Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5845 cluster # 5845       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5845#0 length = 803 sequences # 3  
consensus_5845#1 length = 642 sequences # 1  

consensusID : consensus_5845#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 803
fasta sequence
                              [CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATATTCATATTTTATGT-TTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA]

[+] EMBL BM618181             [CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACTAGTTGTTATATTCATATTTTATGTGTTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCTCGAGTGGTGCAGCTTACAGAAGAGAACCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGA                                                                                                                                                                                                                                                                                          ]
[+] EMBL CNS08THU             [          CTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATATTCATATTTTATGT TTATATCGGCGTTAGTTCGGACAGAATACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGATGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA]
[+] EMBL BM647494             [       ccgCTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTAGTTATATTCATATTTTATGT TTATATCGGCGTTAGTTCGAACAGATTACCTAAAGGAATATTTCTATACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTTAATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCTACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAGATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAAAAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAAAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATG                                                                                              ]


>consensus_5845#0 CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATA TTCATATTTTATGTTTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTA TACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTT AATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCT ACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAG ATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAA AAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGAC TTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTT GGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCT TTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGT TCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACT ATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAAT CGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGGCCGAAAGAGATTTACGAGTG GCACAATCTGAATTTGACCGACA



consensusID : consensus_5845#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence
                              [CCGGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAGGTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAGGCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGCTACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATGTCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCTGGATACGAAGATGAGGATGC]

[+] EMBL BM641609             [CCGGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAGGTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAGGCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGCTACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATGTCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCTGGATACGAAGATGAGGATGC]


>consensus_5845#1 CCGGGCAAATCGAGTGGAGGACTTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACG TTTGAGTAATCTGGAATACCTTGGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACA GGACGGACCGTACGGCAGTGCTTTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTC TTGTGAACGTGATTTCATCGGTTCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATT CTTGGAAGGAGAAATGAAAACTATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTT GGATTTGGATGCATGCAAAAATCGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGC GAAGGATGGAATATCGCCAGAGGTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGC ACAATCTGAATTTGACCGACAGGCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCAC GACGCAAGCCACCCATTTGCGCTACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTA CGGCCAATGCAATAAGATTATGTCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCC GCAACCGTATGTACCGGTGTCTGGATACGAAGATGAGGATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5845#0      CCGAATCGAACTATTCTTTCGTACCATTCGCTGTATCTGTTGTGAAAACAAGTTGTTATA 60
consensus_5845#1      ------------------------------------------------------------
                                                                                  

consensus_5845#0      TTCATATTTTATGTTTATATCGGCGTTAGTTCGGACAGATTACCTAAAGGAATATTTCTA 120
consensus_5845#1      ------------------------------------------------------------
                                                                                  

consensus_5845#0      TACACACTTGTGGTACTCTAGTTAAAATCCCGTACACAGTAACGTGTGAATACCGATCTT 180
consensus_5845#1      ------------------------------------------------------------
                                                                                  

consensus_5845#0      AATATGAATATCAAAATGCCGGACTTTGATGTGAAGAAGTTTGTAAAAGGGGCTGGCTCT 240
consensus_5845#1      ------------------------------------------------------------
                                                                                  

consensus_5845#0      ACACTATCGCGTGTGGTGCAGCTTACAGAAGAGAAGCTAGGGACATCGGAAAAAACAGAG 300
consensus_5845#1      ------------------------------------------------------------
                                                                                  

consensus_5845#0      ATGGATGCCCGTTTCGAGCATTTGAGTGAACGTTCCGACTCGGCTAAATTGTGGACGGAA 360
consensus_5845#1      ------------------------------------------------------------
                                                                                  

consensus_5845#0      AAAATCATGCGTGACACGGAGGCAGCACTTATACCGAATCCGGCAAATCGAGTGGAGGAC 420
consensus_5845#1      --------------------------------------CCGGGCAAATCGAGTGGAGGAC 22
                                                             * *******************

consensus_5845#0      TTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTT 480
consensus_5845#1      TTTATATTTGAGAAAATCGAAAAACAGAAGCCTAAACGTTTGAGTAATCTGGAATACCTT 82
                      ************************************************************

consensus_5845#0      GGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCT 540
consensus_5845#1      GGATTGGACATGATAGAAGGGGGTGGAGAATTCGGACAGGACGGACCGTACGGCAGTGCT 142
                      ************************************************************

consensus_5845#0      TTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGT 600
consensus_5845#1      TTGATCAAAGTGGGGCAGGCTGAGCAAAAGCTCGGTTCTTGTGAACGTGATTTCATCGGT 202
                      ************************************************************

consensus_5845#0      TCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACT 660
consensus_5845#1      TCTGCTGGCATGTGTTTTATTCAGCCACTGAAAAAATTCTTGGAAGGAGAAATGAAAACT 262
                      ************************************************************

consensus_5845#0      ATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAAT 720
consensus_5845#1      ATCACTAAAGAGAAAGGTGTGCTCGAGAGTAAACGTTTGGATTTGGATGCATGCAAAAAT 322
                      ************************************************************

consensus_5845#0      CGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCG--------------------- 759
consensus_5845#1      CGGGTCCGTAAAGCGCGCAGTATGATTGGCCAGCAAGCGAAGGATGGAATATCGCCAGAG 382
                      ***************************************                     

consensus_5845#0      ---------------GCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACA- 803
consensus_5845#1      GTGACATTAGAACAGGCCGAAAGAGATTTACGAGTGGCACAATCTGAATTTGACCGACAG 442
                                     ******************************************** 

consensus_5845#0      ------------------------------------------------------------
consensus_5845#1      GCTGAAATAACGAAATTGCTGCTAGAAGGAATTAGCACGACGCAAGCCACCCATTTGCGC 502
                                                                                  

consensus_5845#0      ------------------------------------------------------------
consensus_5845#1      TACCTGCACTCCTTAGTGGAAGCTCAAGTCCGTTACTACGGCCAATGCAATAAGATTATG 562
                                                                                  

consensus_5845#0      ------------------------------------------------------------
consensus_5845#1      TCGGACTTACAACGAGAGCTAGTTAGTCTCGGTGGCCCGCAACCGTATGTACCGGTGTCT 622
                                                                                  

consensus_5845#0      --------------------
consensus_5845#1      GGATACGAAGATGAGGATGC 642
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)