cluster # 5769

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Anopheles gambiae
cluster # 5769 cluster # 5769 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5769#0 length = 805 sequences # 3

consensus_5769#1 length = 374 sequences # 1

consensusID : consensus_5769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 805
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGATCACAACAGTTCAGCTTTACGGTTTCTTTTTTTTTTTCAAAAATGGCAAAATGGGCCGTATTTGGCATAATCTTTCTGATAGGCTTATTTAGCGAGGAGCTAAGGATAACGTCAGCCGAAAAGCTACAACTCGTCTATCAATGGTCACAGCTGAAGTCCAG-TAACAGTAGCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTGTCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATCACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGAACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTAACCTATTGGTGAACTCACTGCGGAGGGATTTCACCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCGCGATTGTGGCCGTGCTTACGCGTACATTCCCGACTACGAGTGGCGTCGGCTGTACGTGTACGGACTGACCGAGGGTCGGATGTGGCGGTTTGAGCACAACTACTTCTCCTT]

[+] EMBL BM604022             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGATCACAACAGTTCAGCTTTACGGTTTCTTTTTTTTTTTCAAAAATGGCAAAATGGGCCGTATTTGGCATAATCTTTCTGATAGGCTTATTTAGCGAGGAGCTAAGGATAACGTCAGCCGAAAAGCTACAACTCGTCTATCAATGGTCACAGCTGAAGTCCAG TAACAGTAGCGAAGCATCGCAAAATGTAGTATTCGCGGCCAATTCTGTCCCAGCCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATCACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGAACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTAACCTATTGGTGAACTCACTGCGGAGGGATTTCACCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCGAAATTCCACCGGAAATGGTCGAGTTTGGTTA                                                                                                                                                   ]
[+] EMBL BX619681             [                                                                                                                                                                         TCAATGGTCACAGCTGAAGTCCAGNTAACAGTACCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTGTCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCctggc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX612056             [                                                                                                                                                                                         AAGTCCAG T   AGTAGCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTGTCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATCACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGAACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTAACCTATTGGTGAACTCACTGCGGAGGGATTTCACCGTCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGTCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCGTCGATCTTACCATCAATCGGAGTGTGCGACGGTTCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCGCGATTGTGGCCGTGCTTACGCGTACATTCCCGACTACGAGTGGCGTCGGCTGTACGTGTACGGACTGACCGAGGGTCGGATGTGGCGGTTTGAGCACAACTACTTCTCCTT]




>consensus_5769#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGCGATCACAACAGTTCAGCTTTACGGTTTCTT
TTTTTTTTTCAAAAATGGCAAAATGGGCCGTATTTGGCATAATCTTTCTGATAGGCTTAT
TTAGCGAGGAGCTAAGGATAACGTCAGCCGAAAAGCTACAACTCGTCTATCAATGGTCAC
AGCTGAAGTCCAGTAACAGTAGCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTG
TCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATC
ACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGA
ACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTA
ACCTATTGGTGAACTCACTGCGGAGGGATTTCACCGCCGACCCGAAACGCATCATCTCTG
TCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCG
AGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTA
CCATCAATCGGAGTGTGCGACGGTTCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACG
GCATTCCCAACATCGAGGTGGACGTCGATGATCGCGATTGTGGCCGTGCTTACGCGTACA
TTCCCGACTACGAGTGGCGTCGGCTGTACGTGTACGGACTGACCGAGGGTCGGATGTGGC
GGTTTGAGCACAACTACTTCTCCTT

consensusID : consensus_5769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [GCNCCATTTCTCCATTTATTCAGAGGGATTTCANCCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGTCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCCGCGATTGTGGCCCGTGCCTTTACGCCGTACATTNCCCGAACTACGAAGTGGGCGTTCGGGCCTGTACGTTGTTACCGGGAACTGANCCGACGGGTTCG]

