These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1194 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCAGTGGTGATAGTATTACATAAACTGGTGCTCTAGACTGGAGCAGCAGTTAATAACCTCAGTCAACATTACGGAGACACACTTAGGCACCATAGTATTAGACTACACTATACCGTATTGAAATAGTTAGACATTGAAGTTGGAGGCGACAACTTCGAACTTCGCGCATAGGAAAATTCTAGATTAAATCCTCCTCAGCGGGTGAGGACCGCGTGACAATACTGTAGTGAACAATTGTTGTAAAATTCGTAAGCAAGTCATTCGGGACATTCGGCAGATTCTGGAAAACCCAACAAAGAGAAGCGTTTCGTGCTACAGAAAGAGTTCCAATTTCCTGCGCCATACAAAATGCGTGACTAGACACATACACACACACACACAAAGAGAGTGTGAGGAACGGAAGACACATCGTCGTTCTCATTTCCGGGAAGTACGAGTACGAGCTAGCAGCAACAGTAACAACAGTATTACAGTGGAGGCTTGTCCAGCACAACTGTCGTGAACGCGAACGGCGGCAACTGTGCGTGT--GTGTGTTGGGAAAGCAGCTCGGGAAGTAGCAGGTGTATCTGCTCTGGTGCCATCTTGTCGTGTGTCCACAGCACACCGCCGGAAAACTACTGCCGACCGAAGAAACGAACCACGGCAACCAGCAAACACCGTTAGCAGTCCAATGAAACCAAGTTTCAAGAACGGAAAGTTCGCCACATCCATCTACGAAAAATGTCTCTGCCAAAAGAATGGAATCTCCAGACATCGCAGGAGTGTCTTAATCAGTACCTGCGCCCACAAAGCCTCTTTTCGGAGGATATCGAAATACAGCCCCACGCGGACGATAACCGGCTCCGGTTCGACGGCGTGTACCATCCCTCCATCCCGGAGCAGCGATGCCGGGCGCCTCTCAATGCTGCCCTGCTGGCCGAGTTCGAGAACAGTGGTTCCATGTTCTCGATCCAGTCCGCACCGGTCGTTACCGCTGCTGCAGTCTCGACCACGGCCGCACCGACGACGACGACCGTCACCGAAGGTCCGAGCCTGCTGCTCGATGACTTTGGCATCCCAACGCAACCGGTTGCAGGAACGACGACGACGACCAACGGCGCCGGCGATGAACGCAGCGACACACTGCTCCCGGCCTTCCTCACTGGCCCTCGATACGCACTACAACCTG] [+] EMBL BM604613 [CCGCGGACGCGTGGGCGGACGCGTGGGCAGTGGTGATAGTATTACATAAACTGGTGCTCTAGACTGGAGCAGCAGTTAATAACCTCAGTCAACATTACGGAGACACACTTAGGCACCATAGTATTAGACTACACTATACCGTATTGAAATAGTTAGACATTGAAGTTGGAGGCGACAACTTCGAACTTCGCGCATAGGAAAATTCTAGATTAAATCCTCCTCAGCGGGTGAGGACCGCGTGACAATACTGTAGTGAACAATTGTTGTAAAATTCGTAAGCAAGTCATTCGGGACATTCGGCAGATTCTGGAAAACCCAACAAAGAGAAGCGTTTCGTGCTACAGAAAGAGTTCCAATTTCCTGCGCCATACAAAATGCGTGACTAGACACATACACACACACACACAAAGAGAGTGTGAGGAACGGAAGACACATCGTCGTTCTCATTTCCGGGAAGTACGAGTACGAGCTAGCAGCAACAGTAACAACAGTATTACAGTGGAGGCTTGTCCAGCACAACTGTCGTGAACGCGAACGGCGGCAACTGTGCGTGT GTGTGTTGGGAAAGCAGCTCGGGAAGTAGCAGGTGTATCTGCTCTGGTGCCATCTTGTCGTGTGTCCACAGCACACCGCCGGAAAACTACTGCCGACCGAAGAAACGAACCACGGCAACCAGCAAACACCGTT ] [+] EMBL BM621455 [ ccGCTTGTCCAGCACAACTGTCCTGAACGCGAACGGCGGTAACTGTGCGTGTGAGTGTGTTGGGAAAGCTGCTCGGGAAGTAGCAGGTGTATCTGCTCTGGTGCCATCTTGTCGTGTGTCCACAGCACACCGCCGGAAAACTACTGCCGACCGAAGAAACGAACCACGG