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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1213 fasta sequence
[CCGACGAAAGCATTCGTGAGTGGTAGTTTACTATTTATAGTGTCATACCAACACCTACCGAATATCTAACACAGTGCGATAAAAAATCGCTATGGCTGGATTGATTTCGGGTGCTTTAGGAGGAACGGTTGGTAAATCAGCGACAGTGGCACCCATCGTAGGATTAGTTGGTCCGCAAGCCGCTGTTACTTTAGCTGTATTAGGTGGTGTGTTCGCTGGGCCCATCATAGTAAAGGCTGCTGTGCAAACGGTGGCTGTAGTTGGAAAGGCGGTTGTTAAGACGGTTGCAATTACTGCTGAAGTTGTGGGAACAGTTGCATCTGCTGTTGTTGAGACAAGCGTAGACACTGTTCGCATATTGTGTAATGCCCATTACGTTACAGAACAAAAATCTGGAAACGCGTCAGAAAGACGTAACAGTCGTAATGAAAATTGTACAAACAGTAAGAGTAACAATGAAAGCAAACAATCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCACGTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACACCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGGTTTAGGGATAATTTTGAGATGTTACGCGAACATTATCCCGAGTTGTATAGAATATTGTGCAGGCATGCAGGGCACACTCAAAGAATTCCGAGGGTGTTCAACGTGTTTCACAGGATTGGTGGAAGAATTGATAAACTGCAGTATGGATGGATTTTGAAATTGTCTGAAGTAGATTTTTCGGCAGGTCCTACAGCTGCGAATCTAGCAATTTTTGAAGCATATAGACAAGAAGTTTTAGATTTGTATGACAGTGAGATAAGATTAAGATACGAACGGAACTATAGTGAAGAGGACATGGCAGAAATAAGAAGGGCAAAAGAGATGATGGAAAACACNACGAATGAAGAATTGTTTGAAAATGCTCTCGAAGGATACAATCTGGAACATAGATACAAC]
[+] EMBL BM640087 [CCGACGAAAGCATTCGTGAGTGGTAGTTTACTATTTATAGTGTCATACCAACACCTACCGAATATCTAACACAGTGCGATAAAAAATCGCTATGGCTGGATTGATTTCGGGTGCTTTAGGAGGAACGGTTGGTAAATCAGCGACAGTGGCACCCATCGTAGGATTAGTTGGTCCGCAAGCCGCTGTTACTTTAGCTGTATTAGGTGGTGTGTTCGCTGGGCCCATCATAGTAAAGGCTGCTGTGCAAACGGTGGCTGTAGTTGGAAAGGCGGTTGTTAAGACGGTTGCAATTACTGCTGAAGTTGTGGGAACAGTTGCATCTGCTGTTGTTGAGACAAGCGTAGACACTGTTCGCATATTGTGTAATGCCCATTACGTTACAGAACAAAAATCTGGAAACGCGTCAGAAAGACGTAACAGTCGTAATGAAAATTGTACAAACAGTAAGAGTAACAATGAAAGCAAACAATCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGG ]
[+] EMBL BX622315 [ AACTGGAACTGCAAGAAACGCTGGCGATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCACGTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACACCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGGTTTAGGGATAATTTTGAGATGTTACGCGAACATTATCCCGAGTTGTATAGAATATTGTGCAGGCATGCAGGGCACACTCAAAGAATTCCGAGGGTGTTCAACGTGTTTCACAGGATTGGTGGAAGAATTGATAAACTGCAGTATGGATGGATTTTGAAATTGTCTGAAGTAGATTTTTCGGCAGGTCCTACAGCTGCGAATCTAGCAATTTTTGAAGCATATAGACAAGAAGTTTTAGATTTGTATGACAGTGAGATAAGATTAAGATACGAACGGAACTATAGTGAAGAGGACATGGCAGAAATAAGAAGGGCAAAAGAGATGATGGAAAACACNACGAATGAAGAATTGTTTGAAAATGCTCTCGAAGGATACAATCTGGAACATAGATACAAC]
[+] EMBL BX620172 [ AACTTAAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCACGTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGNTATATACGGCCACCGACACCTGATAGCCAACTGCNAAGAGCTCACGTGCTACGGTTTAGGCATAATTCTGAGATGTTACGCNAACATTATCCCGAGTTGTATAGA ]
