cluster # 5803

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Anopheles gambiae
cluster # 5803 cluster # 5803 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5803#0 length = 948 sequences # 2

consensus_5803#1 length = 535 sequences # 2

consensusID : consensus_5803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 948
fasta sequence

                              [CCGCCCACGCGTCCGCAACAACACCAGTGCATCCTCTAATACCAACCACAACACAGCCGCCACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACGCGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGGCCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTGGCACTACTAACAGTGGTGGCGGCGGCGGCGAAAGCAACAGCACCAGCACGAACGCACCTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGAAGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGCGGTTGAAGGTGGACGGTGGCAGCAAGTTCAAACTGGAAGATGCGTCCACACCGAATGCCGCCACACAGTCATCGTCGGTAGCCGAGCGGCGGTTCCGTGTACGAACCGTCCGGCCCGGCTAATCATGCACCAGAAGCACGGTTTGACTACTACTAAGCTCACCTCCTCGTCGGCCCTGGCCCAACGAAGGGCGCAGCAGCAGAATGGTGACAGCAGCAGTACCGCCACCACCGGGACGACCTCCTCCAGTGTTGCCAGCTCGCGGCCCCTATCGGCACCGGCGTCCGGGCTTGCCGCCGGCGAGCAGTACAACCGTGTGCCGGGCAGCGCCGCCAGTGCGGCCGGTGAGCAGCAGCAGACCGGTGCTGCCGCCACGGACCCCAACAGTCCGCTGCACCATCTCCGGCGGCCACCGAAGTCGGCGGGCGAAGAGAACAAGGAGAACGACAAGGAGAACGATAGCCGCAGCACGGCCCAGGCCACGCAGGCGGTCATACAGCGGCGCCGGCGTCAGAAGCGTCGTTCGACCGGCGTCGTTTCC]

[+] EMBL BM610007             [CCGCCCACGCGTCCGCAACAACACCAGTGCATCCTCTAATACCAACCACAACACAGCCGCCACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACGCGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGGCCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTGGCACTACTAACAGTGGTGGCGGCGGCGGCGAAAGCAACAGCACCAGCACGAACGCACCTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGAAGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGCGGTTGAAGGTGGACGGTGGCAGCAAGTTCAAACTGGAAGATGCGTCCACACCGAATGCCGCCACACAGTCATCGTCGGTAGCCGAGCGGCGGTTCCGTGTACGAACCGTCCGGCCCGGCTAATCATGCACCAGAAGCACGGTTTGACTACTACTAAGCTCACCTCCTCGTCGGCCCTGGCCCAACGAAGGGCGCAGCAGCAGA                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM654254             [                                                                                                                                                                                                                                                                                              CCGGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGAAGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGCGGTTGAAGGTGGACGGTGGCAGCAAGTTCAAACTGGAAGATGCGTCCACACCGAATGCCGCCACACAGTCATCGTCGGTAG CGAGCGGCGGTTCCGTGTACGAACCGTCCGGCCCGGCTAATTAGGCACCAG AGCACGGTTTGACTACTACTAAGCTCACCTCCTCGTCGGCCCTGGCCCAACGAAGGGCGCAGCAGCAGAATGGTGACAGCAGCAGTACCGCCACCACCGGGACGACCTCCTCCAGTGTTGCCAGCTCGCGGCCCCTATCGGCACCGGCGTCCGGGCTTGCCGCCGGCGAGCAGTACAACCGTGTGCCGGGCAGCGCCGCCAGTGCGGCCGGTGAGCAGCAGCAGACCGGTGCTGCCGCCACGGACCCCAACAGTCCGCTGCACCATCTCCGGCGGCCACCGAAGTCGGCGGGCGAAGAGAACAAGGAGAACGACAAGGAGAACGATAGCCGCAGCACGGCCCAGGCCACGCAGGCGGTCATACAGCGGCGCCGGCGTCAGAAGCGTCGTTCGACCGGCGTCGTTTCC]




