACACAGCAACACACACATACACAGCACAAGATAGTAAATGTTTATACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTTGCATTTAGGAAACAAAATTTTCT]




>consensus_576#1
AAAATGTTTCTTAAACTACAAGCGAATGTGAAATGGCGGGAGACAAGAAAACACAAAACC
ACATCACACATTATACACAGCAACACACACATACACAGCACAAGATAGTAAATGTTTATA
CAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAG
ACAGAGAGTGAAGTGAGTGTGTGTGTTGCATTTAGGAAACAAAATTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_576#0      CACACACACCTTTACATGGAAACACTCTGCTATAGCGATTATTATTATTAATATTATTAT 60
consensus_576#1      ------------------------------------------------------------
                                                                                 

consensus_576#0      TATCATGACTATCCGTGTGTAAGGAGCGCTCTCCCGTCAATGGGGTGGGTGGGTGGTGGG 120
consensus_576#1      ------------------------------------------------------------
                                                                                 

consensus_576#0      GAGGCAAAGCTCCTGTCATCATTATTATCAGTATATGATAGTGGTGATCAATGATGATGA 180
consensus_576#1      ---AAAATGTTTCTTAAACTACAAGCG--AATGTGAAATGGCGGGAGACAAGAAAACACA 55
                          ** * * **   *  *  *     * * *   ** * **    ***  *     *

consensus_576#0      CGACGATGCTGGTTATTAT-TATTATATTATAATTATTACAAACCAACTACTTGCAA--- 236
consensus_576#1      AAACCACATCACACATTATACACAGCAACACACACAT-ACACAGCACAAGATAGTAAATG 114
                       ** *        *****  *    *  * *   ** *** * **     * * **   

consensus_576#0      --CACACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGAT 294
consensus_576#1      TTTATACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGAT 174
                        * *******************************************************

consensus_576#0      AGAGAGACAGAGAGTGAAGTGAGTGTGTGTGT-GCATCGAGGAAAGGAGTAGGAAAAAAA 353
consensus_576#1      AGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTTGCATTTAGGAAAC--------AAAATT 226
                     ******************************** ****  ******         ****  

consensus_576#0      TGCTAGTGGAAAGATAATGTGGGGGGAATTGGGGTTTTTT 393
consensus_576#1      TTCT------------------------------------ 230
                     * **