cluster # 5842

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Anopheles gambiae
cluster # 5842 cluster # 5842 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5842#0 length = 976 sequences # 3

consensus_5842#1 length = 585 sequences # 1

consensusID : consensus_5842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 976
fasta sequence

                              [CCGTTTGCGAGGAAACCCGATTTCAAGTTAAAGGAAGCCGCTTTAGATCTTGCGTGAAAATGAACGTGAAACTTCGGGCTTTTTTTGTGCTATATTCAGGCTACAGACCATTTAATATTTATAAGAATATGGCTTATCATATACCAAAAGAAAGAATATAAATTAAATGCCTTTGCGTGTTATTCTCCGCTGATCATTATTTTTTCACCGTGAACAAAGCGGAAAATCCCAAGGGAATGCATTTAATTTATTATTTCAATATATTTCCGATTTTATAGAATGTCCTAGCTTTTGATGTACGAGAAGCCATATTCTGATTAATATGTATTGATATATATCAATAAAAACCCGAAGTGT-CACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTT-------ACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGC------AGCAGGTTTCTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACAATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCTAGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAAATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTCATGTCCCCGCTAACAGTAGCTATTCCATTTTCAGCACGTTGCAGTCAGTGCTGCAAAATGTCATGAGAATCACCATCGAAAACAATGAACATATCCGTGGTAGTTTG]

[+] EMBL BM656403             [CCGTTTGCGAGGAAACCCGATTTCAAGTTAAAGGAAGCCGCTTTAGATCTTGCGTGAAAATGAACGTGAAACTTCGGGCTTTTTTTGTGCTATATTCAGGCTACAGACCATTTAATATTTATAAGAATATGGCTTATCATATACCAAAAGAAAGAATATAAATTAAATGCCTTTGCGTGTTATTCTCCGCTGATCATTATTTTTTCACCGTGAACAAAGCGGAAAATCCCAAGGGAATGCATTTAATTTATTATTTCAATATATTTTATATTTTATAGAATATATTAGCTTTTGATGTACGAAAAGCCATATTCTGATTAATATGTATTGATATATATCAATAAAAACCCGAAATGT CACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTTACTACGGACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGCTAGCATAGCAGGTTTTTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACATGCACTGCAATTCGTCTCTTTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAATGGTTTCAGAAAATTCGTTGTTAGAACAAAATATGACTTACAATTGACAAT                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM620616             [                                                                                                                                                                                                                                                                          CCGATTTTATAGAATGTCCTAGCTTTTGATGTACGAGGGGCCATATTCTGATTAATATGTATTGATATATATCAATAAAGACCCGAAGTGT CACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTT       ACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGC      AGCAGGTTTCTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACAATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCTAGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAAATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTCATGTCCCCGCTAACAGTAGCTATTCCATTTTCAGCACGTTGCAGTCAGTGCTGCAAAATGTCATGAGAATCACCATCGAAAACAATGAACATATCCGTGGTAGTTTG]
[+] EMBL BM617093             [                                                                                                                                                                                                                                                                          CCGATTTTATAGAATGTCCTAGCTTTTGATGTACGAGAAGCCATATTCTGATTAATATGTATTGATATATATCAATAAAAACCCGGGGGGTGCACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTT       ACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGC      AGCAGGTTTCTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACAATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCTAGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAAATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTCATGTCCCCGCTAACAGTAGCTATTC                                                                                  ]




>consensus_5842#0
CCGTTTGCGAGGAAACCCGATTTCAAGTTAAAGGAAGCCGCTTTAGATCTTGCGTGAAAA
TGAACGTGAAACTTCGGGCTTTTTTTGTGCTATATTCAGGCTACAGACCATTTAATATTT
ATAAGAATATGGCTTATCATATACCAAAAGAAAGAATATAAATTAAATGCCTTTGCGTGT
TATTCTCCGCTGATCATTATTTTTTCACCGTGAACAAAGCGGAAAATCCCAAGGGAATGC
ATTTAATTTATTATTTCAATATATTTCCGATTTTATAGAATGTCCTAGCTTTTGATGTAC
GAGAAGCCATATTCTGATTAATATGTATTGATATATATCAATAAAAACCCGAAGTGTCAC
TTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTT
TAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATA
ATAGTGGAGGTGTTACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGCA
GCAGGTTTCTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACTTGCACTGCA
ATTCGTCTCATTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAAATGTTACAGAAAA
TTCGTTATTAGAACAAAATATGACTTACAATTGACAATATGGAAATAAGATTTAAAAAAC
GGCTAGTAGATGTAAAGCTTGAGCTAGCTAGACAAATCATGTAATTGCATGCCCAATATG
TTACGTAGCATGGCCGTGAGGCTCGAGAAATTGTGCCAGCTATCTGAAATTAAGAGACAT
ACTACACTAAAACACGTGCTGTTACGTTCATGTCCCCGCTAACAGTAGCTATTCCATTTT
CAGCACGTTGCAGTCAGTGCTGCAAAATGTCATGAGAATCACCATCGAAAACAATGAACA
TATCCGTGGTAGTTTG