AACCAGCAAACACCGTTAGCAGTCCAATGAAACCAAGTTTCAAGAACGGAAAGTTCGCCACATCCATCTACGAAAAATGTCTCTGCCAAAAGAATGGAATCTCCAGACATCGCAGGAGTGTCTTAATCAGTACCTGCGCCCACAAAGCCTCTTTTCGGAGGATATCGAAATACAGCCCCACGCGGACGATAACCGGCTCCGGTTCGACGGCGTGTACCATCCCTCCATCCCGGAGCAGCGATGCCGGGCGCCTCTCAATGCTGCCCTGCTGGCCGAGTTCGAGAACAGTGGTTCCATGTTCTCGATCCAGTCCGCACCGGTCGTTACCGCTGCTGCAGTCTCGACCACGGCCGCACCGACGACGACGACCGTCACCGAAGGTCCGAGCCTGCTGCTCGATGACTTTGGCATCCCAACGCAACCGGTTGCAGGAACGACGACGACGACCAACGGCGCCGGCGATGAACGCAGCGACACACTGCTCCCGGCCTTCCTCACTGGCCCTCGATACGCACTACAACCTG] consensusID : consensus_5771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 929 fasta sequence [CCGACTTGCACGGGGTGGTCCACTGTCCACGGGCAGTCATTTTCTTTTCGACCACTGCGCTCAGTGCACCGCCGGAGTTGTGTTTTGTGCAAGTACCTAATTCCAATAGAATCAGGCTCTGCTGTCCTGACCAGCCTTCCTTGCCTCCCCTCTCCTGCAGAATTCTGGTAACGATCCAAGTGTGTGTTCTCGCGCCCACGTGTGTGTGTGCAGGTGAAAAAAGAAGCAACTAAAACCACCGAATTTTCCACGCTTCCAGTTGTGAAAAGAGAGAAAAGAATTTGGCTTTTAACCAACGACCACCCGCGCGCAGTGTGTGATATAGTTAGATAATTTGTACGGGACTGGCAGGAACTAGCCCCGGACAGAAAAAAAAGTTAGGCTCAAAAGGTTCGACACCGTGTCGGATTACGTATACTCTGGACGTTTTTTGTTTTTTGTTTTAATTTGGTTTGGGTCTTCGTGTGAAGGCTTTTATCTGTCCGGTTCTCGCCTACTACAGATCCTTACGAAGGTGTTGTAATTTTTGCGTTGTGTTACGTGTGCAAGAGGTACACCAGAAACGGATTGCCAAATCGAAGCAAGCACAGAAAGTAAGAGGTTACAGCAGAAAGAGAGAGGTATAGCTTTACCACCACACCACCAAAGTAGATTTGTCTGAAAGACAAGTTCAGTGGTGATAGTATTACATAAACTGGTGCTCTAGACTGGAGCAGCAGTTAATAACCTCAGTCAACATTACGGAGACACACTTAGGCACCATAGTATTAGACTACACTATACCGTATTGAAATAGTTAGACATTGAAGTTGGAGGCGACCACTTCGAACTTCGCGCATAGGAAAATTCTAGATTAAATCCTCCTCAGCGGGTGGAGGACCGCGTGACAATACTGTAGTGGACGAATTGGTGTAAAATTCGTAAGCAAG] [+] EMBL BM651319 [CCGACTTGCACGGGGTGGTCCACTGTCCACGGGCAGTCATTTTCTTTTCGACCACTGCGCTCAGTGCACCGCCGGAGTTGTGTTTTGTGCAAGTACCTAATTCCAATAGAATCAGGCTCTGCTGTCCTGACCAGCCTTCCTTGCCTCCCCTCTCCTGCAGAATTCTGGTAACGATCCAAGTGTGTGTTCTCGCGCCCACGTGTGTGTGTGCAGGTGAAAAAAGAAGCAACTAAAACCACCGAATTTTCCACGCTTCCAGTTGTGAAAAGAGAGAAAAGAATTTGGCTTTTAACCAACGACCACCCGCGCGCAGTGTGTGATATAGTTAGATAATTTGTACGGGACTGGCAGGAACTAGCCCCGGACAGAAAAAAAAGTTAGGCTCAAAAGGTTCGACACCGTGTCGGATTACGTATACTCTGGACGTTTTTTGTTTTTTGTTTTAATTTGGTTTGGGTCTTCGTGTGAAGGCTTTTATCTGTCCGGTTCTCGCCTACTACAGATCCTTACGAAGGTGTTGTAATTTTTGCGTTGTGTTACGTGTGCAAGAGGTACACCAGAAACGGATTGCCAAATCGAAGCAAGCACAGAAAGTAAGAGG ] [+] EMBL BM652015 [ ccgAAGAATTTGGCTTTTAACCAACGACCACCCGCGCGCAGTGTGTGATATAGTTAGATAATTTGTACGGGACTGGCAGGAACTAGCCCCGGACAG