cluster # 5840

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Anopheles gambiae
cluster # 5840 cluster # 5840 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5840#0 length = 1031 sequences # 2

consensus_5840#1 length = 545 sequences # 1
consensus_5840#2 length = 522 sequences # 1

consensusID : consensus_5840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1031
fasta sequence

                              [CATCAGCCTTGATCTTTCTTACAACCATGCCTGTTTCCTCTCGGTTCCTGACACTTGTCAATCCATTCCCCCCAACAAAGAAGCATAATATGATAATATATCTTTGATGGCCTTTACGCGTGTATAACGAACGGTAACAAAATTGGAAAGAGGTTAAGACAACTCTACACCTATTCTGCAAAATTAATTATACAAACACATGAGTGAAATATTGGTCCCATTTCGAGTAGGCTATCTACTTTTCTGATTTCAGAAAAATGGTGTCTCTAAACAAATTCATGGCTTCCGAACTGTTTACTGTATTGCACAAACACTTCTCCGATTTGCTTTTTTGATGCAACTTTTATACACTTATTTTTCTCCTTTTGTTTGGAGCATCGGAATTCTGAAATTTGTTTACCAGAATGATCTTTTGATAAAGAATTAATTACAC-TTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATCTTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGAGAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAATGCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGAAACAACATCATAATTATCATGATCAAAATAACCACTGCTCTGACCTACATCACAGTTCTCGCAGAGTTTGCATAAACCAGTCCACTCACAAGGATACATCATGAACCCAATAGGACTAAATATTTGAAAACCTTGAATCGTATTCATTCGGACACGGTTTAGAAAATCAGGACGAAATGATGCAGAATTGGTGCAAACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGAAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCCGG]

[+] EMBL CNS08XEQ             [CATCAGCCTTGATCTTTCTTACAACCATGCCTGTTTCCTCTCGGTTCCTGACACTTGTCAATCCATTCCCCCCAACAAAGAAGCATAATATGATAATATATCTTTGATGGCCTTTACGCGTGTATAACGAACGGTAACAAAATTGGAAAGAGGTTAAGACAACTCTACACCTATTCTGCAAAATTAATTATACAAACACATGAGTGAAATATTGGTCCCATTTCGAGTAGGCTATCTACTTTTCTGATTTCAGAAAAATGGTGTCTCTAAACAAATTCATGGCTTCCGAACTGTTTACTGTATTGCACAAACACTTCTCCGATTTGCTTTTTTGATGCAACTTTTATACACTTATTTTTCTCCTTTTGTTTGGAGCATCGGAATTCTGAAATTTGTTTACCAGAATGATCTTTTGATAAAGAATTAATTACAC TTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATCTTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGAGAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAATGCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGA                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BM616414             [                                                                                                                                                                                                                                                                                                                                                                                                                      GATCTTTTGATAAAGAATTAATTACACTTTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATCTTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGAGAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAATGCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGAAACAACATCATAATTATCATGATCAAAATAACCACTGCTCTGACCTACATCACAGTTCTCGCAGAGTTTGCATAAACCAGTCCACTCACAAGGATACATCATGAACCCAATAGGACTAAATATTTGAAAACCTTGAATCGTATTCATTCGGACACGGTTTAGAAAATCAGGACGAAATGATGCAGAATTGGTGCAAACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGAAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCCGG]




>consensus_5840#0
CATCAGCCTTGATCTTTCTTACAACCATGCCTGTTTCCTCTCGGTTCCTGACACTTGTCA
ATCCATTCCCCCCAACAAAGAAGCATAATATGATAATATATCTTTGATGGCCTTTACGCG
TGTATAACGAACGGTAACAAAATTGGAAAGAGGTTAAGACAACTCTACACCTATTCTGCA
AAATTAATTATACAAACACATGAGTGAAATATTGGTCCCATTTCGAGTAGGCTATCTACT
TTTCTGATTTCAGAAAAATGGTGTCTCTAAACAAATTCATGGCTTCCGAACTGTTTACTG
TATTGCACAAACACTTCTCCGATTTGCTTTTTTGATGCAACTTTTATACACTTATTTTTC
TCCTTTTGTTTGGAGCATCGGAATTCTGAAATTTGTTTACCAGAATGATCTTTTGATAAA
GAATTAATTACACTTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATC
TTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGA
GAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAAT
GCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGAAACAACATCATAA
TTATCATGATCAAAATAACCACTGCTCTGACCTACATCACAGTTCTCGCAGAGTTTGCAT
AAACCAGTCCACTCACAAGGATACATCATGAACCCAATAGGACTAAATATTTGAAAACCT
TGAATCGTATTCATTCGGACACGGTTTAGAAAATCAGGACGAAATGATGCAGAATTGGTG
CAAACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAA
TTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGAAACGATTGCTATTGTTGAATGTA
ATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTA
TGTTTCTCCGG

