These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1108 fasta sequence [CCGGTAATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAAGTAAATGTTTTATCAAACAACCAATTATCAATATTTCATTCATATGCCGTGATAGAGACTGCTTATACATACTACGTGTTGTGCATTGCATTCCTTGTTTTGTGTGGAGCTTCATTGACCAACTACGCATTATCCATGACTCAAGTCTGCTGATGATTGAACAAGAAAACAAAATAAAACGCTATGGTGTGGTTTTGAACGCTAGTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGAGAAAGTGGAAGAAAACGCTGTACATTCAGACACATCGTATGAAAAGGCGTGTCGTCGAGGATCAGCACCTAGCACACCTGTTATGGGTCAAAAGGGAGAGTCAACATCAAGATTTACAAATTTCTTCTCTAAAAGATCCTTTCGATCTATTCCTTTAAACGGACTAAATCT] [+] EMBL BM627964 [CCGGTAATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAAGTAAATGTTTTATCAAACAACCAATTATCAATATTTCATTCATATGCCGTGATAGAGACTGCTTATACATACTACGTGTTGTGCATTGCATTCCTTGTTTTGTGTGGAGCTTCATTGACCAACTACGCATTATCCATGACTCAAGTCTGCTGATGATTGAACAAGAAAACAAAATAAAACGCTATGGTGTGGTTTTGAACGCTAGTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCC ] [+] EMBL BX627366 [ AGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATT GGGAACAACAGCACTTTCGATAGTAAAAAATCTAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGAGAAAGTGGAAGAAAACGCTGTACATTCAGACACATCGTATGAAAAGGCGTGTCGTCGAGGATCAGCACCTAGCACACCTGTTATGGGTCAAAAGGGAGAGTCAACATCAAGATTTACAAATTTCTTCTCTAAAAGATCCTTTCGATCTATTCCTTTAAACGGACTAAATCT] consensusID : consensus_5792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGCGAGTCAGTTGTTTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGA] [+] EMBL BM644936 [CCGCGAGTCAGTTGTTTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGA] consensusID : consensus_5792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [CCGATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAACATATGCAACCGCGAACAGAGTATACATGATTTAAAACGAAAAATAAATTGTATTATCGTCGAACATAAATGTTGGATTCAATTTATAAGAATCGTTTGAATCAACAGGAATCCTTTGTTTTACAAAACGAACAAATGTTAGTTGAATAAAATCGAAATACACTATCATAATTATTGACAGAACGAAAAGATTGAAGTTAATTCAGTTTTGGAATTTTACGTATGGCTTCCGACGCATTATTCCCGTCCACCGCGGAATCTTCTCGCCGAAGATCAACATTCTATGTACCATTGACCCAAACATCTGAGGAAATTGAAAGTATACATGAGATCGCAGAAACCACAGTTTCTGTTGAAAAAGAGTGCACGCAGAATATCCAGCACTTTTCTATAGAGAGCACCTATCAACCGGACCTGAGTGCATGTAGCTTTGCTTGGAGTTTGAATGATTCATTTAATGACAATTTGGACCATG] [+] EMBL BM607830 [CCGATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAACATATGCAACCGCGAACAGAGTATACATGATTTAAAACGAAAAATAAATTGTATTATCGTCGAACATAAATGTTGGATTCAATTTATAAGAATCGTTTGAATCAACAGGAATCCTTTGTTTTACAAAACGAACAAATGTTAGTTGAATAAAATCGAAATACACTATCATAATTATTGACAGAACGAAAAGATTGAAGTTAATTCAGTTTTGGAATTTTACGTATGGCTTCCGACGCATTATTCCCGTCCACCGCGGAATCTTCTCGCCGAAGATCAACATTCTATGTACCATTGACCCAAACATCTGAGGAAATTGAAAGTATACATGAGATCGCAGAAACCACAGTTTCTGTTGAAAAAGAGTGCACGCAGAATATCCAGCACTTTTCTATAGAGAGCACCTATCAACCGGACCTGAGTGCATGTAGCTTTGCTTGGAGTTTGAATGATTCATTTAATGACAATTTGGACCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5792#0 CCGGTAATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAG 60 consensus_5792#1 ------------------------------------------------------------ consensus_5792#2 ------------------------------------------------------------ consensus_5792#0 AACAGTGAATACAAGTAAATGTTTTATCAAACAACCAATTATCAATATTTCATTCATATG 120 consensus_5792#1 ------------------------------------------------------------ consensus_5792#2 ------------------------------------------------------------ consensus_5792#0 CCGTGATAGAGACTGCTTATACATACTACGTGTTGTGCATTGCATTCCTTGTTTTGTGTG 180 consensus_5792#1 ------------------------------------------------------------ consensus_5792#2 ------------------------------------------------------------ consensus_5792#0 GAGCTTCATTGACCAACTACGCATTATCCATGACTCAAGTCTGCTGATGATTGAACAAGA 240 consensus_5792#1 ------------------------------------------------------------ consensus_5792#2 ------------------------------------------------------------ consensus_5792#0 AAACAAAATAAAACGCTATGGTGTGGTTTTGAACGCTAGTGTAAACATAGACGATGACGA 300 consensus_5792#1 --------------------CCGCGAGTCAGT-TGTT--TGTAAACATAGACGATGACGA 37 consensus_5792#2 ------------------------------------------------------------ consensus_5792#0 AACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGAT 360 consensus_5792#1 AACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGAT 97 consensus_5792#2 -------------------------------------------------------CCGAT 5 ***** consensus_5792#0 TCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGG 420 consensus_5792#1 TCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGG 157 consensus_5792#2 GTA-TTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTG 64 ** ** * * * * * * * *** * ** ** * consensus_5792#0 TATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGA 480 consensus_5792#1 TATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGA 217 consensus_5792#2 AAT--------ACAACATATGCAACCGCGAACAGAGTATACATGATTTAAAACGAAAAAT 116 ** * *** * * **** * ** ****** * *** * consensus_5792#0 ACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTT 540 consensus_5792#1 ACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTT 277 consensus_5792#2 AAATTGTATTAT--CGTCGAACA--TAAATGTTGGATTCAATTTATAAGAATCGTTTGAA 172 * * * * ** *** *** * *** * *** * ** * * consensus_5792#0 GCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACC---- 596 consensus_5792#1 GCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACC---- 333 consensus_5792#2 TCAACAGGAATCCTTTGTTTTA----CAAAACGAACAAATGTTAGTTGAATAAAATCGAA 228 * **** * * *** ** * *** * * * ** * ** ** * consensus_5792#0 ATTCCTCATCACG--CATTGG-GGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGC 653 consensus_5792#1 ATTCCTCATCACG--CATTGG-G-AACAACAGCACTTTCGATAGTAAAAAATCGAGTAGC 389 consensus_5792#2 ATACACTATCATAATTATTGACAGAACGAAAAGATTGAAGTTAATTCAGTTTTGGAATTT 288 ** * **** **** *** * * * * * ** * * * * consensus_5792#0 ATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGA-TTATATGATTAGTCCTAC 712 consensus_5792#1 ATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGA-TTATATGATTAGTCCTAC 448 consensus_5792#2 TACGTATGGCT-TCCGACGCATTATTCCCGTCCACCGCGGAATCTTCTCGCCGAAGATCA 347 * * * ** ** * ** * * * ** *** * * * * consensus_5792#0 AAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATT 772 consensus_5792#1 AAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATT 508 consensus_5792#2 ACATTCTAT--GTACCATTGACCCAAAC-ATCTGAGGAAATTGAAAGTATACATGAGATC 404 * * ***** ** *** ** ** * ** * *** * * ** ** consensus_5792#0 GCTGAAA----AGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGC 828 consensus_5792#1 GCTGAAA----AGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGC 564 consensus_5792#2 GCAGAAACCACAGTTTCTGTTGAAAAAGAGT-GCACGCAGAATATCCAGCACTTTTCTAT 463 ** **** ** * ** *** * ** * * ** * * *** *** consensus_5792#0 TTCGAATACCAGTCAAA-GAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCT 887 consensus_5792#1 TTCGAATACCAGTCAAA-GAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCT 623 consensus_5792#2 AGAGAGCACCTATCAACCGGACCTGAGTGCATGTAGCTTTGCTTGGAGTTTGAATGATTC 523 ** *** **** * * ** * * ** *** ** *** * consensus_5792#0 GCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGAGAAAGTGGAA 947 consensus_5792#1 GCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGA---------- 673 consensus_5792#2 ATTTAATGACAATTTGGACCATG------------------------------------- 546 *** * * * * * consensus_5792#0 GAAAACGCTGTACATTCAGACACATCGTATGAAAAGGCGTGTCGTCGAGGATCAGCACCT 1007 consensus_5792#1 ------------------------------------------------------------ consensus_5792#2 ------------------------------------------------------------ consensus_5792#0 AGCACACCTGTTATGGGTCAAAAGGGAGAGTCAACATCAAGATTTACAAATTTCTTCTCT 1067 consensus_5792#1 ------------------------------------------------------------ consensus_5792#2 ------------------------------------------------------------ consensus_5792#0 AAAAGATCCTTTCGATCTATTCCTTTAAACGGACTAAATCT 1108 consensus_5792#1 ----------------------------------------- consensus_5792#2 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||