cluster # 5786

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5786 cluster # 5786 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5786#0 length = 706 sequences # 2

consensus_5786#1 length = 627 sequences # 2

consensusID : consensus_5786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 706
fasta sequence

                              [CCGCCCACGCGTCCGGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCAGTACCAGGACCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGAAAATCTACGCAAACAGGAGGAAAGCGTTGCGAAACAGGAGGCAATGCGCCGCAAGACCATCGAGCACGAGATGGAGCTGCGGGAGAAAAACAAGATGAAGCTGCTCGAGGCGGAACTGCGT]

[+] EMBL BM648967             [CCGCCCACGCGTCCGGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCAGTACCAGGACCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGAAAATCTACGCAAACAGGAGGAAAGCGTTGCGAAACAGGAGGCAATGCGCCGCAAGACCATCGAGCACGAGATGGAGCTGCGGGAGAAAAACAAGATGAAGCTGCTCGAGGCGGAACTGCGT]
[+] EMBL BM606493             [                                               ccgCCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCAGTACCAGGACCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGAAAATCTACGCAAACAGGAGGA                                                                                                    ]




>consensus_5786#0
CCGCCCACGCGTCCGGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAAC
GCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTT
GTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGG
ACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAA
GGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGC
CGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAA
AATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCA
CATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCT
GGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCAGTACCAGGACCAGCTCGCTCGCAA
ACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGAAAATCTACGCAAACA
GGAGGAAAGCGTTGCGAAACAGGAGGCAATGCGCCGCAAGACCATCGAGCACGAGATGGA
GCTGCGGGAGAAAAACAAGATGAAGCTGCTCGAGGCGGAACTGCGT

consensusID : consensus_5786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 627
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGATCGGAGCGAGGAGCACATTTTCCTGAGCACGGTTACAGAACGTTGCTAACCGAATTGTCTGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCCAGTACCCAGGACCAGCTCGCTCGCAAACGGTACGAGGA]

[+] EMBL BM617138             [CCGCCCACGCGTCCGCCCACGCGTCCGATCGGAGCGAGGAGCACATTTTCCTGAGCACGGTTACAGAACGTTGCTAACCGAATTGTCTGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCCAGTACCCAGGACCAGCTCGCTCGCAAACGGTACGAGGA]
[+] EMBL BM649483             [                        CCGACCGGAGCGAGGAGCACATTTTCCTGAGCACGGTTACAGAACGTTGCTAACCGAATTGTCTGCATCTCGTACAGTTGTTATCGTGCAGGCACAAAACCCCCCGAACGCATTACGTGTGCAGTGATAAACAGTGAAAGTCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCAAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCA                                                            ]




>consensus_5786#1
CCGCCCACGCGTCCGCCCACGCGTCCGATCGGAGCGAGGAGCACATTTTCCTGAGCACGG
TTACAGAACGTTGCTAACCGAATTGTCTGCATCTTGTACAGTTGTTATCGTGCAGGCACG
AAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCG
CAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGAC
CGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATG
CCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGC
TGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGC
TGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGG
AGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGC
GTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCCAGTACCCAGGA
CCAGCTCGCTCGCAAACGGTACGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5786#0      ------------------------------------------------------------
consensus_5786#1      CCGCCCACGCGTCCGCCCACGCGTCCGATCGGAGCGAGGAGCACATTTTCCTGAGCACGG 60
                                                                                  

consensus_5786#0      -------------CCGCCCACGCGTCCGGCATCTTGTACAGTTGTTATCGTGCAGGCACG 47
consensus_5786#1      TTACAGAACGTTGCTAACCGAATTGTCTGCATCTTGTACAGTTGTTATCGTGCAGGCACG 120
                                   *   **       * ********************************

consensus_5786#0      AAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCG 107
consensus_5786#1      AAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCG 180
                      ************************************************************

consensus_5786#0      CAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGAC 167
consensus_5786#1      CAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGAC 240
                      ************************************************************

consensus_5786#0      CGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATG 227
consensus_5786#1      CGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATG 300
                      ************************************************************

consensus_5786#0      CCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGC 287
consensus_5786#1      CCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGC 360
                      ************************************************************

consensus_5786#0      TGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGC 347
consensus_5786#1      TGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGC 420
                      ************************************************************

consensus_5786#0      TGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGG 407
consensus_5786#1      TGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGG 480
                      ************************************************************

consensus_5786#0      AGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGC 467
consensus_5786#1      AGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGC 540
                      ************************************************************

consensus_5786#0      GTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCC-AGTACC-AGGA 525
consensus_5786#1      GTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCCAGTACCCAGGA 600
                      ************************************************ ****** ****

consensus_5786#0      CCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGA 585
consensus_5786#1      CCAGCTCGCTCGCAAACGGTACGAGGA--------------------------------- 627
                      ***************************                                 

consensus_5786#0      AAATCTACGCAAACAGGAGGAAAGCGTTGCGAAACAGGAGGCAATGCGCCGCAAGACCAT 645
consensus_5786#1      ------------------------------------------------------------
                                                                                  

consensus_5786#0      CGAGCACGAGATGGAGCTGCGGGAGAAAAACAAGATGAAGCTGCTCGAGGCGGAACTGCG 705
consensus_5786#1      ------------------------------------------------------------
                                                                                  

consensus_5786#0      T 706
consensus_5786#1      -