[+] EMBL BX619554             [GCNCCATTTCTCCATTTATTCAGAGGGATTTCANCCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGTCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCCGCGATTGTGGCCCGTGCCTTTACGCCGTACATTNCCCGAACTACGAAGTGGGCGTTCGGGCCTGTACGTTGTTACCGGGAACTGANCCGACGGGTTCG]




>consensus_5769#1
GCNCCATTTCTCCATTTATTCAGAGGGATTTCANCCGCCGACCCGAAACGCATCATCTCT
GTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTC
GAGTATCCGGTCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTT
ACCATCAATCGGAGTGTGCGACGGTTCCGAAATTCCACCGGAAATGGTCGAGTTTGGTTA
CGGCATTCCCAACATCGAGGTGGACGTCGATGATCCGCGATTGTGGCCCGTGCCTTTACG
CCGTACATTNCCCGAACTACGAAGTGGGCGTTCGGGCCTGTACGTTGTTACCGGGAACTG
ANCCGACGGGTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5769#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGCGATCACAACAGTTCAGCTTTACGGTTTCTT 60
consensus_5769#1      ------------------------------------------------------------
                                                                                  

consensus_5769#0      TTTTTTTTTCAAAAATGGCAAAATGGGCCGTATTTGGCATAATCTTTCTGATAGGCTTAT 120
consensus_5769#1      ------------------------------------------------------------
                                                                                  

consensus_5769#0      TTAGCGAGGAGCTAAGGATAACGTCAGCCGAAAAGCTACAACTCGTCTATCAATGGTCAC 180
consensus_5769#1      ------------------------------------------------------------
                                                                                  

consensus_5769#0      AGCTGAAGTCCAGTAACAGTAGCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTG 240
consensus_5769#1      ------------------------------------------------------------
                                                                                  

consensus_5769#0      TCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATC 300
consensus_5769#1      ------------------------------------------------------------
                                                                                  

consensus_5769#0      ACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGA 360
consensus_5769#1      ------------------------------------------------------------
                                                                                  

consensus_5769#0      ACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTA 420
consensus_5769#1      -----------------------------------------------------------G 1
                                                                                  

consensus_5769#0      ACCTATTGGTGAACTCACTGCGGAGGGATTTCACC-GCCGACCCGAAACGCATCATCTCT 479
consensus_5769#1      CNCCATTTCTCCATTTATT-CAGAGGGATTTCANCCGCCGACCCGAAACGCATCATCTCT 60
                        * ***  *  * * * * * *********** * ************************

consensus_5769#0      GTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTC 539
consensus_5769#1      GTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTC 120
                      ************************************************************

consensus_5769#0      GAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTT 599
consensus_5769#1      GAGTATCCGGTCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTT 180
                      ********** *************************************************

consensus_5769#0      ACCATCAATCGGAGTGTGCGACGGTTC-GAAATTCCACCGGAAATGGTCGAGTTTGGTTA 658
consensus_5769#1      ACCATCAATCGGAGTGTGCGACGGTTCCGAAATTCCACCGGAAATGGTCGAGTTTGGTTA 240
                      *************************** ********************************

consensus_5769#0      CGGCATTCCCAACATCGAGGTGGACGTCGATGATC-GCGATTGTGGCC-GTGC--TTACG 714
consensus_5769#1      CGGCATTCCCAACATCGAGGTGGACGTCGATGATCCGCGATTGTGGCCCGTGCCTTTACG 300
                      *********************************** ************ ****  *****

consensus_5769#0      C-GTACATTCCC--GACTACGAGTGGCGTCGGCTGTACGTGTACGGACTGACCGAGGGTC 771
consensus_5769#1      CCGTACATTNCCCGAACTACGAA-GTGGGCGTTCGGGCCTGTACGTTGTTACCGGGAACT 359
                      * ******* **   *******  *  * **   *  * ******   * **** *    

consensus_5769#0      GGATGTGGCGGTTTGAGCACAACTACTTCTCCTT 805
consensus_5769#1      GANCCGACGGGTTCG------------------- 374
                      *        **** *