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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1108 fasta sequence
[CCGGTAATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAAGTAAATGTTTTATCAAACAACCAATTATCAATATTTCATTCATATGCCGTGATAGAGACTGCTTATACATACTACGTGTTGTGCATTGCATTCCTTGTTTTGTGTGGAGCTTCATTGACCAACTACGCATTATCCATGACTCAAGTCTGCTGATGATTGAACAAGAAAACAAAATAAAACGCTATGGTGTGGTTTTGAACGCTAGTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGAGAAAGTGGAAGAAAACGCTGTACATTCAGACACATCGTATGAAAAGGCGTGTCGTCGAGGATCAGCACCTAGCACACCTGTTATGGGTCAAAAGGGAGAGTCAACATCAAGATTTACAAATTTCTTCTCTAAAAGATCCTTTCGATCTATTCCTTTAAACGGACTAAATCT]
[+] EMBL BM627964 [CCGGTAATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAAGTAAATGTTTTATCAAACAACCAATTATCAATATTTCATTCATATGCCGTGATAGAGACTGCTTATACATACTACGTGTTGTGCATTGCATTCCTTGTTTTGTGTGGAGCTTCATTGACCAACTACGCATTATCCATGACTCAAGTCTGCTGATGATTGAACAAGAAAACAAAATAAAACGCTATGGTGTGGTTTTGAACGCTAGTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCC ]
[+] EMBL BX627366 [ AGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATT GGGAACAACAGCACTTTCGATAGTAAAAAATCTAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGAGAAAGTGGAAGAAAACGCTGTACATTCAGACACATCGTATGAAAAGGCGTGTCGTCGAGGATCAGCACCTAGCACACCTGTTATGGGTCAAAAGGGAGAGTCAACATCAAGATTTACAAATTTCTTCTCTAAAAGATCCTTTCGATCTATTCCTTTAAACGGACTAAATCT]
consensusID : consensus_5792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[CCGCGAGTCAGTTGTTTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGA]
[+] EMBL BM644936 [CCGCGAGTCAGTTGTTTGTAAACATAGACGATGACGAAACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGATTCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGGTATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGAACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTTGCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACCATTCCTCATCACGCATTGGGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGCATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGATTATATGATTAGTCCTACAAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATTGCTGAAAAGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGCTTCGAATACCAGTCAAAGAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCTGCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGA]
consensusID : consensus_5792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[CCGATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAACATATGCAACCGCGAACAGAGTATACATGATTTAAAACGAAAAATAAATTGTATTATCGTCGAACATAAATGTTGGATTCAATTTATAAGAATCGTTTGAATCAACAGGAATCCTTTGTTTTACAAAACGAACAAATGTTAGTTGAATAAAATCGAAATACACTATCATAATTATTGACAGAACGAAAAGATTGAAGTTAATTCAGTTTTGGAATTTTACGTATGGCTTCCGACGCATTATTCCCGTCCACCGCGGAATCTTCTCGCCGAAGATCAACATTCTATGTACCATTGACCCAAACATCTGAGGAAATTGAAAGTATACATGAGATCGCAGAAACCACAGTTTCTGTTGAAAAAGAGTGCACGCAGAATATCCAGCACTTTTCTATAGAGAGCACCTATCAACCGGACCTGAGTGCATGTAGCTTTGCTTGGAGTTTGAATGATTCATTTAATGACAATTTGGACCATG]
[+] EMBL BM607830 [CCGATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTGAATACAACATATGCAACCGCGAACAGAGTATACATGATTTAAAACGAAAAATAAATTGTATTATCGTCGAACATAAATGTTGGATTCAATTTATAAGAATCGTTTGAATCAACAGGAATCCTTTGTTTTACAAAACGAACAAATGTTAGTTGAATAAAATCGAAATACACTATCATAATTATTGACAGAACGAAAAGATTGAAGTTAATTCAGTTTTGGAATTTTACGTATGGCTTCCGACGCATTATTCCCGTCCACCGCGGAATCTTCTCGCCGAAGATCAACATTCTATGTACCATTGACCCAAACATCTGAGGAAATTGAAAGTATACATGAGATCGCAGAAACCACAGTTTCTGTTGAAAAAGAGTGCACGCAGAATATCCAGCACTTTTCTATAGAGAGCACCTATCAACCGGACCTGAGTGCATGTAGCTTTGCTTGGAGTTTGAATGATTCATTTAATGACAATTTGGACCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5792#0 CCGGTAATGTATTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAG 60
consensus_5792#1 ------------------------------------------------------------
consensus_5792#2 ------------------------------------------------------------
consensus_5792#0 AACAGTGAATACAAGTAAATGTTTTATCAAACAACCAATTATCAATATTTCATTCATATG 120
consensus_5792#1 ------------------------------------------------------------
consensus_5792#2 ------------------------------------------------------------
consensus_5792#0 CCGTGATAGAGACTGCTTATACATACTACGTGTTGTGCATTGCATTCCTTGTTTTGTGTG 180
consensus_5792#1 ------------------------------------------------------------
consensus_5792#2 ------------------------------------------------------------
consensus_5792#0 GAGCTTCATTGACCAACTACGCATTATCCATGACTCAAGTCTGCTGATGATTGAACAAGA 240