consensusID : consensus_5793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[CCGGCCGTTTATATGGCGGCTGCGCCCGTTTTTGAAGAAGTTGCTCAAGTAGTTAATGAGGCGTTTGCTGACTTAGTTGAAGATGTTACAGAAGTAGTTGTTAAAACAGCTAAAAAAACTGGCGAAATGGTGGTTAAAGCAGCAGAAGTAACTGCTGAAGTTGTGGAAAAAACAGCAGAAATAACTGCCGAAATTATTTTGAATAGAAATACTATATTACTGCCCCCTATCAAAAGCCAGCAACAGAAAGGAAATAATTCAAACACTAGATCTAACGAAAATAGTACAAACCATAAGGAAAACAATGGAAATAAACAGTCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATAATGGAGATGATCCAAGACGACGAAGAAACTTGAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAAGTTACAGAGCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACCTCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGATTTAGGGATAATTTTGAGATGTTACGCGAACA]
[+] EMBL BM608212 [CCGGCCGTTTATATGGCGGCTGCGCCCGTTTTTGAAGAAGTTGCTCAAGTAGTTAATGAGGCGTTTGCTGACTTAGTTGAAGATGTTACAGAAGTAGTTGTTAAAACAGCTAAAAAAACTGGCGAAATGGTGGTTAAAGCAGCAGAAGTAACTGCTGAAGTTGTGGAAAAAACAGCAGAAATAACTGCCGAAATTATTTTGAATAGAAATACTATATTACTGCCCCCTATCAAAAGCCAGCAACAGAAAGGAAATAATTCAAACACTAGATCTAACGAAAATAGTACAAACCATAAGGAAAACAATGGAAATAAACAGTCACAACAAAATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGCGATAATGGAGATGATCCAAGACGACGAAGAAACTTGAAAACTACGCGCAACTGTCAGGATGAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCGGTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAAGTTACAGAGCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCGACCTCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGATTTAGGGATAATTTTGAGATGTTACGCGAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5793#0 CCGACGAAAGCATTCGTGAGTGGTAGTTTACTATTTATAGTGTCATACCAACACCTACCG 60
consensus_5793#1 ------------------------------------------------------------
consensus_5793#0 AATATCTAACACAGTGCGATAAAAAATCGCTATGGCTGGATTGATTTCGGGTGCTTTAGG 120
consensus_5793#1 ------------------------------------------------------------
consensus_5793#0 AGGAACGGTTGGTAAATCA-GCGACAGTGGCACCCATCGTAGGATTAGTTGGTCCGCAAG 179
consensus_5793#1 --------CCGGCCGTTTATATGGCGGCTGCGCCCGTTTTTGAAGAAGTTGCTCAAGTAG 52
** * * * * * ** *** * * * * ***** ** **
consensus_5793#0 CCGCTGTTACTTTAGCTGTATTAGGTGGTGTGTTCGCTGGGCCCATCATAGTAAAGGCTG 239
consensus_5793#1 TTAATGAGGCGTTTGCTGACTTAGTTGAAGA---------------TGTTACAGAAGTAG 97
** * ** **** **** ** * * * * * *
consensus_5793#0 CTGTGCAAACGGTGGCTGTAGTTGGAAAGGCGGTTGTTAAGACGGTTGCAATTACTGCTG 299
consensus_5793#1 TTGTTAAAACAGCTAAAAAAACTGGCGAAATGGTGGTTAAAGCAGCAGAAGTAACTGCTG 157
*** **** * * *** * *** ***** * * * * * *******
consensus_5793#0 AAGTTGTGGGAACAGTTGCATCTGCTGTTGTTGAGACAAGCGTAGACACTGTTCGCATAT 359
consensus_5793#1 AAGTTGTGGAAAAAACAGCAGAAATAACTGCCGAAATTATTTTGAATAGAAATACTATAT 217
********* ** * *** ** ** * * * * * * ****
consensus_5793#0 TGTGTAATGCCCATTACGTTACAG-AACAAAAATCTGGAAACGCGTCAGAAAGACGTAAC 418
consensus_5793#1 TAC-TGCCCCCTATCAAAAGCCAGCAACAGAAA---GGAAATAATTCAAA------CACT 267
* * ** ** * *** **** *** ***** *** * *
