These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1031 fasta sequence [CATCAGCCTTGATCTTTCTTACAACCATGCCTGTTTCCTCTCGGTTCCTGACACTTGTCAATCCATTCCCCCCAACAAAGAAGCATAATATGATAATATATCTTTGATGGCCTTTACGCGTGTATAACGAACGGTAACAAAATTGGAAAGAGGTTAAGACAACTCTACACCTATTCTGCAAAATTAATTATACAAACACATGAGTGAAATATTGGTCCCATTTCGAGTAGGCTATCTACTTTTCTGATTTCAGAAAAATGGTGTCTCTAAACAAATTCATGGCTTCCGAACTGTTTACTGTATTGCACAAACACTTCTCCGATTTGCTTTTTTGATGCAACTTTTATACACTTATTTTTCTCCTTTTGTTTGGAGCATCGGAATTCTGAAATTTGTTTACCAGAATGATCTTTTGATAAAGAATTAATTACAC-TTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATCTTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGAGAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAATGCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGAAACAACATCATAATTATCATGATCAAAATAACCACTGCTCTGACCTACATCACAGTTCTCGCAGAGTTTGCATAAACCAGTCCACTCACAAGGATACATCATGAACCCAATAGGACTAAATATTTGAAAACCTTGAATCGTATTCATTCGGACACGGTTTAGAAAATCAGGACGAAATGATGCAGAATTGGTGCAAACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGAAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCCGG] [+] EMBL CNS08XEQ [CATCAGCCTTGATCTTTCTTACAACCATGCCTGTTTCCTCTCGGTTCCTGACACTTGTCAATCCATTCCCCCCAACAAAGAAGCATAATATGATAATATATCTTTGATGGCCTTTACGCGTGTATAACGAACGGTAACAAAATTGGAAAGAGGTTAAGACAACTCTACACCTATTCTGCAAAATTAATTATACAAACACATGAGTGAAATATTGGTCCCATTTCGAGTAGGCTATCTACTTTTCTGATTTCAGAAAAATGGTGTCTCTAAACAAATTCATGGCTTCCGAACTGTTTACTGTATTGCACAAACACTTCTCCGATTTGCTTTTTTGATGCAACTTTTATACACTTATTTTTCTCCTTTTGTTTGGAGCATCGGAATTCTGAAATTTGTTTACCAGAATGATCTTTTGATAAAGAATTAATTACAC TTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATCTTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGAGAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAATGCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGA ] [-] EMBL BM616414 [ GATCTTTTGATAAAGAATTAATTACACTTTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATCTTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGAGAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAATGCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGAAACAACATCATAATTATCATGATCAAAATAACCACTGCTCTGACCTACATCACAGTTCTCGCAGAGTTTGCATAAACCAGTCCACTCACAAGGATACATCATGAACCCAATAGGACTAAATATTTGAAAACCTTGAATCGTATTCATTCGGACACGGTTTAGAAAATCAGGACGAAATGATGCAGAATTGGTGCAAACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGAAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCCGG] consensusID : consensus_5840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [CAATCGAACCCCCCAGAATCACGACACGACGTTGTTCCATGGGTAACTCTCAATACAACGCACTCATTTATGTGGCAATCTGAAGTGAACGTAAAGCGTCTATCAGCAATCGATGAGGAAGACATCCGTAATGTGTTGAATAAAACTATTTTACATGCTATTCGAACCCATCCGGATGCAGAGTTTCGAGGAATACACATAGCTTACAAACGTTTTGATACCGTGCGAGGGATGGATTATCGGCTATTGCTTAATTTCTATGACAGAAAACGTAGGACAATGGTGCAAAAGAGTTTTGAAGTGATTAAACCTATTAGCTTGATAGAAATAATCCCATCCCCATATGTGACTGAAAGTACTCGTGTAGCTTTACTTTTACCCGTATTTGAGAGTCAAATCCTAGAAGCGGAGCAGTTTATGGAACTCTACGAAAAAACTTGCATGGAAAGCCAGGATAATACTTTTCTCATGCTCATATTCTTTTATCGTGCGGAAACCCCTAGTAAAGGAGATCAAGATGTATTTCTTCCTCTAAAAAATATTGC] [+] EMBL