These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence [CCGCCCACGCGTCCGCGAAGGAATGGACCGCTTTCTCCAACTCACTTCCGGCAGTGAGGAAAGATAGAATAGCACGGTTGTAATTTACAAAACCTACGGAGTGCGGTCGATGAAGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACCGACGAAGCTATCGTTGGGTGTGCAGGTACGCTCGTATCGTGGAATATCGCTGTTGTGAAAGTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTGTGCTGTGATCCAGTGATCCGCCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCAGCGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTGGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCGTATGCGACACTTGCCGGTTTAGAGCCTCAGTACGGTCTATACTCCGCCTTTGTCGGTGGCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTACTATCACTCATGACTAGCCGACACAC-GGGCTACGGAGGTGCGTCCGGTCCACAGCTCGCCATACTGCTATGCTTCCTGTCCGGGCGTGGTCGAGCTGCTGATGGCCGTCCTACGGCTTGGTGCGCTGGTCGATCTCATCTCGCTGCCCCGTTACGGTGGGCTTCACG] [+] EMBL BM613040 [CCGCCCACGCGTCCGCGAAGGAATGGACCGCTTTCTCCAACTCACTTCCGGCAGTGAGGAAAGATAGAATAGCACGGTTGTAATTTACAAAACCTACGGAGTGCGGTCGATGAAGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACCGACGAAGCTATCGTTGGGTGTGCAGGTACGCTCGTATCGTGGAATATCGCTGTTGTGAAAGTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTGTGCTGTGATCCAGTGATCCGCCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCAGCGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTGGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCGTATGCGACACTTGCCGGTTTAGAGCCTCAGTACGGTCTATACTCCGCCTTTGTCGGTGGCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTACTATCACTCATGACTAGCCGACACAC GGGCTACGGAGGTGCGTCCGGTCCACAGCT ] [+] EMBL BM607092 [ ccgGGTCGATGAGGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACCGACGAAGCAATCGTTGGGTGTGCAGGTACGCGCGT GTTGAATATCGCTGTTGTGAAAGTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTGTGCTGTGATCCAGTGATCCGCCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACACTTGCCGGTTTAGAGCCACAGTACGGTCTATACTCCGCCTTTGTCGGTGGCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTACTATCACTCATGACTAGCCGACACACGGGGCTACGGAGGTGCGTCCGGTCCACAGCTCGCCATACTGCTATGCTTCCTGTCCGGGCGTGGTCGAGCTGCTGATGGCCGTCCTACGGCTTGGTGCGCTGGTCGATCTCATCTCGCTGCCCCGTTACGGTGGGCTTCACG] consensusID : consensus_5788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [CCGCGAGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTCGTGTACTACCTCGGGCGCCACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAGATCGGTGACGGGCGAGGGTGGCGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCGCACATGGCTTTCGGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGAGGCAATACGACGCACGCACGTTTCACCAGGCGAACACAGGCTGTGCTGGAGTGGCAGTGCCGGGTAGTGAGGAAAAGTAGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCTTTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACACTTGCCGGTTTAGAGCCACAGT] [+] EMBL BM615593 [CCGCGAGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTCGTGTACTACCTCGGGCGCCACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAGATCGGTGACGGGCGAGGGTGGCGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCGCACATGGCTTTCGGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGAGGCAATACGACGCACGCACGTTTCACCAGGCGAACACAGGCTGTGCTGGAGTGGCAGTGCCGGGTAGTGAGGAAAAGTAGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCTTTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACA ] [+] EMBL BM613278 [ ccgGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTCGTGTACTACCTCGGGCGCCACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAGATCGGTGACGGGCGAGGGTGGCGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCGCACATGGCTTTCAGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGAGGCAATACGACGCACGCACGTTTCACCAGGCGAACACAGGCTGTGCTGGAGTGGCAGTGCCGGGTAGTGAGGAAAAGTAGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCTTTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACACTTGCCGGTTTAGAGCCACAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5788#0 ------------------------------------------------------------ consensus_5788#1 CCGCGAGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTC 60 consensus_5788#0 --------------CCGCCCACGCGTCCGCGAAGGAATGGACCGCTTTCTCCAACTCACT 46 consensus_5788#1 GTGTACTACCTCGGGCGCC-ACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAG 119 **** ** * ** * * * *** * * * * consensus_5788#0 TCCGGCAGTGAGGAAAGATAGAATAGCACGGTTGTAATTTACAAAACCTA-CGGAGTGCG 105 consensus_5788#1 ATCGGTGACGGGCGAGGGTGG--CGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCG 177 *** * * * * * * * ***** *** * * * * ***** consensus_5788#0 GTCGATGAAGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACC 165 consensus_5788#1 CAC-ATGGCTTTCGGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGA 236 * *** ** * * ***** * * ** * **** ** * * consensus_5788#0 GACGAAGCTATCGTTGGGTGTGCAGGTACGCTCGTATCGTGGAATATCGCTGTTGTGAAA 225 consensus_5788#1 GGCAATACGACGCACGCACGTTTCACCAGGCG---AACACAGGCTGT-GCTGGAGTGGCA 292 * * * * * * ** * ** * * * * * **** *** * consensus_5788#0 GTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTG-TG 284 consensus_5788#1 GTGCCGGGTAGTGAGGAAAAGT-AGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCT 351 ** * * * ** **** * * * * ** * * consensus_5788#0 CTGTGATCCAGTGATCCG-CCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCAG 343 consensus_5788#1 TTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCAC 411 ** * * * *** * * * * ** ******************* consensus_5788#0 CGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTAT 403 consensus_5788#1 GGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTAT 471 *********************************************************** consensus_5788#0 CACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCG 463 consensus_5788#1 CACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCG 531 ************************************************************ consensus_5788#0 TGGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGG 523 consensus_5788#1 TCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGG 591 * ********************************************************** consensus_5788#0 CGTATGCGACACTTGCCGGTTTAGAGCCTCAGTACGGTCTATACTCCGCCTTTGTCGGTG 583 consensus_5788#1 CATATGCGACACTTGCCGGTTTAGAGCCACAGT--------------------------- 624 * ************************** **** consensus_5788#0 GCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTAC 643 consensus_5788#1 ------------------------------------------------------------ consensus_5788#0 TATCACTCATGACTAGCCGACACACGGGCTACGGAGGTGCGTCCGGTCCACAGCTCGCCA 703 consensus_5788#1 ------------------------------------------------------------ consensus_5788#0 TACTGCTATGCTTCCTGTCCGGGCGTGGTCGAGCTGCTGATGGCCGTCCTACGGCTTGGT 763 consensus_5788#1 ------------------------------------------------------------ consensus_5788#0 GCGCTGGTCGATCTCATCTCGCTGCCCCGTTACGGTGGGCTTCACG 809 consensus_5788#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||