cluster # 5774

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Anopheles gambiae
cluster # 5774 cluster # 5774 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5774#0 length = 1410 sequences # 3

consensus_5774#1 length = 489 sequences # 1

consensusID : consensus_5774#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1410
fasta sequence

                              [TATTCTACAAAAAGTGCATGGTACAGTGTATGCAGCTGAGCAACGAAAAGCCAATGTACGATTTGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCACGCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGCTGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCCGGCCAGGTGATACACAACTTCCTCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTCTCGCGACGGCCGAATACTGTCTCGAGACCGTGCAGCAGCTGGAGGACAAGCTGAAGGAAAAGATCGACAAGCAGTACGTCGCGAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATCGCATCATTTCCAACTGCATCCAGCTGCTGGTGCACGATCTCGATGCGGCCTGCGAACAGTCGCTACTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGTGCGACCAGAGCGGCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATCTGGCCAACAGCCGCAAGTATTACACGCAGTTTTGCCACAAGTTCGTTAACTCCTTCATTCCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTCCGGCTCGTCGTCCGCATCGGGCACGGCAGCGCTGGTCGCCAGTGCGTCCAGCTCGAGCCTTTCCGAGGGTGGCGCCAGCGGTGGTGCCGCATCCGGTGGGAACATTCTCGGCTGCGAGCAGCTCCTGCTGGACACGCACAGCCTGAAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCGCAGGTGCAGCGAAAACCACCCGCCAGCTACACGAAGGTCGTCGTCAAGGGCATGGCAAAGGCGGAAAGCAGCGTGGTAGAGTTTCACAAGATACTGGAGATGAAGAATGTGCGCAAGATCGAGCAGCAACAGCTGGTGGAAGCTTACAAGCGGGCTTGCCCGCAGCTGCAGCAGCAACCGCCGACGTCCTCGGCTACCGCTGGCAGTCAGGCGGTGGGCGCCGAAAGTGGCAACAGCACGCAGCAAAGCAACGAACCGCCCACTTCGGGCGGGAATTCAACGCAATCGCAGCAAATTGCAGCGGCTGCAGCCGCAATCAGTGGCGCCGGTTCCAGTATTATGGCCCTGGGAGACTCGCTAATGGACAAGGGAAGAATTAAGAAGATAGAAAATTTAATCAAAAATCGGTTACCGAACTAGTGCGGCTAGAAATCCCATTTCCCTTGGTTTCCCTTACGCATTCGGTATTTGCCCATAAATACATAAGCTTAACAAGGGTGATGTACGTTAATAAAATAATCAAACA]