AAAAAAAGTTAGGCTCAAAAGGTTCGACACCGTGTCGGATTACGTATACTCTGGACGTTTTTTGTTTTTTGTTTTAATTTGGTTTGGGTCTTCGTGTGAAGGCTTTTATCTGTCCGGTTCTCGCCTACTACAGATCCTTACGAAGGTGTTGTAATTTTTGCGTTGTGTTACGTGTGCAAGAGGTACACCAGAAACGGATTGCCAAATCGAAGCAAGCACAGAAAGTAAGAGGTTACAGCAGAAAGAGAGAGGTATAGCTTTACCACCACACCACCAAAGTAGATTTGTCTGAAAGACAAGTTCAGTGGTGATAGTATTACATAAACTGGTGCTCTAGACTGGAGCAGCAGTTAATAACCTCAGTCAACATTACGGAGACACACTTAGGCACCATAGTATTAGACTACACTATACCGTATTGAAATAGTTAGACATTGAAGTTGGAGGCGACCACTTCGAACTTCGCGCATAGGAAAATTCTAGATTAAATCCTCCTCAGCGGGTGGAGGACCGCGTGACAATACTGTAGTGGACGAATTGGTGTAAAATTCGTAAGCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5771#0 CCGCGGACGCGTGGGCGGACGCGTGGGCAGTGGTGATAGTATTACATAAACTGGTGCTCT 60 consensus_5771#1 ------------------------------------CCGACTTGCACGGGGTGGTCCACT 24 * ** ** **** * ** consensus_5771#0 AGACTGGAGCAGCAGTTAATAACCTCAGTCAACATTACGGAGACACACTTAGGCACCATA 120 consensus_5771#1 GTCCACGGGCAGTCATTT----TCTTTTCGACCACTGCG----CTCAGTGCACCGCCGGA 76 * * **** ** ** * ** * ** * ** * * ** * consensus_5771#0 GTATTAGACTACACTA-TACCGTATTGAAATAG--TTAGACATTGAAGTTGGAGGCGACA 177 consensus_5771#1 GTTGTGTTTTGTGCAAGTACCTAATTCCAATAGAATCAGGCTCTGCTGTCCTGACCAGCC 136 ** * * * * **** *** ***** * ** * ** ** * * consensus_5771#0 ACTTCGAACTTCGCGCATAGG-AAAATTCTAGATTAAATCCTCCTCAGCGGGTGAGGACC 236 consensus_5771#1 TTCCTTGCCTCCCCTCTCCTGCAGAATTCTGGTAACGATCCA----AGTGTGT---GTTC 189 ** * * * * * ****** * **** ** * ** * * consensus_5771#0 GCGTGACAATACTGTAGTGAACAATTGTTGTAAAATTCGTAAGCAAGTCATTCGGGACAT 296 consensus_5771#1 TCGCGCCCACGTGTGTGTGTGCAG--GTGAAAAAAGAAGCAACTAAAAC-CACCGAATTT 246 ** * * * *** ** ** **** * ** ** * * * * * consensus_5771#0 TCGGCAGATTCTGGAAAACCCAACAAAGAGAAGCGTTTCGTGCTACAGAAAGAGTTCCAA 356 consensus_5771#1 TCCAC-GCTTCCAGTTGTGAAAAGAGAGAAAAGAATTTGGCTTTTAACCAA------CGA 299 ** * * *** * ** * *** *** *** * * * ** * * consensus_5771#0 TTTCCTGCGCCATACAAAATGCGTGACTAGACACATACACACACACACACAAAGAGAGTG 416 consensus_5771#1 CCACCCGCGCGCAGTGTGTGATATAGTTAGATA-ATTTGTACGGGACTGGCAGGAACTAG 358 ** **** * **** * ** ** * ** * consensus_5771#0 TGAGGAACGGAAGACACATCGTCGTTCTCATTTCCGGGAAGTACGAGTACGAGCTAGCAG 476 consensus_5771#1 CCCCGGACAGAAAAAAAA--GTTAGGCTCA------AAAGGTTCGACACCGTGTCGG--A 408 * ** *** * * * ** **** * ** *** ** * * consensus_5771#0 CAACAGTAACAACAGTATTACAGTGGAGGCTTGTCCAGCACAACTGTCGTGAACGCGAAC 