consensus_5793#0 AGTCGTAATGAAAATTGTACAAACAGTAAGAGTAACAATGAAAGCAAACAATCACAACAA 478
consensus_5793#1 AGATCTAACGAAAATAGTACAAACCATAAGGAAAACAATGGAAATAAACAGTCACAACAA 327
** *** ****** ******** **** ******* ** ***** *********
consensus_5793#0 AATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGC 538
consensus_5793#1 AATACAAAAACCAACAAACAAACGCAATCAAAACAAACTGGAACTGCAAGAAACGCTGGC 387
************************************************************
consensus_5793#0 GATGATGACGATGATCCCAGACGACGAAGAAACTTAAAAACTACGCGCAACTGTCAGGAT 598
consensus_5793#1 GATAATGGAGATGATCCAAGACGACGAAGAAACTTGAAAACTACGCGCAACTGTCAGGAT 447
*** *** ******** ***************** ************************
consensus_5793#0 GAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCG 658
consensus_5793#1 GAAACATCGGATGAAACGGAACCACACACTGGAGCTTCTCACTTGCACTCACGAACAGCG 507
************************************************************
consensus_5793#0 GTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAC 718
consensus_5793#1 GTACATACCGTACGATTTGCTGGAGAAATCAGGCGAGCTGCCGACAGGTCTGGCCACCAA 567
***********************************************************
consensus_5793#0 GTTAGAGATCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCG 778
consensus_5793#1 GTTACAGAGCTTATTGAAGACGGGGCCAGCACAATCAGGGATGGGTATATACGGCCACCG 627
**** *** ***************************************************
consensus_5793#0 ACACCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGGTTTAGGGATAATTTTGAGATG 838
consensus_5793#1 ACCTCTGATAGCCAACTGCAAAGAGCTCACGTGCTACGATTTAGGGATAATTTTGAGATG 687
** ********************************** *********************
consensus_5793#0 TTACGCGAACATTATCCCGAGTTGTATAGAATATTGTGCAGGCATGCAGGGCACACTCAA 898
consensus_5793#1 TTACGCGAACA------------------------------------------------- 698
***********
consensus_5793#0 AGAATTCCGAGGGTGTTCAACGTGTTTCACAGGATTGGTGGAAGAATTGATAAACTGCAG 958
consensus_5793#1 ------------------------------------------------------------
consensus_5793#0 TATGGATGGATTTTGAAATTGTCTGAAGTAGATTTTTCGGCAGGTCCTACAGCTGCGAAT 1018
consensus_5793#1 ------------------------------------------------------------
consensus_5793#0 CTAGCAATTTTTGAAGCATATAGACAAGAAGTTTTAGATTTGTATGACAGTGAGATAAGA 1078
consensus_5793#1 ------------------------------------------------------------
consensus_5793#0 TTAAGATACGAACGGAACTATAGTGAAGAGGACATGGCAGAAATAAGAAGGGCAAAAGAG 1138
consensus_5793#1 ------------------------------------------------------------
consensus_5793#0 ATGATGGAAAACACNACGAATGAAGAATTGTTTGAAAATGCTCTCGAAGGATACAATCTG 1198
consensus_5793#1 ------------------------------------------------------------
consensus_5793#0 GAACATAGATACAAC 1213
consensus_5793#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||