[+] EMBL BX628155             [TATTCTACAAAAAGTGCATGGTACAGTGTATGCAGCTGAGCAACGAAAAGCCAATGTACGATTTGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCACGCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGCTGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCCGGCCAGGTGATACACAACTTCCTCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTCTCGCGACGGCCGAATACTGTCTCGAGACCGTGCAGCAGCTGGAGGACAAGCTGAAGGAAAAGATCGACAAGCAGTACGTCGCGAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATCGCATCATTTCCAACTGCATCCAGCTGCTGGTGCACGATCTCGATGCGGCCTGCGAACAGTCGCTACTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGTGCGACCAGAGCGGCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATCTGGCCAACAGCCGCAAGTATTACACGCAGTTTTGCCACAAGTTCGTTAACTCCTTCATTCCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTCCGGCTCGTCGTCCGCATCGGGCACGGCAGCGCTGGTCGCCAGTGCGTCCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM604913             [                                                             ccgGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCACGCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGCTGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCAGGCCAGGTGATACACAACTTCCTCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTCTCGCGACGGCCGAATATTGTCTCGAGACCGTCCAGCAGCTGGAGGACAAGCTGAAGGAAAAGATCGACAAGCAGTACGTCGCCAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATCGCATCATTTCCAACTGCATCCAGCTGCTGGTACACGATCTCGATGCGGCCTGCGAACAGTCGCTGCTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGGGCGACCAGAGCGGCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATCTGGCCAACAGCCGCAAGTATTACACGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX622380             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGCCGACCTCGTCCGGCTCGTCGTCCGCATCGGGCACGGCAGCGCTGGTCGCCAGTGCGTCCAGCTCGAGCCTTTCCGAGGGTGGCGCCAGCGGTGGTGCCGCATCCGGTGGGAACATTCTCGGCTGCGAGCAGCTCCTGCTGGACACGCACAGCCTGAAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCGCAGGTGCAGCGAAAACCACCCGCCAGCTACACGAAGGTCGTCGTCAAGGGCATGGCAAAGGCGGAAAGCAGCGTGGTAGAGTTTCACAAGATACTGGAGATGAAGAATGTGCGCAAGATCGAGCAGCAACAGCTGGTGGAAGCTTACAAGCGGGCTTGCCCGCAGCTGCAGCAGCAACCGCCGACGTCCTCGGCTACCGCTGGCAGTCAGGCGGTGGGCGCCGAAAGTGGCAACAGCACGCAGCAAAGCAACGAACCGCCCACTTCGGGCGGGAATTCAACGCAATCGCAGCAAATTGCAGCGGCTGCAGCCGCAATCAGTGGCGCCGGTTCCAGTATTATGGCCCTGGGAGACTCGCTAATGGACAAGGGAAGAATTAAGAAGATAGAAAATTTAATCAAAAATCGGTTACCGAACTAGTGCGGCTAGAAATCCCATTTCCCTTGGTTTCCCTTACGCATTCGGTATTTGCCCATAAATACATAAGCTTAACAAGGGTGATGTACGTTAATAAAATAATCAAACA]




>consensus_5774#0
TATTCTACAAAAAGTGCATGGTACAGTGTATGCAGCTGAGCAACGAAAAGCCAATGTACG
ATTTGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCAC
GCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGC
TGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCCGGCCAGGTGATACACAACTTCC
TCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTC
TCGCGACGGCCGAATACTGTCTCGAGACCGTGCAGCAGCTGGAGGACAAGCTGAAGGAAA
AGATCGACAAGCAGTACGTCGCGAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATC
GCATCATTTCCAACTGCATCCAGCTGCTGGTGCACGATCTCGATGCGGCCTGCGAACAGT
CGCTACTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGTGCGACCAGAGCG
GCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATC
TGGCCAACAGCCGCAAGTATTACACGCAGTTTTGCCACAAGTTCGTTAACTCCTTCATTC
CCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTCCGGCTCGTCGTCCGCAT
CGGGCACGGCAGCGCTGGTCGCCAGTGCGTCCAGCTCGAGCCTTTCCGAGGGTGGCGCCA
GCGGTGGTGCCGCATCCGGTGGGAACATTCTCGGCTGCGAGCAGCTCCTGCTGGACACGC
ACAGCCTGAAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCGCAGGTGCAGCGAAAAC
CACCCGCCAGCTACACGAAGGTCGTCGTCAAGGGCATGGCAAAGGCGGAAAGCAGCGTGG
TAGAGTTTCACAAGATACTGGAGATGAAGAATGTGCGCAAGATCGAGCAGCAACAGCTGG
TGGAAGCTTACAAGCGGGCTTGCCCGCAGCTGCAGCAGCAACCGCCGACGTCCTCGGCTA
CCGCTGGCAGTCAGGCGGTGGGCGCCGAAAGTGGCAACAGCACGCAGCAAAGCAACGAAC
CGCCCACTTCGGGCGGGAATTCAACGCAATCGCAGCAAATTGCAGCGGCTGCAGCCGCAA
TCAGTGGCGCCGGTTCCAGTATTATGGCCCTGGGAGACTCGCTAATGGACAAGGGAAGAA
TTAAGAAGATAGAAAATTTAATCAAAAATCGGTTACCGAACTAGTGCGGCTAGAAATCCC
ATTTCCCTTGGTTTCCCTTACGCATTCGGTATTTGCCCATAAATACATAAGCTTAACAAG
GGTGATGTACGTTAATAAAATAATCAAACA

