cluster # 5826

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Anopheles gambiae
cluster # 5826 cluster # 5826 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5826#0 length = 962 sequences # 2

consensus_5826#1 length = 837 sequences # 2

consensusID : consensus_5826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 962
fasta sequence

                              [CCGCAGAAGGGTGCGAAGCTCAAAAAGACGGTTACGGTCGACAAGAGCGCACCGGCCATTCAGGGCAAGGTTACTTCCGATGGAGGAGCGACGCGGGCGAACAATCGGGCACCTGGCCGGCCAACCGGCGACGATGGTGCGCCGGCGGCAGCAGGGCCGACAAACGGCGGTGGACAGCCGAAGCTGGGCGGCCTGTTCGAGGGGCTGTCATCGATGCCGAAATTGAAACCGGTCGGCAGCAGAACGGGAGCTGGCACAGGAAACGCACCTTCGGCAGCATCTGGGTATCAGCAGAACAAAACGCCCTCCCCGGACGCCTCGAAAGGGTCGCCGATTAACAATGGGCGGCTGGGGAATGGTGGCGGTTCCGCCGCCGCCCCGCTAGACTTCTCCGACGAGCTCGCGCAAAAGTTAACGCTCAAAAAACAGAAACAGCAGGGGAGCATCATCAGCAGCAGCAGCAGTAGTGGTAGCGTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAACCGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCGTCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCCAACCACCTGAAGCTGGCCGGATCGAAACCATCGTCAGCCACGAAGGACACATCTCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAA]

[+] EMBL BM613650             [CCGCAGAAGGGTGCGAAGCTCAAAAAGACGGTTACGGTCGACAAGAGCGCACCGGCCATTCAGGGCAAGGTTACTTCCGATGGAGGAGCGACGCGGGCGAACAATCGGGCACCTGGCCGGCCAACCGGCGACGATGGTGCGCCGGCGGCAGCAGGGCCGACAAACGGCGGTGGACAGCCGAAGCTGGGCGGCCTGTTCGAGGGGCTGTCATCGATGCCGAAATTGAAACCGGTCGGCAGCAGAACGGGAGCTGGCACAGGAAACGCACCTTCGGCAGCATCTGGGTATCAGCAGAACAAAACGCCCTCCCCGGACGCCTCGAAAGGGTCGCCGATTAACAATGGGCGGCTGGGGAATGGTGGCGGTTCCGCCGCCGCCCCGCTAGACTTCTCCGACGAGCTCGCGCAAAAGTTAACGCTCAAAAAACAGAAACAGCAGGGGAGCATCATCAGCAGCAGCAGCAGTAGTGGTAGCGTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAACCGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCGTCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCCAAC                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX603571             [                                                                                                                                                                                                                                                                                                                                                                                                                           cgAACGCTCAAAAAACAGAAACAGCAGGGTAG   CATCAGCAACAACAGTAGTAGTGGTAGCGTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAACCGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCGTCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCCAACCACCTGAAGCTGGCCGGATCGAAACCATCGTCAGCCACGAAGGACACATCTCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAA]




>consensus_5826#0
CCGCAGAAGGGTGCGAAGCTCAAAAAGACGGTTACGGTCGACAAGAGCGCACCGGCCATT
CAGGGCAAGGTTACTTCCGATGGAGGAGCGACGCGGGCGAACAATCGGGCACCTGGCCGG
CCAACCGGCGACGATGGTGCGCCGGCGGCAGCAGGGCCGACAAACGGCGGTGGACAGCCG
AAGCTGGGCGGCCTGTTCGAGGGGCTGTCATCGATGCCGAAATTGAAACCGGTCGGCAGC
AGAACGGGAGCTGGCACAGGAAACGCACCTTCGGCAGCATCTGGGTATCAGCAGAACAAA
ACGCCCTCCCCGGACGCCTCGAAAGGGTCGCCGATTAACAATGGGCGGCTGGGGAATGGT
GGCGGTTCCGCCGCCGCCCCGCTAGACTTCTCCGACGAGCTCGCGCAAAAGTTAACGCTC
AAAAAACAGAAACAGCAGGGGAGCATCATCAGCAGCAGCAGCAGTAGTGGTAGCGTACCT
CCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAACCGAGGA
CCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCGTCAAAG
ACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCCAACCAC
CTGAAGCTGGCCGGATCGAAACCATCGTCAGCCACGAAGGACACATCTCTAACGTCGGTC
AGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTG
GAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTC
CTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAA
GGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGG
AA

consensusID : consensus_5826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 837
fasta sequence