>consensus_5803#0
CCGCCCACGCGTCCGCAACAACACCAGTGCATCCTCTAATACCAACCACAACACAGCCGC
CACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACGCGAACTCACT
AACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGGCCGTGGCGGA
CGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTGGCACTACTAA
CAGTGGTGGCGGCGGCGGCGAAAGCAACAGCACCAGCACGAACGCACCTGCGGACAATAG
TGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGAAGGCGGATCCGGC
CACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGCGGTTGAAGGTGGA
CGGTGGCAGCAAGTTCAAACTGGAAGATGCGTCCACACCGAATGCCGCCACACAGTCATC
GTCGGTAGCCGAGCGGCGGTTCCGTGTACGAACCGTCCGGCCCGGCTAATCATGCACCAG
AAGCACGGTTTGACTACTACTAAGCTCACCTCCTCGTCGGCCCTGGCCCAACGAAGGGCG
CAGCAGCAGAATGGTGACAGCAGCAGTACCGCCACCACCGGGACGACCTCCTCCAGTGTT
GCCAGCTCGCGGCCCCTATCGGCACCGGCGTCCGGGCTTGCCGCCGGCGAGCAGTACAAC
CGTGTGCCGGGCAGCGCCGCCAGTGCGGCCGGTGAGCAGCAGCAGACCGGTGCTGCCGCC
ACGGACCCCAACAGTCCGCTGCACCATCTCCGGCGGCCACCGAAGTCGGCGGGCGAAGAG
AACAAGGAGAACGACAAGGAGAACGATAGCCGCAGCACGGCCCAGGCCACGCAGGCGGTC
ATACAGCGGCGCCGGCGTCAGAAGCGTCGTTCGACCGGCGTCGTTTCC

consensusID : consensus_5803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence

                              [CCGACAACACCTCCAACAGCAACAACAACAACACCAGTGCATCCTCTAATACCAACCACAACACAGCCGCCACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACGCGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGGCCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTGGCACTACTAACAGTGGTGGCGGCGGCGGCGGCGAAAGCTACAGCACCAGCACGAACGCACCTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGAAGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGCGGTTGAAGGTGGACGGTGGCAGCAAGGTAAGGACCGTTGTGTGTAACTTGGGGCTTGCCGTTTGCAACCAGAATGCAACAATAGTCTTGCACACTTGCAAATGTGGGGCGGTTGG]

[+] EMBL BM636664             [CCGACAACACCTCCAACAGCAACAACAACAACACCAGTGCATCCTCTAATACCAACCACAACACAGCCGCCACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACGCGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGGCCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTGGCACTACTAACAGTGGTGGCGGCGGCGGCGGCGAAAGCTACAGCACCAGCACGAACGCACCTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGAAGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGCGGTTGAAGGTGGACGGTGGCAGCAAGGTAAGGACCGTTGTGTGTAACTTGGGGCTTGCCGTTTGCAACCAGAATGCAACAATAGTCTTGCACACTTGCAAATGTGGGGCGGTTGG]
[+] EMBL BX609072             [                                                  ACCAACCACAACACAGCCG         CCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACGCGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGGCCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGGCCGGGTCCCCGCCAGCAACAGTGGCACTACTAACAGTGGTGGCGGCGGCGGCGGCGAAAGCAACAGCACCAGCACGAACGCACCTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGAAGGCGGAACCGGCCACAACGA                                                                                                                                                          ]




>consensus_5803#1
CCGACAACACCTCCAACAGCAACAACAACAACACCAGTGCATCCTCTAATACCAACCACA
ACACAGCCGCCACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACG
CGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGG
CCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTG
GCACTACTAACAGTGGTGGCGGCGGCGGCGGCGAAAGCTACAGCACCAGCACGAACGCAC
CTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGA
AGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGC
GGTTGAAGGTGGACGGTGGCAGCAAGGTAAGGACCGTTGTGTGTAACTTGGGGCTTGCCG
TTTGCAACCAGAATGCAACAATAGTCTTGCACACTTGCAAATGTGGGGCGGTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5803#0      ---------CCGCCCAC-GCGTCCGCAACAACACCAGTGCATCCTCTAATACCAACCACA 50
consensus_5803#1      CCGACAACACCTCCAACAGCAACAACAACAACACCAGTGCATCCTCTAATACCAACCACA 60
                               ** ** ** **  *  ***********************************

