These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5819#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGAAACAACAATCACACCAACCTTCCTCTTACCAGATAAAAAGGGTAGCTGAAAAGTACGTGATTCAATTTGTGGAACTAAAACTAGTGAAAAAAATAGTGTTCTTTGTGCGTGAGTGTGTGTGTGGAAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTAAACGATTGCAATATCGATCGGGCCGGTGAGCCGGAAGATTTGAAGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGGTGCTGAACAACACCAAGCTGGAATGGTGCAGCGTGGAGAAGCTGTTGCGCTTGCTGCCCGCCCTCGAGGAGCTGCATCTTAGCCTGAACGAGTATACGCATGTGCTGATCGACACG] [+] EMBL BM611900 [CCGAAACAACAATCACACCAACCTTCCTCTTACCAGATAAAAAGGGTAGCTGAAAAGTACGTGATTCAATTTGTGGAACTAAAACTAGTGAAAAAAATAGTGTTCTTTGTGCGTGAGTGTGTGTGTGGAAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTAAACGATTGCAATATCGATCGGGCCGGTGAGCCGGAAGATTTGAAGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGGTGCTGAACAACACCAAGCTGGAATGGTGCAGCGTGGAGAAGCTGTTGCGCTTGCTGCCCGCCCTCGAGGAGCTGCATCTTAGCCTGAACGAGTATACGCATGTGCTGATCGACACG] consensusID : consensus_5819#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [GCTCCGGAAAATCAAACAAAAAGGACAGCTGAAAAGTACGCGATTGAATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGTGTGTGTGTGTGTGGGAGTTAATTCCTGTTAGTGCCCTCAACAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTGAACGATTGCAATATCGATCGGGCCGGCGAGCCGGAAGATTTGAGGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGG] [+] EMBL BM640445 [GCTCCGGAAAATCAAACAAAAAGGACAGCTGAAAAGTACGCGATTGAATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGTGTGTGTGTGTGTGGGAGTTAATTCCTGTTAGTGCCCTCAACAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTGAACGATTGCAATATCGATCGGGCCGGCGAGCCGGAAGATTTGAGGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGG] consensusID : consensus_5819#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 341 fasta sequence [AAAAGAAAAAACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGAGTTTTCCTTCTGGGCCGTTTGGCTATCCGGATTTGTGCGTTTGAGAGAAAAGAAAGAAAAAAAAAACGCACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAAAAGGACAGCTGAAAAGTACGCGATTCGATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAGAAAGGCCACATGTGCTCGAGCGGTTTGTTTTT] [-] EMBL CNS08OD2 [AAAAGAAAAAACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGAGTTTTCCTTCTGGGCCGTTTGGCTATCCGGATTTGTGCGTTTGAGAGAAAAGAAAGAAAAAAAAAACGCACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAAAAGGACAGCTGAAAAGTACGCGATTCGATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCCC ] [+] EMBL CNS08OD1 [ tcaaTCTGGG CGTTTGGC ATCCGGATTTGTGCGTTTGAGAGAAAAGAAAGAAAAAAAAAACGCACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAAAAGGACAGCTGAAAAGTACGCGATTCGATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAGAAAGGCCACATGTGCTCGAGCGGTTTGTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5819#0 CCGAAACAACAATCACACCAACCTTCCTCTTACCAGATAAAAAGGGTAGCTGAAAAGTAC 60 consensus_5819#1 ---------------------GCTCCGGAAAATCAAACAAAAAGGACAGCTGAAAAGTAC 39 consensus_5819#2 --------------------------------------AAAAGAAAAAACTAAAAGCTGC 22 **** * ** *** * * consensus_5819#0 GTGATTCAATTTGTGGAACTAAAACTAGTGAAAAAAA--TAGTGTTCTTTGTGCGTGAGT 118 consensus_5819#1 GCGATTGAATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGTGT--GT 97 consensus_5819#2 G-----GAATTCCTCGAGC----ACTGTTGGCCTACTG-GAGTTTTCCTTCTGGGCC-GT 71 * **** * ** * *** ** * *** *** ** ** * ** consensus_5819#0 GTGTGTGTGGAAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAAGAAACAACCC 178 consensus_5819#1 GTGTGTGTGGGAGTTAATTCCTGTTAGTGCCCTCAACA-----AAAAAAAGAAACAACCC 152 consensus_5819#2 TTGGCTATCCGGATTTGTGCGTTTGAGAG-----AAAAG----AAAGAAAAAAAAAACGC 122 ** * * * * * * * ** * ** * *** *** *** *** * consensus_5819#0 CCAAAATGCCAACCTTGCTGGA-GGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAG 237 consensus_5819#1 CCAAAATGCCAACCTTGCTGGA-GGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAG 211 consensus_5819#2 ACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAA 182 * ** * * * * * ** ** * ** * * * ** *** * consensus_5819#0 AAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCG 297 consensus_5819#1 AAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCG 271 consensus_5819#2 AAGGA----CAGCTGAA-----AAGTACGCGATTCGATTTGTGGAACTAAA--ACTAGTG 231 ***** ** ** * **** * * ***** * ** * ** * * consensus_5819#0 AGACAAAGCACACCACAGCTACTTATACTAAACGATTGCAATATCGATCGGGCCGGTGAG 357 consensus_5819#1 AGACAAAGCACACCACAGCTACTTATACTGAACGATTGCAATATCGATCGGGCCGGCGAG 331 consensus_5819#2 AAAAAAAG-ATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCC 290 * * **** * * * * * * ** * ** * * * consensus_5819#0 CCGGAAGATTTGAAGAAA-AAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAA 416 consensus_5819#1 CCGGAAGATTTGAGGAAA-AAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAA 390 consensus_5819#2 CTCAAAAACAAAAAAAAAGAAAGGCCACAT-GTGCTCGAG--CGGTTTGTTTTT------ 341 * ** * * *** ** * * *** *** ** ** ** consensus_5819#0 GCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGT 476 consensus_5819#1 GCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGT 450 consensus_5819#2 ------------------------------------------------------------ consensus_5819#0 GAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGA 536 consensus_5819#1 GAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGA 510 consensus_5819#2 ------------------------------------------------------------ consensus_5819#0 CCATCTGCGCAATCTGGTGCTGAACAACACCAAGCTGGAATGGTGCAGCGTGGAGAAGCT 596 consensus_5819#1 CCATCTGCGCAATCTGG------------------------------------------- 527 consensus_5819#2 ------------------------------------------------------------ consensus_5819#0 GTTGCGCTTGCTGCCCGCCCTCGAGGAGCTGCATCTTAGCCTGAACGAGTATACGCATGT 656 consensus_5819#1 ------------------------------------------------------------ consensus_5819#2 ------------------------------------------------------------ consensus_5819#0 GCTGATCGACACG 669 consensus_5819#1 ------------- consensus_5819#2 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||