cluster # 5806

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Anopheles gambiae
cluster # 5806 cluster # 5806 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5806#0 length = 829 sequences # 3

consensus_5806#1 length = 638 sequences # 1

consensusID : consensus_5806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 829
fasta sequence

                              [CCGCCCACGCGTCCGCTATTCTGCAAAACCTCCAAACAAACCACA-AAAACGAACGACGAAAATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCAAAA-AAGCGGAAGATTGGAGCAAAAAGGCAGCAGGTAAAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGATGGTTCCTTTGCTGGGAATGCAGTTTTGCAATCCTCTGTGTACAGTACATCCTACACAT----ATATGTAGTGCATTTTAGCGGGTTTTTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTGTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGGAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTACCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCG]

[+] EMBL BM610418             [CCGCCCACGCGTCCGCTATTCTGCAAAACCTCCAAACAAACCACACAAAACGAACGACGAAAATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCAAAACAAGCGGAAGATTGGAGCAAAAAGGCAGCAGGTAAAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGATGGTTCCTTTGCTGGGAATGCAGTTTTGCAATCCTCTGTGTACAGTACATCCTACACATACAAATATGTAGTGCATTTTAGCGGGTTTTTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTGTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX608445             [                           aaCTCCACACCAACCTCA AAAACGAACGACGAAAATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCGAAA AAGCGGAAGATTGGAGCAAAAAGGCAGCAGGGACAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGTTGGTTCATTTACTGGGAATGCAATTTTGCAATCCTCTGTGTACAGTACATCCTACACAT    ATATGTAGTGCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGC                                                                                                           ]
[+] EMBL BM638209             [                                                                                                                                                                                                                                                                                                                                                                                            ccggaAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCG     TGCA       CTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTACCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCG]




>consensus_5806#0
CCGCCCACGCGTCCGCTATTCTGCAAAACCTCCAAACAAACCACAAAAACGAACGACGAA
AATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCAAAAAAGCGGAAGATTGG
AGCAAAAAGGCAGCAGGTAAAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGATGGTTCCT
TTGCTGGGAATGCAGTTTTGCAATCCTCTGTGTACAGTACATCCTACACATATATGTAGT
GCATTTTAGCGGGTTTTTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGA
GGCTTCTAATTTGTGTGTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTA
ATTCGATTTTTGGAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAAC
GCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAG
GCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAAT
TAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCAC
TAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGAT
GAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCG
GCACTCGTTTACCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGC
CTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCG

consensusID : consensus_5806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [CCGCCCACGCGTCCGGTACATCCTACACATATATGTAGTGCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTTCCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCGGAAACGAAAT]

[+] EMBL BM635816             [CCGCCCACGCGTCCGGTACATCCTACACATATATGTAGTGCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTTCCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCGGAAACGAAAT]




>consensus_5806#1
CCGCCCACGCGTCCGGTACATCCTACACATATATGTAGTGCATTTTAGCGGGTTTCTTTT
CGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTTTTTG
TGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGAAAAAAGAA
AAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTAC
CATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCG
CTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAAC
ATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATG
TTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTT
TGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTTCCGAGAAACT
CTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATA
GTGAAAGCGTTTATTGTGTAAGAAACCGGAAACGAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5806#0      CCGCCCACGCGTCCGCTATTCTGCAAAACCTCCAAACAAACCACAAAAACGAACGACGAA 60
consensus_5806#1      ------------------------------------------------------------
                                                                                  

consensus_5806#0      AATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCAAAAAAGCGGAAGATTGG 120
consensus_5806#1      ------------------------------------------------------------
                                                                                  

consensus_5806#0      AGCAAAAAGGCAGCAGGTAAAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGATGGTTCCT 180
consensus_5806#1      ------------------------------------------------------------
                                                                                  

consensus_5806#0      TTGCTGGGAATGCAGTTTTGCAATCCTCTGTGTACAGTACATCCTACACATATATGTAGT 240
consensus_5806#1      --------------------CCGCCCAC-GCGTCCGGTACATCCTACACATATATGTAGT 39
                                          *   ** * * ** * ************************

consensus_5806#0      GCATTTTAGCGGGTTTTTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGA 300
consensus_5806#1      GCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGA 99
                      **************** *******************************************

consensus_5806#0      GGCTTCTAATTTGTGTGTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTA 360
consensus_5806#1      GGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTA 159
                      **************** *******************************************

consensus_5806#0      ATTCGATTTTTGGAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAAC 420
consensus_5806#1      ATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAAC 219
                      ************ ***********************************************

consensus_5806#0      GCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAG 480
consensus_5806#1      GCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAG 279
                      ************************************************************

consensus_5806#0      GCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAAT 540
consensus_5806#1      GCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAAT 339
                      ************************************************************

consensus_5806#0      TAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCAC 600
consensus_5806#1      TAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCAC 399
                      ************************************************************

consensus_5806#0      TAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGAT 660
consensus_5806#1      TAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGAT 459
                      ************************************************************

consensus_5806#0      GAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCG 720
consensus_5806#1      GAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCG 519
                      ************************************************************

consensus_5806#0      GCACTCGTTTACCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGC 780
consensus_5806#1      GCACTCGTTTTCCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGC 579
                      ********** *************************************************

consensus_5806#0      CTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCG---------- 829
consensus_5806#1      CTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCGGAAACGAAAT 638
                      *************************************************