CNS08XEP [CAATCGAACCCCCCAGAATCACGACACGACGTTGTTCCATGGGTAACTCTCAATACAACGCACTCATTTATGTGGCAATCTGAAGTGAACGTAAAGCGTCTATCAGCAATCGATGAGGAAGACATCCGTAATGTGTTGAATAAAACTATTTTACATGCTATTCGAACCCATCCGGATGCAGAGTTTCGAGGAATACACATAGCTTACAAACGTTTTGATACCGTGCGAGGGATGGATTATCGGCTATTGCTTAATTTCTATGACAGAAAACGTAGGACAATGGTGCAAAAGAGTTTTGAAGTGATTAAACCTATTAGCTTGATAGAAATAATCCCATCCCCATATGTGACTGAAAGTACTCGTGTAGCTTTACTTTTACCCGTATTTGAGAGTCAAATCCTAGAAGCGGAGCAGTTTATGGAACTCTACGAAAAAACTTGCATGGAAAGCCAGGATAATACTTTTCTCATGCTCATATTCTTTTATCGTGCGGAAACCCCTAGTAAAGGAGATCAAGATGTATTTCTTCCTCTAAAAAATATTGC] consensusID : consensus_5840#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GAATNACACCGACCTTGCCTCCTGACNTACTATCACAGTTTCTCGCAGAGTTTGCATANTATACCAGTCCACTCACAAAGGATACATCATGAACCCAATAGGACTAAATACTTTGNAAACCTTGAATCGTATTCATTCGGACACGGTTTAGANAAATCAGGACGAAATGATGCAGAATTGGTGCAANACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGTAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCTGTGAGGGCTAAAGCAATATTTTTTAGAGGAAGAAATACATCTTGATCTCCTTTACTAGGGGTTTCCGCACGATAAAAGAATATGAGCATGAGAAAAGTATTATCCTGGCTTTGCCATGCAAGTTTTTTCGCCTTGACCCCGAGTCTGGC] [-] EMBL BX469019 [GAATNACACCGACCTTGCCTCCTGACNTACTATCACAGTTTCTCGCAGAGTTTGCATANTATACCAGTCCACTCACAAAGGATACATCATGAACCCAATAGGACTAAATACTTTGNAAACCTTGAATCGTATTCATTCGGACACGGTTTAGANAAATCAGGACGAAATGATGCAGAATTGGTGCAANACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCAACAGCGACAAAATTCATAAGCGTTTGTGGAACATTGAGTGAGCTCGAGTAACGATTGCTATTGTTGAATGTAATACTTTCATCTATTGGCAAACGGATTGATACCCATGCAACCCTTGATCCATCCTGTTTATGTTTCTCTGTGAGGGCTAAAGCAATATTTTTTAGAGGAAGAAATACATCTTGATCTCCTTTACTAGGGGTTTCCGCACGATAAAAGAATATGAGCATGAGAAAAGTATTATCCTGGCTTTGCCATGCAAGTTTTTTCGCCTTGACCCCGAGTCTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5840#0 CATCAGCCTTGATCTTTCTTACAACCATGCCTGTTTCCTCTCGGTTCCTGACACTTGTCA 60 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 ATCCATTCCCCCCAACAAAGAAGCATAATATGATAATATATCTTTGATGGCCTTTACGCG 120 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 TGTATAACGAACGGTAACAAAATTGGAAAGAGGTTAAGACAACTCTACACCTATTCTGCA 180 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 AAATTAATTATACAAACACATGAGTGAAATATTGGTCCCATTTCGAGTAGGCTATCTACT 240 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 TTTCTGATTTCAGAAAAATGGTGTCTCTAAACAAATTCATGGCTTCCGAACTGTTTACTG 300 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 TATTGCACAAACACTTCTCCGATTTGCTTTTTTGATGCAACTTTTATACACTTATTTTTC 360 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 TCCTTTTGTTTGGAGCATCGGAATTCTGAAATTTGTTTACCAGAATGATCTTTTGATAAA 420 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 GAATTAATTACACTTCGCCCAAAACGAAGATTTGGTTCAATAGCTCTTAAGACGTGCATC 480 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 TTATTGTTACTTTGAGTGAAAAGATCAACTATGTTTGAAATCGTAGGGTTGCTATAGTGA 540 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 GAAGAGATAGTTGAAATAAAATTTAGAATATCCTTATCATTTCGAACAATTGGGAGCAAT 