                              [CCGCGAAAGGTGGCAGCTTGAAAACGACTGCCGCCCCGCCGCTACCACCGCATCGGACCAGCCCCGCACCACCTCCACCAGTTCCGGCGTCGACGCTGAACTCGGGTGAAGCGCCCGTACCACCACAACGCATTTCGTCGATCCGCAATTCGGCCGGTAGCGGCGGCAGCTTACCAGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGAGTCATCATAGTCAAAGCAGCACCGTCATTATCACGAGCACCTCCACATCAGCTGGTGGTGGTGGCGGCAGTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAAACGATCCAACCTAAAAGCGGGATGACGGATGTTGAACGATTGCCTGATGCTACCAAACAGCGCAGAACTGCATATCCGGTTGCAAAAACAGTATTTACGCGCAGACGAACGTCACGATGCACATTAGCATTCAGATGCACCCGTAACACACACACGCATGTGGCTGTTGAACATCAATGCGAAGAAGAGAAACAAATCGACACGTGATTATTAAGCTCAATTATTACGTTTGTAGTAGTACATTGCCGATTGATCGATCGAGC]

[+] EMBL BM615809             [CCGCGAAAGGTGGCAGCTTGAAAACGACTGCCGCCCCGCCGCTACCACCGCATCGGACCAGCCCCGCACCACCTCCACCAGTTCCGGCGTCGACGCTGAACTCGGGTGAAGCGCCCGTACCACCACAACGCATTTCGTCGATCCGCAATTCGGCCGGTAGCGGCGGCAGCTTACCAGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGAGTCATCATAGTCAAAGCAGCACCGTCATTATCACGAGCACCTCCACATCAGCTGGTGGTGGTGGCGGCAGTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAAACGATCCAACCTAAAAGCGGGATGACGGATGTTGAACGATTGCCTGATGCTACCAAACAGCGCAGAACTGCATATCCGGTTGCAAAAACAGTATTTACGCGCAGACGAACGTCACGA                                                                                                                                                  ]
[+] EMBL BM655740             [                                                                                                                                                              ccgGGCGGCAGCTTACCAGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGAGTCATCATAGTCAAAGCAGCACCGTCATTATCACGAGCACCTCCACATCAGCTGGTGGTGGTGGCGGCAGTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAAACGATCCAACCTAAAAGCGGGATGACGGATGTTGAACGATTGCCTGATGCTACCAAACAGCGCAGAACTGCATATCCGGTTGCAAAAACAGTATTTACGCGCAGACGAACGTCACGATGCACATTAGCATTCAGATGCACCCGTAACACACACACGCATGTGGCTGTTGAACATCAATGCGAAGAAGAGAAACAAATCGACACGTGATTATTAAGCTCAATTATTACGTTTGTAGTAGTACATTGCCGATTGATCGATCGAGC]




>consensus_5826#1
CCGCGAAAGGTGGCAGCTTGAAAACGACTGCCGCCCCGCCGCTACCACCGCATCGGACCA
GCCCCGCACCACCTCCACCAGTTCCGGCGTCGACGCTGAACTCGGGTGAAGCGCCCGTAC
CACCACAACGCATTTCGTCGATCCGCAATTCGGCCGGTAGCGGCGGCAGCTTACCAGCGG
TACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGAGTCATCATAGTC
AAAGCAGCACCGTCATTATCACGAGCACCTCCACATCAGCTGGTGGTGGTGGCGGCAGTT
TGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCA
GCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACA
AGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCG
AACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATC
GGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAAACGATCCAACCTAAAAGCGGGATGAC
GGATGTTGAACGATTGCCTGATGCTACCAAACAGCGCAGAACTGCATATCCGGTTGCAAA
AACAGTATTTACGCGCAGACGAACGTCACGATGCACATTAGCATTCAGATGCACCCGTAA
CACACACACGCATGTGGCTGTTGAACATCAATGCGAAGAAGAGAAACAAATCGACACGTG
ATTATTAAGCTCAATTATTACGTTTGTAGTAGTACATTGCCGATTGATCGATCGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5826#0      CCGCAGAAGGGTGCGAAGCTCAAAAAGACGGTTACG--GTCGACAAGAGCGCACCGGCCA 58
consensus_5826#1      CCGC-GAAAGGTGGCAGCTTGAAAACGACTGCCGCCCCGCCGCTACCACCGCATCGGAC- 58
                      **** *** ****  *   * **** *** *   *   * **  *  * **** *** * 

consensus_5826#0      TTCAGGGCAAGGTTACTTCCGATGGAGGAGCGACGCGGGCGAACAA-TCGGGCACCTGGC 117
consensus_5826#1      --CAGCCCCGCACCACCTCCACC--AGTTCCGGCGTCGACGCTGAACTCGGGTGAAGCGC 114
                        ***  *      ** ***     **   ** **  * **   ** *****      **