consensusID : consensus_5840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [CAATCGAACCCCCCAGAATCACGACACGACGTTGTTCCATGGGTAACTCTCAATACAACGCACTCATTTATGTGGCAATCTGAAGTGAACGTAAAGCGTCTATCAGCAATCGATGAGGAAGACATCCGTAATGTGTTGAATAAAACTATTTTACATGCTATTCGAACCCATCCGGATGCAGAGTTTCGAGGAATACACATAGCTTACAAACGTTTTGATACCGTGCGAGGGATGGATTATCGGCTATTGCTTAATTTCTATGACAGAAAACGTAGGACAATGGTGCAAAAGAGTTTTGAAGTGATTAAACCTATTAGCTTGATAGAAATAATCCCATCCCCATATGTGACTGAAAGTACTCGTGTAGCTTTACTTTTACCCGTATTTGAGAGTCAAATCCTAGAAGCGGAGCAGTTTATGGAACTCTACGAAAAAACTTGCATGGAAAGCCAGGATAATACTTTTCTCATGCTCATATTCTTTTATCGTGCGGAAACCCCTAGTAAAGGAGATCAAGATGTATTTCTTCCTCTAAAAAATATTGC]

[+] EMBL CNS08XEP             [CAATCGAACCCCCCAGAATCACGACACGACGTTGTTCCATGGGTAACTCTCAATACAACGCACTCATTTATGTGGCAATCTGAAGTGAACGTAAAGCGTCTATCAGCAATCGATGAGGAAGACATCCGTAATGTGTTGAATAAAACTATTTTACATGCTATTCGAACCCATCCGGATGCAGAGTTTCGAGGAATACACATAGCTTACAAACGTTTTGATACCGTGCGAGGGATGGATTATCGGCTATTGCTTAATTTCTATGACAGAAAACGTAGGACAATGGTGCAAAAGAGTTTTGAAGTGATTAAACCTATTAGCTTGATAGAAATAATCCCATCCCCATATGTGACTGAAAGTACTCGTGTAGCTTTACTTTTACCCGTATTTGAGAGTCAAATCCTAGAAGCGGAGCAGTTTATGGAACTCTACGAAAAAACTTGCATGGAAAGCCAGGATAATACTTTTCTCATGCTCATATTCTTTTATCGTGCGGAAACCCCTAGTAAAGGAGATCAAGATGTATTTCTTCCTCTAAAAAATATTGC]




>consensus_5840#1
CAATCGAACCCCCCAGAATCACGACACGACGTTGTTCCATGGGTAACTCTCAATACAACG
CACTCATTTATGTGGCAATCTGAAGTGAACGTAAAGCGTCTATCAGCAATCGATGAGGAA
GACATCCGTAATGTGTTGAATAAAACTATTTTACATGCTATTCGAACCCATCCGGATGCA
GAGTTTCGAGGAATACACATAGCTTACAAACGTTTTGATACCGTGCGAGGGATGGATTAT
CGGCTATTGCTTAATTTCTATGACAGAAAACGTAGGACAATGGTGCAAAAGAGTTTTGAA
GTGATTAAACCTATTAGCTTGATAGAAATAATCCCATCCCCATATGTGACTGAAAGTACT
CGTGTAGCTTTACTTTTACCCGTATTTGAGAGTCAAATCCTAGAAGCGGAGCAGTTTATG
GAACTCTACGAAAAAACTTGCATGGAAAGCCAGGATAATACTTTTCTCATGCTCATATTC
TTTTATCGTGCGGAAACCCCTAGTAAAGGAGATCAAGATGTATTTCTTCCTCTAAAAAAT
ATTGC