600 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 GCTTCGAGTTTTTTACGAGCAAGTACGTAATCATTGCTGTAGAATGAAACAACATCATAA 660 consensus_5840#2 ------------------------------------------------------------ consensus_5840#1 ---------------------------------------------------CAATCGAAC 9 consensus_5840#0 TTATCATGATCAAAAT--AACCACTGCTC-TGACCTAC-ATCACAGTT-CTCGCAGAGTT 715 consensus_5840#2 ------GAATNACACC--GACCTTGCCTCCTGACNTACTATCACAGTTTCTCGCAGAGTT 52 consensus_5840#1 CCCCCAGAATCACGACACGACGTTGTTCCATGGGTAACTCTCAATACAACGCACTCA-TT 68 ** * ** * ** ** *** * * * * ** consensus_5840#0 TGCATAA---ACCAGTCCACTCACAA-GGATACATCATGAACCCAATAGGACTAAATA-T 770 consensus_5840#2 TGCATANTATACCAGTCCACTCACAAAGGATACATCATGAACCCAATAGGACTAAATACT 112 consensus_5840#1 TATGTGGCAATCTGAAGTGAACGTAAAGCGTCTATCAGCAATCGATGAGGA--AGACATC 126 * * * * ** * * **** ** * * **** * * * consensus_5840#0 TTGAAAACCTTGAATCGTATTCATTCGGACACGGTTTAGAAAA-TCAGGACGAAATGATG 829 consensus_5840#2 TTGNAAACCTTGAATCGTATTCATTCGGACACGGTTTAGANAAATCAGGACGAAATGATG 172 consensus_5840#1 CGTAATGTGTTGAATAAAACTATTTTACATGCTATTCGAACCCATCCGGATGCAGAGTTT 186 * ****** * * ** * * ** * ** *** * * * * consensus_5840#0 CAGAATTGGTGCAAA-CAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCA 888 consensus_5840#2 CAGAATTGGTGCAANACAATGACCAAACTTTCCAATCCAATCTTACGCAGCGCCAAATCA 232 consensus_5840#1 CGAGG--AATACACA-TAGCTTACAAACGTTTTGATACCGTGCGA-GGGATGGATTATCG 242 * * ** * ***** ** ** * * * * * *** consensus_5840#0 ACAGCGACAAAATTCATA----AGCGTTTGTGGAACATTG-----AGTGAGCTC--GAGA 937 consensus_5840#2 ACAGCGACAAAATTCATA----AGCGTTTGTGGAACATTG-----AGTGAGCTC--GAGT 281 consensus_5840#1 GCTATTGCTTAATTTCTATGACAGAAAACGTAGGACAATGGTGCAAAAGAGTTTTGAAGT 302 * * **** ** ** ** * *** ** * *** * ** consensus_5840#0 AACGATTGCTATTG--TTGAATGTAATACTTTCATCT--ATTGGCAAACGGATTGATACC 993 consensus_5840#2 AACGATTGCTATTG--TTGAATGTAATACTTTCATCT--ATTGGCAAACGGATTGATACC 337 consensus_5840#1 GATTAAACCTATTAGCTTGATAGAAATAATCCCATCCCCATATGTGACTGAA--AGTACT 360 * * ***** **** * **** * **** ** * * * * *** consensus_5840#0 CATGCAACCCTTGATCCATCC-TGTTTATGTTTC---TCCGG------------------ 1031 consensus_5840#2 CATGCAACCCTTGATCCATCC-TGTTTATGTTTC---TCTGTGAGGGCTAAAGCAATATT 393 consensus_5840#1 CGTGTAGCTTTACTTTTACCCGTATTTGAGAGTCAAATCCTAGAAGCGGAGCAGTTTATG 420 * ** * * * * * ** * *** * ** ** consensus_5840#0 ------------------------------------------------------------ consensus_5840#2 TTTTAGAGGAAGAAATACATCTTGATCTCCTTTACTAGGGGTTTCCGCACGATAAAAGAA 453 consensus_5840#1 GAACTCTACGAAAAAACTTGCATGGAAAGCCAGGATAATACTTTTCTCATGCTCATATTC 480 consensus_5840#0 ------------------------------------------------------------ consensus_5840#2 TATGAGCATGAGAAAAGTATTATCCTGGCTTTGCCATGCAAGTTTTTTCGCCTTGACCCC 513 consensus_5840#1 TTTTATCGTGCGGAAACCCCTAGTAAAGGAGATCAAGATGTATTTCTTCCTCTAAAAAAT 540 consensus_5840#0 --------- consensus_5840#2 GAGTCTGGC 522 consensus_5840#1 ATTGC---- 545 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||