These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 805 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGATCACAACAGTTCAGCTTTACGGTTTCTTTTTTTTTTTCAAAAATGGCAAAATGGGCCGTATTTGGCATAATCTTTCTGATAGGCTTATTTAGCGAGGAGCTAAGGATAACGTCAGCCGAAAAGCTACAACTCGTCTATCAATGGTCACAGCTGAAGTCCAG-TAACAGTAGCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTGTCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATCACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGAACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTAACCTATTGGTGAACTCACTGCGGAGGGATTTCACCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCGCGATTGTGGCCGTGCTTACGCGTACATTCCCGACTACGAGTGGCGTCGGCTGTACGTGTACGGACTGACCGAGGGTCGGATGTGGCGGTTTGAGCACAACTACTTCTCCTT] [+] EMBL BM604022 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGATCACAACAGTTCAGCTTTACGGTTTCTTTTTTTTTTTCAAAAATGGCAAAATGGGCCGTATTTGGCATAATCTTTCTGATAGGCTTATTTAGCGAGGAGCTAAGGATAACGTCAGCCGAAAAGCTACAACTCGTCTATCAATGGTCACAGCTGAAGTCCAG TAACAGTAGCGAAGCATCGCAAAATGTAGTATTCGCGGCCAATTCTGTCCCAGCCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATCACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGAACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTAACCTATTGGTGAACTCACTGCGGAGGGATTTCACCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCGAAATTCCACCGGAAATGGTCGAGTTTGGTTA ] [+] EMBL BX619681 [ TCAATGGTCACAGCTGAAGTCCAGNTAACAGTACCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTGTCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCctggc ] [+] EMBL BX612056 [ AAGTCCAG T AGTAGCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTGTCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATCACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGAACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTAACCTATTGGTGAACTCACTGCGGAGGGATTTCACCGTCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGTCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCGTCGATCTTACCATCAATCGGAGTGTGCGACGGTTCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCGCGATTGTGGCCGTGCTTACGCGTACATTCCCGACTACGAGTGGCGTCGGCTGTACGTGTACGGACTGACCGAGGGTCGGATGTGGCGGTTTGAGCACAACTACTTCTCCTT] consensusID : consensus_5769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [GCNCCATTTCTCCATTTATTCAGAGGGATTTCANCCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGTCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCCGCGATTGTGGCCCGTGCCTTTACGCCGTACATTNCCCGAACTACGAAGTGGGCGTTCGGGCCTGTACGTTGTTACCGGGAACTGANCCGACGGGTTCG] [+] EMBL BX619554 [GCNCCATTTCTCCATTTATTCAGAGGGATTTCANCCGCCGACCCGAAACGCATCATCTCTGTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTCGAGTATCCGGTCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTTACCATCAATCGGAGTGTGCGACGGTTCCGAAATTCCACCGGAAATGGTCGAGTTTGGTTACGGCATTCCCAACATCGAGGTGGACGTCGATGATCCGCGATTGTGGCCCGTGCCTTTACGCCGTACATTNCCCGAACTACGAAGTGGGCGTTCGGGCCTGTACGTTGTTACCGGGAACTGANCCGACGGGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5769#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCGATCACAACAGTTCAGCTTTACGGTTTCTT 60 consensus_5769#1 ------------------------------------------------------------ consensus_5769#0 TTTTTTTTTCAAAAATGGCAAAATGGGCCGTATTTGGCATAATCTTTCTGATAGGCTTAT 120 consensus_5769#1 ------------------------------------------------------------ consensus_5769#0 TTAGCGAGGAGCTAAGGATAACGTCAGCCGAAAAGCTACAACTCGTCTATCAATGGTCAC 180 consensus_5769#1 ------------------------------------------------------------ consensus_5769#0 AGCTGAAGTCCAGTAACAGTAGCGAAGCATCGCAAAATGTAGTATTCACGGCCAATTCTG 240 consensus_5769#1 ------------------------------------------------------------ consensus_5769#0 TCCCAGTCGATGAGGACACGTTCAACGCGTATGGCAATCTGCCGATGGGTGTCACCCATC 300 consensus_5769#1 ------------------------------------------------------------ consensus_5769#0 ACAAGGGATTCCTGTACGTTACGATTCCACGGCGCCGTCCGGGCATTCCGGCCACCTTGA 360 consensus_5769#1 ------------------------------------------------------------ consensus_5769#0 ACGTCATCGACCTGGCACGCAATCCATCGGCAAACAATCCGACGCTGGATCCGTACCCTA 420 consensus_5769#1 -----------------------------------------------------------G 1 consensus_5769#0 ACCTATTGGTGAACTCACTGCGGAGGGATTTCACC-GCCGACCCGAAACGCATCATCTCT 479 consensus_5769#1 CNCCATTTCTCCATTTATT-CAGAGGGATTTCANCCGCCGACCCGAAACGCATCATCTCT 60 * *** * * * * * * *********** * ************************ consensus_5769#0 GTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTC 539 consensus_5769#1 GTCTACCGCACGCAGGTGGATCGTTGCGATCGGCTCTGGTTCGTTGATACGGGATATCTC 120 ************************************************************ consensus_5769#0 GAGTATCCGGGCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTT 599 consensus_5769#1 GAGTATCCGGTCGGTGCTGGCCGCCAGGTGCAGCGTCCCGCCCTGTGGGTCATCGATCTT 180 ********** ************************************************* consensus_5769#0 ACCATCAATCGGAGTGTGCGACGGTTC-GAAATTCCACCGGAAATGGTCGAGTTTGGTTA 658 consensus_5769#1 ACCATCAATCGGAGTGTGCGACGGTTCCGAAATTCCACCGGAAATGGTCGAGTTTGGTTA 240 *************************** ******************************** consensus_5769#0 CGGCATTCCCAACATCGAGGTGGACGTCGATGATC-GCGATTGTGGCC-GTGC--TTACG 714 consensus_5769#1 CGGCATTCCCAACATCGAGGTGGACGTCGATGATCCGCGATTGTGGCCCGTGCCTTTACG 300 *********************************** ************ **** ***** consensus_5769#0 C-GTACATTCCC--GACTACGAGTGGCGTCGGCTGTACGTGTACGGACTGACCGAGGGTC 771 consensus_5769#1 CCGTACATTNCCCGAACTACGAA-GTGGGCGTTCGGGCCTGTACGTTGTTACCGGGAACT 359 * ******* ** ******* * * ** * * ****** * **** * consensus_5769#0 GGATGTGGCGGTTTGAGCACAACTACTTCTCCTT 805 consensus_5769#1 GANCCGACGGGTTCG------------------- 374 * **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||