consensusID : consensus_5842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [ATGCCTGCCCTTTTNGTTNAAATTTTTGCTATATTCAGGTTACAAGACCATTTGATATTGATAGGAGTATGGCTTGTCATATACCAAAGAAAGGATATAAATTGAATGCATTTCCTTGTGATTCTCCGCCTATCATTATTATCATTATCACCGTGAACAAAGCAGGAAATCACAAGGGAATGCATTTGGTTTATTATGCCAATATATTTTGTTGTTTAAATAGTTGGAGGATAGAATGTCCTTTCTTTTGGTGTATGAGGGGCCGTATTCTGATTGATATTTATTGATAGATAGCAATAAAACCCGAAATGTCACTTTCAATTGCACTAAAGCTGTAACTCGGGCTTTAGAATGAAGCCAATTATTAGGCGTTTAATTTTAGGCATAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGAAGGTGTTACTACGGACTCATAGATTATCTTCCAATGCGGTAAAACCACGGTAGTACAGCTAGCACAGCAGGTTTCTCACTTTATACGTGGCTGTTGGCATACTTTCTTAGTAAAACTTGCGCTGCAATTGTCTCTTTACACGTTT]

[+] EMBL BX466690             [ATGCCTGCCCTTTTNGTTNAAATTTTTGCTATATTCAGGTTACAAGACCATTTGATATTGATAGGAGTATGGCTTGTCATATACCAAAGAAAGGATATAAATTGAATGCATTTCCTTGTGATTCTCCGCCTATCATTATTATCATTATCACCGTGAACAAAGCAGGAAATCACAAGGGAATGCATTTGGTTTATTATGCCAATATATTTTGTTGTTTAAATAGTTGGAGGATAGAATGTCCTTTCTTTTGGTGTATGAGGGGCCGTATTCTGATTGATATTTATTGATAGATAGCAATAAAACCCGAAATGTCACTTTCAATTGCACTAAAGCTGTAACTCGGGCTTTAGAATGAAGCCAATTATTAGGCGTTTAATTTTAGGCATAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGAAGGTGTTACTACGGACTCATAGATTATCTTCCAATGCGGTAAAACCACGGTAGTACAGCTAGCACAGCAGGTTTCTCACTTTATACGTGGCTGTTGGCATACTTTCTTAGTAAAACTTGCGCTGCAATTGTCTCTTTACACGTTT]




>consensus_5842#1
ATGCCTGCCCTTTTNGTTNAAATTTTTGCTATATTCAGGTTACAAGACCATTTGATATTG
ATAGGAGTATGGCTTGTCATATACCAAAGAAAGGATATAAATTGAATGCATTTCCTTGTG
ATTCTCCGCCTATCATTATTATCATTATCACCGTGAACAAAGCAGGAAATCACAAGGGAA
TGCATTTGGTTTATTATGCCAATATATTTTGTTGTTTAAATAGTTGGAGGATAGAATGTC
CTTTCTTTTGGTGTATGAGGGGCCGTATTCTGATTGATATTTATTGATAGATAGCAATAA
AACCCGAAATGTCACTTTCAATTGCACTAAAGCTGTAACTCGGGCTTTAGAATGAAGCCA
ATTATTAGGCGTTTAATTTTAGGCATAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGAC
AATAAGTATAATAATAGTGAAGGTGTTACTACGGACTCATAGATTATCTTCCAATGCGGT
AAAACCACGGTAGTACAGCTAGCACAGCAGGTTTCTCACTTTATACGTGGCTGTTGGCAT
ACTTTCTTAGTAAAACTTGCGCTGCAATTGTCTCTTTACACGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5842#0      CCGTTTGCGAGGAAACCCGATTTCAAGTTAAAGGAAGCCGCTTTAGATCTTGCGTGAAAA 60
consensus_5842#1      ------------------------------------------------------------
                                                                                  