consensusID : consensus_5774#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [ACTTACATATANCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTTCCGGCTCGTCGTCCGCATCGGGCACGGCAGNGNCTGGTCGNCCAGTTGNCGTCCAGCCTCNAAGNCCTTTCCGAGGNNTGGCCCCAGCCGNTGGTGCCCCTTCCGNNGGGAANCATTCTCGGCTGCAACCACCTCCTGCTGGACCCCCACAGCCCTGAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCCCAGGGTGCACCAAAACCCACCCGCCCAGCCTACNCCAAAGGGTCNTTCGTCCAAGNGGNCTTTGGCCAAGAGGCCGGAAAATTNAANTAAATTAAAANGGTNCNNTGGANTGCCAANNCCCANNNCCNNNNNGGGCGNNCCCCTCCTACCTTNCAAGCCAGTAACCCTGAAGCTGATGCCCGAAAGCAGCGTGGTAGAGTTCACAAGATACTGGAGATGAAGAATGTGTCGCAGATCGAGCC]

[+] EMBL BX624248             [ACTTACATATANCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTTCCGGCTCGTCGTCCGCATCGGGCACGGCAGNGNCTGGTCGNCCAGTTGNCGTCCAGCCTCNAAGNCCTTTCCGAGGNNTGGCCCCAGCCGNTGGTGCCCCTTCCGNNGGGAANCATTCTCGGCTGCAACCACCTCCTGCTGGACCCCCACAGCCCTGAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCCCAGGGTGCACCAAAACCCACCCGCCCAGCCTACNCCAAAGGGTCNTTCGTCCAAGNGGNCTTTGGCCAAGAGGCCGGAAAATTNAANTAAATTAAAANGGTNCNNTGGANTGCCAANNCCCANNNCCNNNNNGGGCGNNCCCCTCCTACCTTNCAAGCCAGTAACCCTGAAGCTGATGCCCGAAAGCAGCGTGGTAGAGTTCACAAGATACTGGAGATGAAGAATGTGTCGCAGATCGAGCC]




>consensus_5774#1
ACTTACATATANCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTTCCGGC
TCGTCGTCCGCATCGGGCACGGCAGNGNCTGGTCGNCCAGTTGNCGTCCAGCCTCNAAGN
CCTTTCCGAGGNNTGGCCCCAGCCGNTGGTGCCCCTTCCGNNGGGAANCATTCTCGGCTG
CAACCACCTCCTGCTGGACCCCCACAGCCCTGAAACGGTGCTGATGGATCTGCCCTCCAT
CGGGTCCCAGGGTGCACCAAAACCCACCCGCCCAGCCTACNCCAAAGGGTCNTTCGTCCA
AGNGGNCTTTGGCCAAGAGGCCGGAAAATTNAANTAAATTAAAANGGTNCNNTGGANTGC
CAANNCCCANNNCCNNNNNGGGCGNNCCCCTCCTACCTTNCAAGCCAGTAACCCTGAAGC
TGATGCCCGAAAGCAGCGTGGTAGAGTTCACAAGATACTGGAGATGAAGAATGTGTCGCA
GATCGAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5774#0      TATTCTACAAAAAGTGCATGGTACAGTGTATGCAGCTGAGCAACGAAAAGCCAATGTACG 60
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      ATTTGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCAC 120
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      GCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGC 180
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      TGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCCGGCCAGGTGATACACAACTTCC 240
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      TCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTC 300
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      TCGCGACGGCCGAATACTGTCTCGAGACCGTGCAGCAGCTGGAGGACAAGCTGAAGGAAA 360
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      AGATCGACAAGCAGTACGTCGCGAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATC 420
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      GCATCATTTCCAACTGCATCCAGCTGCTGGTGCACGATCTCGATGCGGCCTGCGAACAGT 480
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      CGCTACTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGTGCGACCAGAGCG 540
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      GCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATC 600
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      TGGCCAACAGCCGCAAGTATTACACGCAGTTTTGCCACAAGTTCGTTAACTCCTTCATTC 660
consensus_5774#1      ------------------------------------------------ACTTACATATAN 12
                                                                      ***     **  

