These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 803 fasta sequence [CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATATTCATATTTTATGT-TTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA] [+] EMBL BM618181 [CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACTAGTTGTTATATTCATATTTTATGTGTTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCTCGAGTGGTGCAGCTTACAGAAGAGAACCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGA ] [+] EMBL CNS08THU [ CTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATATTCATATTTTATGT TTATATCGGCGTTAGTTCGGACAGAATACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGATGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA] [+] EMBL BM647494 [ ccgCTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTAGTTATATTCATATTTTATGT TTATATCGGCGTTAGTTCGAACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAAAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATG ] consensusID : consensus_5845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAGGTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAGGCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGCTACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATGTCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCTGGATACGAAGATGAGGATGC] [+] EMBL BM641609 [CCGGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAGGTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAGGCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGCTACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATGTCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCTGGATACGAAGATGAGGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5845#0 CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATA 60 consensus_5845#1 ------------------------------------------------------------ consensus_5845#0 TTCATATTTTATGTTTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTA 120 consensus_5845#1 ------------------------------------------------------------ consensus_5845#0 TACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTT 180 consensus_5845#1 ------------------------------------------------------------ consensus_5845#0 AATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCT 240 consensus_5845#1 ------------------------------------------------------------ consensus_5845#0 ACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAG 300 consensus_5845#1 ------------------------------------------------------------ consensus_5845#0 ATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAA 360 consensus_5845#1 ------------------------------------------------------------ consensus_5845#0 AAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGAC 420 consensus_5845#1 --------------------------------------CCGGGCAAATCGAGTGGAGGAC 22 * ******************* consensus_5845#0 TTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTT 480 consensus_5845#1 TTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTT 82 ************************************************************ consensus_5845#0 GGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCT 540 consensus_5845#1 GGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCT 142 ************************************************************ consensus_5845#0 TTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGT 600 consensus_5845#1 TTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGT 202 ************************************************************ consensus_5845#0 TCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACT 660 consensus_5845#1 TCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACT 262 ************************************************************ consensus_5845#0 ATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAAT 720 consensus_5845#1 ATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAAT 322 ************************************************************ consensus_5845#0 CGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCG--------------------- 759 consensus_5845#1 CGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAG 382 *************************************** consensus_5845#0 ---------------GCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA- 803 consensus_5845#1 GTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAG 442 ******************************************** consensus_5845#0 ------------------------------------------------------------ consensus_5845#1 GCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGC 502 consensus_5845#0 ------------------------------------------------------------ consensus_5845#1 TACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATG 562 consensus_5845#0 ------------------------------------------------------------ consensus_5845#1 TCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCT 622 consensus_5845#0 -------------------- consensus_5845#1 GGATACGAAGATGAGGATGC 642 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||