consensus_5803#0      ACACAGCCGCCACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACG 110
consensus_5803#1      ACACAGCCGCCACCACCACCACCACCTACACTAAACGTTCACTGTTCGATATCGATAACG 120
                      ************************************************************

consensus_5803#0      CGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGG 170
consensus_5803#1      CGAACTCACTAACACTGGCCGAGAAGCTGCGCCACGAGGCGAACAAGTACGCGATCGCGG 180
                      ************************************************************

consensus_5803#0      CCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTG 230
consensus_5803#1      CCGTGGCGGACGGCGACCTGGACAGCCACCTGGTGGCCCGGGTCCCCGCCAGCAACAGTG 240
                      ************************************************************

consensus_5803#0      GCACTACTAACAGTGGTGGCGGCGGCGGCG---AAAGCAACAGCACCAGCACGAACGCAC 287
consensus_5803#1      GCACTACTAACAGTGGTGGCGGCGGCGGCGGCGAAAGCTACAGCACCAGCACGAACGCAC 300
                      ******************************   ***** *********************

consensus_5803#0      CTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGA 347
consensus_5803#1      CTGCGGACAATAGTGCAGCGAGTGCTGGTGCCGCCGTGCCGCCATCGCCAACACTGCGGA 360
                      ************************************************************

consensus_5803#0      AGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGC 407
consensus_5803#1      AGGCGGATCCGGCCACAACGACCACCACCGGTGTCACGGCCGAACGAAGGCCCTCGTGGC 420
                      ************************************************************

consensus_5803#0      GGTTGAAGGTGGACGGTGGCAGCAAGTTCAAACTGGAAGATGCGTCCACACCGAATGCCG 467
consensus_5803#1      GGTTGAAGGTGGACGGTGGCAGCAAGGTAAG---GACCGTTGTGTGTAACTTGGGGCTTG 477
                      ************************** * *    *   * ** **  *    *      *

consensus_5803#0      CCACACAGTCATCGTCGGTAGCCGAGCGGCGGTTCCGTGTACGAACCG-TCCGGCCCGGC 526
consensus_5803#1      CC-----GTTTGCAACCAGAATGCAACAATAGTCTTGCACACTTGCAAATGTGGGGCGGT 532
                      **     **   *  *   *    * *    **   *   **   *   *  **  *** 

consensus_5803#0      TAATCATGCACCAGAAGCACGGTTTGACTACTACTAAGCTCACCTCCTCGTCGGCCCTGG 586
consensus_5803#1      TGG--------------------------------------------------------- 535
                      *                                                           

consensus_5803#0      CCCAACGAAGGGCGCAGCAGCAGAATGGTGACAGCAGCAGTACCGCCACCACCGGGACGA 646
consensus_5803#1      ------------------------------------------------------------
                                                                                  

consensus_5803#0      CCTCCTCCAGTGTTGCCAGCTCGCGGCCCCTATCGGCACCGGCGTCCGGGCTTGCCGCCG 706
consensus_5803#1      ------------------------------------------------------------
                                                                                  

consensus_5803#0      GCGAGCAGTACAACCGTGTGCCGGGCAGCGCCGCCAGTGCGGCCGGTGAGCAGCAGCAGA 766
consensus_5803#1      ------------------------------------------------------------
                                                                                  

consensus_5803#0      CCGGTGCTGCCGCCACGGACCCCAACAGTCCGCTGCACCATCTCCGGCGGCCACCGAAGT 826
consensus_5803#1      ------------------------------------------------------------
                                                                                  

consensus_5803#0      CGGCGGGCGAAGAGAACAAGGAGAACGACAAGGAGAACGATAGCCGCAGCACGGCCCAGG 886
consensus_5803#1      ------------------------------------------------------------
                                                                                  

consensus_5803#0      CCACGCAGGCGGTCATACAGCGGCGCCGGCGTCAGAAGCGTCGTTCGACCGGCGTCGTTT 946
consensus_5803#1      ------------------------------------------------------------
                                                                                  

consensus_5803#0      CC 948
consensus_5803#1      --