consensusID : consensus_5840#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [GAATNACACCGACCTTGCCTCCTGACNTACTATCACAGTTTCTCGCAGAGTTTGCATANTATACCAGTCCACTCACAAAGGATACATCATGAACCCAATAGGACTAAATACTTTGNAAACCTTGAATCGTATTCATTCGGACACGGTTTAGANAAATCAGGACGAAATGATGCAGAATTGGTGCAANACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGTAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCTGTGAGGGCTAAAGCAATATTTTTTAGAGGAAGAAATACATCTTGATCTCCTTTACTAGGGGTTTCCGCACGATAAAAGAATATGAGCATGAGAAAAGTATTATCCTGGCTTTGCCATGCAAGTTTTTTCGCCTTGACCCCGAGTCTGGC]

[-] EMBL BX469019             [GAATNACACCGACCTTGCCTCCTGACNTACTATCACAGTTTCTCGCAGAGTTTGCATANTATACCAGTCCACTCACAAAGGATACATCATGAACCCAATAGGACTAAATACTTTGNAAACCTTGAATCGTATTCATTCGGACACGGTTTAGANAAATCAGGACGAAATGATGCAGAATTGGTGCAANACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGTAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCTGTGAGGGCTAAAGCAATATTTTTTAGAGGAAGAAATACATCTTGATCTCCTTTACTAGGGGTTTCCGCACGATAAAAGAATATGAGCATGAGAAAAGTATTATCCTGGCTTTGCCATGCAAGTTTTTTCGCCTTGACCCCGAGTCTGGC]




>consensus_5840#2
GAATNACACCGACCTTGCCTCCTGACNTACTATCACAGTTTCTCGCAGAGTTTGCATANT
ATACCAGTCCACTCACAAAGGATACATCATGAACCCAATAGGACTAAATACTTTGNAAAC
CTTGAATCGTATTCATTCGGACACGGTTTAGANAAATCAGGACGAAATGATGCAGAATTG
GTGCAANACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGAC
AAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGTAACGATTGCTATTGTTGAA
TGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTG
TTTATGTTTCTCTGTGAGGGCTAAAGCAATATTTTTTAGAGGAAGAAATACATCTTGATC
TCCTTTACTAGGGGTTTCCGCACGATAAAAGAATATGAGCATGAGAAAAGTATTATCCTG
GCTTTGCCATGCAAGTTTTTTCGCCTTGACCCCGAGTCTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5840#0      CATCAGCCTTGATCTTTCTTACAACCATGCCTGTTTCCTCTCGGTTCCTGACACTTGTCA 60
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      ATCCATTCCCCCCAACAAAGAAGCATAATATGATAATATATCTTTGATGGCCTTTACGCG 120
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      TGTATAACGAACGGTAACAAAATTGGAAAGAGGTTAAGACAACTCTACACCTATTCTGCA 180
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      AAATTAATTATACAAACACATGAGTGAAATATTGGTCCCATTTCGAGTAGGCTATCTACT 240
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      TTTCTGATTTCAGAAAAATGGTGTCTCTAAACAAATTCATGGCTTCCGAACTGTTTACTG 300
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      TATTGCACAAACACTTCTCCGATTTGCTTTTTTGATGCAACTTTTATACACTTATTTTTC 360
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      TCCTTTTGTTTGGAGCATCGGAATTCTGAAATTTGTTTACCAGAATGATCTTTTGATAAA 420
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      GAATTAATTACACTTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATC 480
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      TTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGA 540
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      GAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAAT 600
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      GCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGAAACAACATCATAA 660
consensus_5840#2      ------------------------------------------------------------
consensus_5840#1      ---------------------------------------------------CAATCGAAC 9
                                                                                  

consensus_5840#0      TTATCATGATCAAAAT--AACCACTGCTC-TGACCTAC-ATCACAGTT-CTCGCAGAGTT 715
consensus_5840#2      ------GAATNACACC--GACCTTGCCTCCTGACNTACTATCACAGTTTCTCGCAGAGTT 52
consensus_5840#1      CCCCCAGAATCACGACACGACGTTGTTCCATGGGTAACTCTCAATACAACGCACTCA-TT 68
                              ** *       **       * **    **  ***      * * *  * **