consensus_5792#1 ------------------------------------------------------------
consensus_5792#2 ------------------------------------------------------------
consensus_5792#0 AAACAAAATAAAACGCTATGGTGTGGTTTTGAACGCTAGTGTAAACATAGACGATGACGA 300
consensus_5792#1 --------------------CCGCGAGTCAGT-TGTT--TGTAAACATAGACGATGACGA 37
consensus_5792#2 ------------------------------------------------------------
consensus_5792#0 AACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGAT 360
consensus_5792#1 AACAAAGTGCCATGAGGAACAAACTTCTTGTCGCCTTCAATCGAATACGTCAACACCGAT 97
consensus_5792#2 -------------------------------------------------------CCGAT 5
*****
consensus_5792#0 TCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGG 420
consensus_5792#1 TCGGTTGAGAAAATCTCGAAGCCGAAGCAACATCTTATCCAATCTATCAAAGGATCATGG 157
consensus_5792#2 GTA-TTACAAATAATACAATATATGACTATTGTTGTGCGTAATGCGTTGTTAGAACAGTG 64
** ** * * * * * * * *** * ** ** *
consensus_5792#0 TATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGA 480
consensus_5792#1 TATCGCGGTAGAAAACCTCGCAAGCCGCAGTGGAATCGTATGTGATTTGATTAGAAGAGA 217
consensus_5792#2 AAT--------ACAACATATGCAACCGCGAACAGAGTATACATGATTTAAAACGAAAAAT 116
** * *** * * **** * ** ****** * *** *
consensus_5792#0 ACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTT 540
consensus_5792#1 ACAGTCCAATACAATGTCAGACAATTCAATACTAACGGCAAAAGACAAATCTAAGACGTT 277
consensus_5792#2 AAATTGTATTAT--CGTCGAACA--TAAATGTTGGATTCAATTTATAAGAATCGTTTGAA 172
* * * * ** *** *** * *** * *** * ** * *
consensus_5792#0 GCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACC---- 596
consensus_5792#1 GCCACAGAATTTATTTCTTGTGAATTCAATGCCACCGAAGAGTTCTTTCTTACACC---- 333
consensus_5792#2 TCAACAGGAATCCTTTGTTTTA----CAAAACGAACAAATGTTAGTTGAATAAAATCGAA 228
* **** * * *** ** * *** * * * ** * ** ** *
consensus_5792#0 ATTCCTCATCACG--CATTGG-GGAACAACAGCACTTTCGATAGTAAAAAATCGAGTAGC 653
consensus_5792#1 ATTCCTCATCACG--CATTGG-G-AACAACAGCACTTTCGATAGTAAAAAATCGAGTAGC 389
consensus_5792#2 ATACACTATCATAATTATTGACAGAACGAAAAGATTGAAGTTAATTCAGTTTTGGAATTT 288
** * **** **** *** * * * * * ** * * * *
consensus_5792#0 ATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGA-TTATATGATTAGTCCTAC 712
consensus_5792#1 ATTGCAGGACTATCTTCTAAACTACCCGCACCTGCCATGGA-TTATATGATTAGTCCTAC 448
consensus_5792#2 TACGTATGGCT-TCCGACGCATTATTCCCGTCCACCGCGGAATCTTCTCGCCGAAGATCA 347
* * * ** ** * ** * * * ** *** * * * *
consensus_5792#0 AAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATT 772
consensus_5792#1 AAAATCTATCAGTTTCATACGCCGAACCCATTCCACCAAACTTTCGAGAAGCAATTCATT 508
consensus_5792#2 ACATTCTAT--GTACCATTGACCCAAAC-ATCTGAGGAAATTGAAAGTATACATGAGATC 404
* * ***** ** *** ** ** * ** * *** * * ** **
consensus_5792#0 GCTGAAA----AGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGC 828
consensus_5792#1 GCTGAAA----AGCCTTACTTCTAAATGTGTTGATCAAAGCGGTTGTAACACAAGTCTGC 564
consensus_5792#2 GCAGAAACCACAGTTTCTGTTGAAAAAGAGT-GCACGCAGAATATCCAGCACTTTTCTAT 463
** **** ** * ** *** * ** * * ** * * *** ***
consensus_5792#0 TTCGAATACCAGTCAAA-GAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCT 887
consensus_5792#1 TTCGAATACCAGTCAAA-GAATTAGAATACGCTCGACTATGCCGTATATTGGAAAAACCT 623
consensus_5792#2 AGAGAGCACCTATCAACCGGACCTGAGTGCATGTAGCTTTGCTTGGAGTTTGAATGATTC 523
** *** **** * * ** * * ** *** ** *** *
consensus_5792#0 GCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGAGAAAGTGGAA 947
consensus_5792#1 GCACAATTAGATCATATGATAAGAGATATCTTTATTTTATGTAAAGACGA---------- 673
consensus_5792#2 ATTTAATGACAATTTGGACCATG------------------------------------- 546
*** * * * * *
consensus_5792#0 GAAAACGCTGTACATTCAGACACATCGTATGAAAAGGCGTGTCGTCGAGGATCAGCACCT 1007
consensus_5792#1 ------------------------------------------------------------
consensus_5792#2 ------------------------------------------------------------
consensus_5792#0 AGCACACCTGTTATGGGTCAAAAGGGAGAGTCAACATCAAGATTTACAAATTTCTTCTCT 1067
consensus_5792#1 ------------------------------------------------------------
consensus_5792#2 ------------------------------------------------------------
consensus_5792#0 AAAAGATCCTTTCGATCTATTCCTTTAAACGGACTAAATCT 1108
consensus_5792#1 -----------------------------------------
consensus_5792#2 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||