consensus_5774#0      CCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGT-CCGGCTCGTCGTCCGCA 719
consensus_5774#1      CCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTTCCGGCTCGTCGTCCGCA 72
                      ****************************************** *****************

consensus_5774#0      TCGGGCACGGCAGCGC-TGGTCGCC-AGT--GCGTCCAGC-TCGA--GCCTTTCCGAGGG 772
consensus_5774#1      TCGGGCACGGCAGNGNCTGGTCGNCCAGTTGNCGTCCAGCCTCNAAGNCCTTTCCGAGGN 132
                      ************* *  ****** * ***   ******** ** *   *********** 

consensus_5774#0      T-GGCGCCAGC-GGTGGTGCCGCATCCGGTGGGAAC-ATTCTCGGCTGCGAGCAGCTCCT 829
consensus_5774#1      NTGGCCCCAGCCGNTGGTGCCCCTTCCGNNGGGAANCATTCTCGGCTGCAACCACCTCCT 192
                        *** ***** * ******* * ****  *****  ************ * ** *****

consensus_5774#0      GCTGGACACGCACAGCCTGAAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCGCAGG- 888
consensus_5774#1      GCTGGACCCCCACAGCCCTGAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCCCAGGG 252
                      ******* * *******   ********************************** **** 

consensus_5774#0      TGCAGCGAAAACCACCCGCCAG--CTACACGAA--GGTCGT-CGTC---AAGGGCATGGC 940
consensus_5774#1      TGCACCAAAACCCACCCGCCCAGCCTACNCCAAAGGGTCNTTCGTCCAAGNGGNCTTTGG 312
                      **** * *** *********    **** * **  **** * ****     ** * * * 

consensus_5774#0      AAAGGCGGAAAGCAGCGTGGTAGAGTTTCACAAGATACTGGAGATGAAGAATGTGCGCAA 1000
consensus_5774#1      CCAAGAGGCCGGAAAATTNAANTAAATTAAAANGGTNCNNTGGANTGCCAANN--CCCAN 370
                        * * **   * *   *     *  ** * * * * *    **     **    * ** 

consensus_5774#0      GATCGAGCAGCAACAGCTGGTGGAAGCTTACAAGCGGGCTTGCCCGCAGCTGCAGCAGCA 1060
consensus_5774#1      NNCCNNNNNGGGCGNNCCCCTCCTACCTTNCAAGCCAGTAACCCTGAAGCTGATGCCCGA 430
                         *     *      *   *   * *** *****  *    ** * *****  **   *

consensus_5774#0      ACCGCCGACGTCCTCGGCTACCGCTGGCAGTCAGGCGGTGGGCGCCGAAAGTGGCAACAG 1120
consensus_5774#1      A--AGCAGCGT-----GGTAGAGTTCACAAG-ATACTGGAGATGAAGAATGTGTCG-CAG 481
                      *    *  ***     * **  * *  **   *  * *  *  *  *** *** *  ***

consensus_5774#0      CACGCAGCAAAGCAACGAACCGCCCACTTCGGGCGGGAATTCAACGCAATCGCAGCAAAT 1180
consensus_5774#1      ATCGAGCC---------------------------------------------------- 489
                        **   *                                                    

consensus_5774#0      TGCAGCGGCTGCAGCCGCAATCAGTGGCGCCGGTTCCAGTATTATGGCCCTGGGAGACTC 1240
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      GCTAATGGACAAGGGAAGAATTAAGAAGATAGAAAATTTAATCAAAAATCGGTTACCGAA 1300
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      CTAGTGCGGCTAGAAATCCCATTTCCCTTGGTTTCCCTTACGCATTCGGTATTTGCCCAT 1360
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      AAATACATAAGCTTAACAAGGGTGATGTACGTTAATAAAATAATCAAACA 1410
consensus_5774#1      --------------------------------------------------