consensus_5842#0      TGAACGTGAAACTTCGGGCTTTTTTTGTGCTATATTCAGGCTACA-GACCATTTAATATT 119
consensus_5842#1      -ATGCCTGCCCTTTTNGTTNAAATTTTTGCTATATTCAGGTTACAAGACCATTTGATATT 59
                          * **    **  *      *** ************* **** ******** *****

consensus_5842#0      TATAAGAATATGGCTTATCATATACCAAAAGAAAGAATATAAATTAAATGCCTTTGCGTG 179
consensus_5842#1      GATAGGAGTATGGCTTGTCATATACCAAA-GAAAGGATATAAATTGAATGCATTTCCTTG 118
                       *** ** ******** ************ ***** ********* ***** *** * **

consensus_5842#0      TTATTCTCCGCTGATCATTATT----TTTTCACCGTGAACAAAGCGGAAAATCCCAAGGG 235
consensus_5842#1      TGATTCTCCGCCTATCATTATTATCATTATCACCGTGAACAAAGCAGGAAATCACAAGGG 178
                      * *********  *********    ** **************** * ***** ******

consensus_5842#0      AATGCATTTAATTTATTATTTCAATATATTTCCGATTTTA-------------TAGAATG 282
consensus_5842#1      AATGCATTTGGTTTATTATGCCAATATATTTTGTTGTTTAAATAGTTGGAGGATAGAATG 238
                      *********  ********  **********     ****             *******

consensus_5842#0      TCCTAGCTTTTGATGTACGAGAAGCCATATTCTGATTAATATGTATTGATATATATCAAT 342
consensus_5842#1      TCCTTTCTTTTGGTGTATGAGGGGCCGTATTCTGATTGATATTTATTGATAGATAGCAAT 298
                      ****  ****** **** ***  *** ********** **** ******** *** ****

consensus_5842#0      AAAAACCCGAAGTGTCACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGA 402
consensus_5842#1      AAAA-CCCGAAATGTCACTTTCAATTGCACTAAAGCT--GTAACTCGGGCTTTAGAATGA 355
                      **** ****** ************** **********  *********************

consensus_5842#0      AGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGA 462
consensus_5842#1      AGCCAATTATTAGGCGTTTAATTTTAGGCATAGCGCGCTTTCCGGCTGACCAAAATGTGA 415
                      ******** **** ********* ***** ******************************

consensus_5842#0      GCGACAATAAGTATAATAATAGTGGAGGTGTTACT-------CATACATTATCTTCCAAT 515
consensus_5842#1      GCGACAATAAGTATAATAATAGTGAAGGTGTTACTACGGACTCATAGATTATCTTCCAAT 475
                      ************************ **********       **** *************

consensus_5842#0      GCGGTAAAACCATGGTAGTATAGC------AGCAGGTTTCTCACTTTAAACGTGGCTGTT 569
consensus_5842#1      GCGGTAAAACCACGGTAGTACAGCTAGCACAGCAGGTTTCTCACTTTATACGTGGCTGTT 535
                      ************ ******* ***      ****************** ***********

consensus_5842#0      GGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTT 629
consensus_5842#1      GGCATACTTTCTTAGTAAAACTTGCGCTGCAATT-GTCTCTTTACACGTTT--------- 585
                      **** ******************** ******** ***** **********         

consensus_5842#0      CTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACA 689
consensus_5842#1      ------------------------------------------------------------
                                                                                  

consensus_5842#0      ATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCT 749
consensus_5842#1      ------------------------------------------------------------
                                                                                  

consensus_5842#0      AGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAA 809
consensus_5842#1      ------------------------------------------------------------
                                                                                  

consensus_5842#0      ATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTC 869
consensus_5842#1      ------------------------------------------------------------
                                                                                  

consensus_5842#0      ATGTCCCCGCTAACAGTAGCTATTCCATTTTCAGCACGTTGCAGTCAGTGCTGCAAAATG 929
consensus_5842#1      ------------------------------------------------------------
                                                                                  

consensus_5842#0      TCATGAGAATCACCATCGAAAACAATGAACATATCCGTGGTAGTTTG 976
consensus_5842#1      -----------------------------------------------