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Anopheles gambiae
cluster # 5766 cluster # 5766       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5766#0 length = 1222 sequences # 3  
consensus_5766#1 length = 704 sequences # 1  

consensusID : consensus_5766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1222
fasta sequence
                              [GTTTACTTGGGGTCTCCGTATGGACCTATAGCAAACATAATGCTGTACCATAAATATTACATCGAAAAAGATGGAAACGAATCCCAGACCAAACTTGACCGGACTTCCAACAATTGATTGCCAGTCATCATAATTCCAACCGTTGAGTACCATCTGTAGCAGGCTCAACAATCCACCCGCAAGGTCCAGCAATCGGTTGGAGATAGCGACCTTCCGTGCTCTTTCGCCGGTAGTTCATAAGTACTTGTGGGATGTATTTGATCAAGTTTGTTGACAGCTTGACGTAGCTTAGTATGTACAGGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCAGTACATATCCGCGAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGGTAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCCACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCAATAAACGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCAAGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGTGTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTCACAGCCATGGAAGAGCAACCTTAAAATCTGCCGTTTGCGTTACGCTAGTTGTAAGCGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTAACTGCATTCACGCATTTATTGCTTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCTACAAAGAAATTGAGCAACCTCCACGAAGTACAGCACTTCAAGTCACCATTTAACTTTGAGCGGACGCGTGGGCGGACGCGTGGGCGG]

[+] EMBL CNS09QBQ             [GTTTACTTGGGGTCTCCGTATGGACCTATAGCAAACATAATGCTGTACCATAAATATTACATCGAAAAAGATGGAAACGAATCCCAGACCAAACTTGACCGGACTTCCAACAATTGATTGCCAGTCATCATAATTCCAACCGTTGAGTACCATCTGTAGCAGGCTCAACAATCCACCCGCAAGGTCCAGCAATCGGTTGGAGATAGCGACCTTCCGTGCTCTTTCGCCGGTAGTTCATAAGTACTTGTGGGATGTATTTGATCAAGTTTGTTGACAGCTTGACGTAGCTTAGTATGTACAGGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCAGTACATATCCGCGAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGGTAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCCACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCAATAAACGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCAAGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGTGTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTC                                                                                                                                                                                                                                                                       ]
[-] EMBL CNS09QBP             [                                                                                                                                                                                                                                                                               TGACAGCTTGACGTAGCTTAGTATGTACAGGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCAGTACATATCCG GAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGGTAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCCACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCAATAAACGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCAAGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGTGTTCG TTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTCACAGCCATGGAAGAGCAACCTTAAAATCTGCCGTTTGCGTTACGCTAGTTGTAAGCGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTAACTGCATTCACGCATTTATTGCTTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCTACAAAGAAATTGAGCAACCTCCACGAAGTACAGCACTTCAAGTCACCATTTAA                                  ]
[-] EMBL BM615524             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCCACAGCCGTGGAATAACAA GTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTAAGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACGCATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCCACAAAGGAATTGAGCAACCTCAGTCAAGTACAGCTCTTCAAGTCACCATTTAACTTTGAGCGGACGCGTGGGCGGACGCGTGGGCGG]


>consensus_5766#0 GTTTACTTGGGGTCTCCGTATGGACCTATAGCAAACATAATGCTGTACCATAAATATTAC ATCGAAAAAGATGGAAACGAATCCCAGACCAAACTTGACCGGACTTCCAACAATTGATTG CCAGTCATCATAATTCCAACCGTTGAGTACCATCTGTAGCAGGCTCAACAATCCACCCGC AAGGTCCAGCAATCGGTTGGAGATAGCGACCTTCCGTGCTCTTTCGCCGGTAGTTCATAA GTACTTGTGGGATGTATTTGATCAAGTTTGTTGACAGCTTGACGTAGCTTAGTATGTACA GGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCA GTACATATCCGCGAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGG TAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCC ACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCA ATAAACGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATG TTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCAA GCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGAT ACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATCG ACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGAT GACGAGATGTTGATGGAGAAGTGTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGG CTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTCA CAGCCATGGAAGAGCAACCTTAAAATCTGCCGTTTGCGTTACGCTAGTTGTAAGCGCCTG AGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTAACTGCATTCACGCATTTATT GCTTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCTACAAA GAAATTGAGCAACCTCCACGAAGTACAGCACTTCAAGTCACCATTTAACTTTGAGCGGAC GCGTGGGCGGACGCGTGGGCGG



consensusID : consensus_5766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence
                              [AAATACTCGTCCTCAATAAATCGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTAGTCCAACCTTGAAAGTAATCTCCAATTGTCCAGCAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAACAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCCACAGCCGCTGGGAGATAATTGAGCAAAATATTATTGATACGAGCTAAGACTAATGAAATGGAAAGTAATACTTACTGGAATAACAAGTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTAAGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACGCATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCCACAAAGGAATTGAGCGGACGCGTGGG]

[-] EMBL BM603925             [AAATACTCGTCCTCAATAAATCGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTAGTCCAACCTTGAAAGTAATCTCCAATTGTCCAGCAGACGGTGTACGTCCATCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAACAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCCACAGCCGCTGGGAGATAATTGAGCAAAATATTATTGATACGAGCTAAGACTAATGAAATGGAAAGTAATACTTACTGGAATAACAAGTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTAAGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACGCATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATTGCCACAAAGGAATTGAGCGGACGCGTGGG]