consensus_5826#0      CGGCCAACCGGCGACGATGGTGCGCCGG-CGGCAGCAGGGCCGACAAACGGCGGTGGACA 176
consensus_5826#1      CCGTACCACCACAACG-CATTTCGTCGATCCGCAATTCGGCCGGTAG-CGGCGGCAGCTT 172
                      * *     *  * ***    * ** **  * ***    *****  *  ******  *   

consensus_5826#0      GCCGAAGCTGGGCGGCCTGTTCGAGGGGCTGTCATCGAT-GCCGAAATTGAAACCGGTCG 235
consensus_5826#1      ACC--AGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGA-G 229
                       **  *** *  *   ****  *  * *    ** *    ** * * *   ** * *  *

consensus_5826#0      GCAGCAGAACGGGAGCTGGCACAGGAAACGCACCTTCGGCAGCATCTGGGTATCAGCAGA 295
consensus_5826#1      TCATCATAGTCAAAGC-AGCACCGT-----CATTATCACGAGCACCTCCACATCAGCTGG 283
                       ** ** *     ***  **** *      **   **   **** **    ****** * 

consensus_5826#0      ACAAAACGCCCTCCCCGGACGCCTCGAAAGGGTCGCCGATTAACAATGGGCGGCTGGGGA 355
consensus_5826#1      TGGTGGTGGCGGCA--GTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGT 341
                             * *  *   *   **  ** ****         ****   ** * ** *  * 

consensus_5826#0      ATGGTGGCGGTTCCGCCGCCGCCCCGCTAGACTTCTCCGAC-GAGCTCGCGCAAAAGTTA 414
consensus_5826#1      TCGTCGGCGG---CGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCG 398
                        *  *****   ** ** *   * *  ***   * * * * *** ***  *   **   

consensus_5826#0      ACGCTCAAAAAACAGAAACAGCAGGGGAGCATCATCAGCAGCAGCAGCAGTAGTGGTAGC 474
consensus_5826#1      AAGTACGCGTTCTACTTCCACAAGGTGACCG-----AGTTTCCGCAGC-----CGATACC 448
                      * *  *       *    **  *** ** *      **   * *****      * ** *

consensus_5826#0      GTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAAC 534
consensus_5826#1      GTTCCT--------GAATGTGCCCAAAATCT-----ATCAAAGCGAAC-TGCGGCAGCAG 494
                      ** ***        ***    ***  ** *      * * ******** **** * * * 

consensus_5826#0      CGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCG 594
consensus_5826#1      CAGCAGCAGCAGCAGCAA-----GGTGTCGGAC-AACCGCCACC----GCCCCATCGGCA 544
                      *     *  *  * ****         ***  * *** **** *    * *   ***** 

consensus_5826#0      TCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCC 654
consensus_5826#1      GTAAAATTCGC----------CCTCCGGTCACTGAGGGAAACGATCCAACC-TAAAAGCG 593
                        ***   ***          **  *   ** * **  ** * *  ** *   ** * * 

consensus_5826#0      AACCACCTGAAGCTGGCCGGATCGAAACCATCGTCAGCCACGAAGGACACATCTCTAACG 714
consensus_5826#1      GGATGACGGATGTTGAACGATT---GCCTGATGCTA-CCAAACAGCGCAGAACTGCATAT 649
                            * ** * **  **  *     *    *  * ***   **  ** * **  *   

consensus_5826#0      TCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATC 774
consensus_5826#1      CCGGTTGCAAAAACAGTATTTACG-CGCAGACGAACGTCACGATGCACAT---TAGCATT 705
                       ****    *  *     *   ** **  *** * *   * ***** * *       ** 

consensus_5826#0      GACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATA 834
consensus_5826#1      CAGATGCACCCGTAACACAC-----ACACGCATGTGGCTGTTGAACATCAAT-GCGAAGA 759
                       *  ** *  ** *  ** *     **   **   **     **   **    **  * *

consensus_5826#0      CCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAG 894
consensus_5826#1      AGAGAAACAAATCGACACGTGAT-TATTAAGCTCAATTATTACGTTTGTAGTAGTA-CAT 817
                               ***   * *   ** *** **    ** *    *    * ** ** * ** 

consensus_5826#0      CAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCAC 954
consensus_5826#1      TGCCGATTGATCGATCGAGC---------------------------------------- 837
                         * *    ***  * * *                                        

consensus_5826#0      TGAGGGAA 962
consensus_5826#1      --------