536 consensus_5771#1 TTACGTATACTCTGGACGTTTTTTGTTTTTTGTTTTAATTTGGT--TTGGGTCTTCGTGT 466 ** ** * * ** * * * * * * ** consensus_5771#0 GGCGGCAACTGTGCGTGTGTGTGTTGGGAAA-GCAGCTCGGGAAGTAGCAGGTGTATCTG 595 consensus_5771#1 GAAGGCTTTTATCTGTCCGGTTCTCGCCTACTACAGATCCTTACGAAGGTGTTGTAATTT 526 * *** * * ** * * * * * *** ** * * ** * **** * consensus_5771#0 CTCTGGTGCCATCTTGTCGTGTGTCCACAGCACACCGCCGGAAAACTACTGCCGACCGAA 655 consensus_5771#1 TTGCGTTG------TGTTACGTGTGCAAGAGGTAC-ACCAGAAACGGATTGCCAA---AT 576 * * ** *** **** ** ** ** **** * **** * * consensus_5771#0 GAAACGAACCACGGCAACCAGCAAACACCGTTAGCAGTCCAATGAAACCAAGTTTCAAGA 715 consensus_5771#1 CGAAGCAAGCACAGAAAGTAAGAGGTTACAGCAGAAAG--AGAGAGGTATAGCTTTA--- 631 ** ** *** * ** * * * ** * * ** ** ** * consensus_5771#0 ACGGAAAGTTCGCCACATCCATCTACGAAAAATGTCTCTGCCAAAAGAATGGAATCTCCA 775 consensus_5771#1 ---------CCACCACA-CCACC-----AAAGTAGATTTGTCTGAAAGACAAG---TTCA 673 * ***** *** * *** * * ** * ** * * ** consensus_5771#0 GACATCGCAGGAGTGTCTTAATCAGTACCTGCGCCCACAAAGCCTCTTTTCGGAGGATAT 835 consensus_5771#1 GTGGTGATAGTATTACATAAACTGGTGCTCTAGACTGGAGCAGCAGTT-------AATAA 726 * * ** * * * ** ** * * * * * ** *** consensus_5771#0 CGAAATACAGCCCCACGCGGACGATAACCGGCTCCGGTTCGACGGCGTGTACCATCCCTC 895 consensus_5771#1 CCTCAGTCAACATTACGGAGACACACTTAGGCACCATAGTATTAGACTACACTATAC--- 783 * * ** * *** *** *** ** * * ** ** * consensus_5771#0 CATCCCGGAGCAGCGATGCCGGGCGCCTCTCAATGCTGCCCTGCTGGCCGAGTTCGAGAA 955 consensus_5771#1 CGTATTGAAATAGTTAGAC--ATTGAAGTTGGAGGCGACCACTTCGA---ACTTCGCGCA 838 * * * * ** * * * * * ** ** * * **** * * consensus_5771#0 CAGTGGTTCCATGTTCTCGATCCAGTCCGCACCGGTCGTTACCGCTGCTGCAGTCTCGAC 1015 consensus_5771#1 TAGGAAAATTCTAGATTAAATCCTCCTCA-GCGGGTGGAGGACCGCGTGACAATACTG-T 896 ** * * **** * * *** * * * ** * * consensus_5771#0 CACGGCCGCACCGACGACGACGACCGTCACCGAAGGTCCGAGCCTGCTGCTCGATGACTT 1075 consensus_5771#1 AGTGGACGAATTGGTG-TAAAATTCGTAAGCAAG-------------------------- 929 ** ** * * * * *** * * * consensus_5771#0 TGGCATCCCAACGCAACCGGTTGCAGGAACGACGACGACGACCAACGGCGCCGGCGATGA 1135 consensus_5771#1 ------------------------------------------------------------ consensus_5771#0 ACGCAGCGACACACTGCTCCCGGCCTTCCTCACTGGCCCTCGATACGCACTACAACCTG 1194 consensus_5771#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||