>consensus_5766#1 AAATACTCGTCCTCAATAAATCGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACA GCAATTGCCGACGATGTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCG CCGGTAGCTAGTCCAACCTTGAAAGTAATCTCCAATTGTCCAGCAGACGGTGTACGTCCA TCCGATGAGCATCGATACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAA CAGGCGGGCATCATCGACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAA TCGTCCCTGTTTCGATGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTAT TGTGATAATTGAAGGGCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATT ATGTCCATTTTCGCCACAGCCGCTGGGAGATAATTGAGCAAAATATTATTGATACGAGCT AAGACTAATGAAATGGAAAGTAATACTTACTGGAATAACAAGTTAAAATCTGCCGTTTGT GTTACGCTAGTTGTAAGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTG CTTACTGCATTCACGCATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAAT TTGGTGAAAATCATTGCCACAAAGGAATTGAGCGGACGCGTGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5766#0      GTTTACTTGGGGTCTCCGTATGGACCTATAGCAAACATAATGCTGTACCATAAATATTAC 60
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      ATCGAAAAAGATGGAAACGAATCCCAGACCAAACTTGACCGGACTTCCAACAATTGATTG 120
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      CCAGTCATCATAATTCCAACCGTTGAGTACCATCTGTAGCAGGCTCAACAATCCACCCGC 180
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      AAGGTCCAGCAATCGGTTGGAGATAGCGACCTTCCGTGCTCTTTCGCCGGTAGTTCATAA 240
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      GTACTTGTGGGATGTATTTGATCAAGTTTGTTGACAGCTTGACGTAGCTTAGTATGTACA 300
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      GGAAGTCAAGCCAGTGCATCTGTTCCTCGATCGCAAAGCCACAGAACACGCTCACCATCA 360
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      GTACATATCCGCGAAATGAGCAGTTTGACCGCAGTCGAGACAACGGTGCCACCATTCTGG 420
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      TAGATGTAGCACTGGGCAATGAGGACCAAGTTTCCAAACACGGCGTGCACTGCATATCCC 480
consensus_5766#1      ------------------------------------------------------------
                                                                                  

consensus_5766#0      ACATCATTCGGCACCACCGGATTCAGCCCAAATGGATGGCGTCTGAAATACTCGTCCTCA 540
consensus_5766#1      ---------------------------------------------AAATACTCGTCCTCA 15
                                                                   ***************

consensus_5766#0      ATAAA-CGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGAT 599
consensus_5766#1      ATAAATCGCACTGCAGAACAGCACCACATTAAACGTCGCGTAACAGCAATTGCCGACGAT 75
                      ***** ******************************************************

consensus_5766#0      GTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTGGTCCA 659
consensus_5766#1      GTTCAGGTAAAGGAAATCGAAGCTCAATCCGACGACGCTCTTGCGCCGGTAGCTAGTCCA 135
                      ****************************************************** *****

consensus_5766#0      AGCTTGAAAGTAATCGCCAATTGTCCAACAGACGGTGTACGTCCATCCGATGAGCATCGA 719
consensus_5766#1      ACCTTGAAAGTAATCTCCAATTGTCCAGCAGACGGTGTACGTCCATCCGATGAGCATCGA 195
                      * ************* *********** ********************************

consensus_5766#0      TACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAATAGGCGGGCATCATC 779
consensus_5766#1      TACGATTATCAGCGGGCGATATTGGGCGACTTTGAGCTGTACAAACAGGCGGGCATCATC 255
                      ********************************************* **************

consensus_5766#0      GACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGA 839
consensus_5766#1      GACGACGCTGAGATTGCTGGTGATAATTATGGGACGGATGATAAATCGTCCCTGTTTCGA 315
                      ************************************************************

consensus_5766#0      TGACGAGATGTTGATGGAGAAGTGTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGG 899
consensus_5766#1      TGACGAGATGTTGATGGAGAAGGTTTCGCTTTCGCATCCATTTATTGTGATAATTGAAGG 375
                      **********************  ************************************

consensus_5766#0      GCTTAGTTTGATCTGCTCGTCGGCATCCCAAGTTAGGGTAATATTATGTCCATTTTTGTC 959
consensus_5766#1      GCTTAGTTTGATCTGCTCGTCGGTATCCCAAGTTATGGTAATATTATGTCCATTTTCGCC 435
                      *********************** *********** ******************** * *

consensus_5766#0      ACAGCC---------------------------------------------------ATG 968
consensus_5766#1      ACAGCCGCTGGGAGATAATTGAGCAAAATATTATTGATACGAGCTAAGACTAATGAAATG 495
                      ******                                                   ***

consensus_5766#0      GAA--------------GAGCAACC--TTAAAATCTGCCGTTTGCGTTACGCTAGTTGTA 1012
consensus_5766#1      GAAAGTAATACTTACTGGAATAACAAGTTAAAATCTGCCGTTTGTGTTACGCTAGTTGTA 555
                      ***              **  ***   ***************** ***************

consensus_5766#0      AGCGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTAACTGCATTCACG 1072
consensus_5766#1      AGTGCCTGAGGTTCTATTGTAAATTTCAAACGACTGCTTGAATTGCTTACTGCATTCACG 615
                      ** ******************************************** ************

consensus_5766#0      CATTTATTGCTTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATT 1132
consensus_5766#1      CATTTATTGCCTAAAATAATGCCAAAAATGGCTAACGAACACAATTTGGTGAAAATCATT 675
                      ********** *************************************************

consensus_5766#0      GCTACAAAGAAATTGAGCAACCTCCACGAAGTACAGCACTTCAAGTCACCATTTAACTTT 1192
consensus_5766#1      GCCACAAAGGAATTGAGCGGACGCGTGGG------------------------------- 704
                      ** ****** ********   * *   *                                

consensus_5766#0      GAGCGGACGCGTGGGCGGACGCGTGGGCGG 1222
consensus_5766#1      ------------------------------
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)