consensus_5840#0      TGCATAA---ACCAGTCCACTCACAA-GGATACATCATGAACCCAATAGGACTAAATA-T 770
consensus_5840#2      TGCATANTATACCAGTCCACTCACAAAGGATACATCATGAACCCAATAGGACTAAATACT 112
consensus_5840#1      TATGTGGCAATCTGAAGTGAACGTAAAGCGTCTATCAGCAATCGATGAGGA--AGACATC 126
                      *   *      *         *  ** *  *  ****  ** * *  ****  * * *  

consensus_5840#0      TTGAAAACCTTGAATCGTATTCATTCGGACACGGTTTAGAAAA-TCAGGACGAAATGATG 829
consensus_5840#2      TTGNAAACCTTGAATCGTATTCATTCGGACACGGTTTAGANAAATCAGGACGAAATGATG 172
consensus_5840#1      CGTAATGTGTTGAATAAAACTATTTTACATGCTATTCGAACCCATCCGGATGCAGAGTTT 186
                          *    ******   * *  **   *  *  **   *    ** *** * *  * * 

consensus_5840#0      CAGAATTGGTGCAAA-CAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCA 888
consensus_5840#2      CAGAATTGGTGCAANACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCA 232
consensus_5840#1      CGAGG--AATACACA-TAGCTTACAAACGTTTTGATACCGTGCGA-GGGATGGATTATCG 242
                      *        * **    *     ***** **   ** *  *   * *    *    *** 

consensus_5840#0      ACAGCGACAAAATTCATA----AGCGTTTGTGGAACATTG-----AGTGAGCTC--GAGA 937
consensus_5840#2      ACAGCGACAAAATTCATA----AGCGTTTGTGGAACATTG-----AGTGAGCTC--GAGT 281
consensus_5840#1      GCTATTGCTTAATTTCTATGACAGAAAACGTAGGACAATGGTGCAAAAGAGTTTTGAAGT 302
                       *     *  ****  **    **     ** * *** **     *  *** *    ** 

consensus_5840#0      AACGATTGCTATTG--TTGAATGTAATACTTTCATCT--ATTGGCAAACGGATTGATACC 993
consensus_5840#2      AACGATTGCTATTG--TTGAATGTAATACTTTCATCT--ATTGGCAAACGGATTGATACC 337
consensus_5840#1      GATTAAACCTATTAGCTTGATAGAAATAATCCCATCCCCATATGTGACTGAA--AGTACT 360
                       *  *   *****   ****  * **** *  ****   **  *  *  * *    *** 

consensus_5840#0      CATGCAACCCTTGATCCATCC-TGTTTATGTTTC---TCCGG------------------ 1031
consensus_5840#2      CATGCAACCCTTGATCCATCC-TGTTTATGTTTC---TCTGTGAGGGCTAAAGCAATATT 393
consensus_5840#1      CGTGTAGCTTTACTTTTACCCGTATTTGAGAGTCAAATCCTAGAAGCGGAGCAGTTTATG 420
                      * ** * *  *   *  * ** * ***  *  **   **                     

consensus_5840#0      ------------------------------------------------------------
consensus_5840#2      TTTTAGAGGAAGAAATACATCTTGATCTCCTTTACTAGGGGTTTCCGCACGATAAAAGAA 453
consensus_5840#1      GAACTCTACGAAAAAACTTGCATGGAAAGCCAGGATAATACTTTTCTCATGCTCATATTC 480
                                                                                  

consensus_5840#0      ------------------------------------------------------------
consensus_5840#2      TATGAGCATGAGAAAAGTATTATCCTGGCTTTGCCATGCAAGTTTTTTCGCCTTGACCCC 513
consensus_5840#1      TTTTATCGTGCGGAAACCCCTAGTAAAGGAGATCAAGATGTATTTCTTCCTCTAAAAAAT 540
                                                                                  

consensus_5840#0      ---------
consensus_5840#2      GAGTCTGGC 522
consensus_5840#1      ATTGC---- 545