These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 952 fasta sequence [CCGACGAAGGAGACGCGCACGATCCAGCACATGCAGTATCTGGCCTGGCCGGACCATGACGTGCCGGCCGACCCGAACCTGTTCCTGCAGTTCACCGAGCGGGTGCGGTCGGCGCGTGAAACCACGCTGCCGCTCGAGATCGAGGCCAGCCTGAAGAACGTGAAGCTGCGCAGCGTGGACGAGAATGGTGGGCTGGACAACTCGGAGCGCCGAATCGTGCATACGGACAGTGACGACAGCCCGAACGATATGCCGTCCTCCACGTCGGTGCATCAGTATATTAGTGCTTCTAATCCGCCCATCATTGTGCACTGTTCGGCCGGAATTGGTCGGACCGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACT-GGCTCACCAACTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAGGAAACGATGCTCGATACGCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGCCACCGTTTCACCGTCCAATGGGCACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAGGCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTAATTTATTTCATCTTCGCATATCTCTGTGTTTTTTTCCGCCCGACCTCAGCCTCGGAAGGGATTGCCCGGTAGTGGTTTGGTAAAAACACAAGTACGTTTAGACTCGTAGTGTG] [+] EMBL BM626371 [CCGACGAAGGAGACGCGCACGATCCAGCACATGCAGTATCTGGCCTGGCCGGACCATGACGTGCCGGCCGACCCGAACCTGTTCCTGCAGTTCACCGAGCGGGTGCGGTCGGCGCGTGAAACCACGCTGCCGCTCGAGATCGAGGCCAGCCTGAAGAACGTGAAGCTGCGCAGCGTGGACGAGAATGGTGGGCTGGACAACTCGGAGCGCCGAATCGTGCATACGGACAGTGACGACAGCCCGAACGATATGCCGTCCTCCACGTCGGTGCATCAGTATATTAGTGCTTCTAATCCGCCCATCATTGTGCACTGTTCGGCCGGAATTGGTCGGACCGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCTACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACTGGGCTCACCAACTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAAGGAACGATGCTCGAT ] [+] EMBL BM611467 [ ccgACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACT GGCTCACCAACTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAGGAAACGATGCTCGATACGCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGCCACCGTTTCACCGTCCAATGGGCACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAGGCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTAATTTATTTCATCTTCGCATATCTCTGTGTTTTTTTCCGCCCGACCTCAGCCTCGGAAGGGATTGCCCGGTAGTGGTTTGGTAAAAACACAAGTACGTTTAGACTCGTAGTGTG] [+] EMBL BX623433 [ GTACNGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTACGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGCGGCGTCAAAAACGACCCCCACCACT GGCTCACCAAGTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATACGCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGCCACCGTTTCACCGTCCAATGGACACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAGGCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTAATTTATTTCATCTTCGCATATCTCTGTG TTTTTTCCGCCCGACCTCAACCTCGGAAGGGATTGCCCGGTAGTGGTTTG ] consensusID : consensus_5816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [AATCACGAGGTTACTGTTCGGCCGGTATCGGGCGGACGGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGNGGCGTCAAAAACGACCCCCACACTGGCTCACCAAGTAATGCCGTGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATACGCCCG] [+] EMBL BX466562 [AATCACGAGGTTACTGTTCGGCCGGTATCGGGCGGACGGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGNGGCGTCAAAAACGACCCCCACACTGGCTCACCAAGTAATGCCGTGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATACGCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5816#0 CCGACGAAGGAGACGCGCACGATCCAGCACATGCAGTATCTGGCCTGGCCGGACCATGAC 60 consensus_5816#1 ------------------------------------------------------------ consensus_5816#0 GTGCCGGCCGACCCGAACCTGTTCCTGCAGTTCACCGAGCGGGTGCGGTCGGCGCGTGAA 120 consensus_5816#1 ------------------------------------------------------------ consensus_5816#0 ACCACGCTGCCGCTCGAGATCGAGGCCAGCCTGAAGAACGTGAAGCTGCGCAGCGTGGAC 180 consensus_5816#1 ------------------------------------------------------------ consensus_5816#0 GAGAATGGTGGGCTGGACAACTCGGAGCGCCGAATCGTGCATACGGACAGTGACGACAGC 240 consensus_5816#1 ------------------------------------------------------------ consensus_5816#0 CCGAACGATATGCCGTCCTCCACGTCGGTGCATCAGTATATTAGTGCTTCTAATCCGCCC 300 consensus_5816#1 -----------------------------------------------------------A 1 consensus_5816#0 ATCATTGTGC-ACTGTTCGGCCGGAATTGGTCGGACCGGTGTGCTGATACTGATGGACAC 359 consensus_5816#1 ATCACGAGGTTACTGTTCGGCCGGTATCGGGCGGACGGGTGTGCTGATACTGATGGACAC 61 **** * ************* ** ** ***** *********************** consensus_5816#0 GGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGAT 419 consensus_5816#1 GGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGAT 121 ************************************************************ consensus_5816#0 GCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTG 479 consensus_5816#1 GCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTG 181 ********* ************************************************** consensus_5816#0 TATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTC 539 consensus_5816#1 TATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTC 241 ************************************************************ consensus_5816#0 TCCCACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACTGGCTCACCAACTAA 599 consensus_5816#1 TCCCACGGAAACGCGCAAAGNGGCGTCAAAAACGACCCCCAC-ACTGGCTCACCAAGTAA 300 ******************** *** ***************** ************* *** consensus_5816#0 TGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAGGAAACGATGCTCGATAC 659 consensus_5816#1 TGCCG-TGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATAC 359 ***** *************************** ************************** consensus_5816#0 GCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGC 719 consensus_5816#1 GCCCG------------------------------------------------------- 364 ***** consensus_5816#0 CACCGTTTCACCGTCCAATGGGCACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAG 779 consensus_5816#1 ------------------------------------------------------------ consensus_5816#0 GCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTA 839 consensus_5816#1 ------------------------------------------------------------ consensus_5816#0 ATTTATTTCATCTTCGCATATCTCTGTGTTTTTTTCCGCCCGACCTCAGCCTCGGAAGGG 899 consensus_5816#1 ------------------------------------------------------------ consensus_5816#0 ATTGCCCGGTAGTGGTTTGGTAAAAACACAAGTACGTTTAGACTCGTAGTGTG 952 consensus_5816#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||