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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1041 fasta sequence
[CCGAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATTGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGAACGCGTGAGAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCTTCTCCTTTGACATTGTGGCCCGATCTACTTCCAATTAGTTCTTTTTTGTTTTGTTTTGTTTTTTTTTGGTTGTATGTACTACGACGCAAGTTGTAAACACTATACATACGCCGAATCTCGTCACCCCCTTCCTCACCATCCTTACCTCTCTCCTCAAGGTAGCCAATTTTTAAATCTAATTCTCCTTTGCATGATGTGTGTGCAACAACAAAGCTCGATGTGTACATGTTTTAGAGTTTAATTTTGTTTTTTGTTTTAACTTTTTCATCCGCAAAAAAGCAATACGCGGATGCGGACGTCGCGCTCAAAATTCTAATCCCACGCTTTTGCTTCCAATGTTCTCCATCCCTAGCAGAGCATCCCTTTTGGTCAACTTTTCCATATTTCTATTCAT]
[+] EMBL BM618284 [CCGAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATTGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGAACGCGTGAGAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGA ]
[+] EMBL BX624539 [ AGCCTCTTCCATTGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGAACGCGTGAGAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCTTCTCCTTTGACATTGTGGCCCGATCTACTTCCAA ]
[+] EMBL BX628761 [ TACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCTTCTCCTTTGACATTGTGGCCCGATCTACTTCCAATTAGTTCTTTTTTGTTTTGTTTTGTTTTTTTTTGGTTGTATGTACTACGACGCAAGTTGTAAACACTATACATACGCCGAATCTCGTCACCCCCTTCCTCACCATCCTTACCTCTCTCCTCAAGGTAGCCAATTTTTAAATCTAATTCTCCTTTGCATGATGTGTGTGCAACAACAAAGCTCGATGTGTACATGTTTTAGAGTTTAATTTTGTTTTTTGTTTTAACTTTTTCATCCGCAAAAAAGCAATACGCGGATGCGGACGTCGCGCTCAAAATTCTAATCCCACGCTTTTGCTTCCAATGTTCTCCATCCCTAGCAGAGCATCCCTTTTGGTCAACTTTTCCATATTTCTATTCAT]
consensusID : consensus_5846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGGGGGATCAACGACGGCTACGGGATGTGGTGACCACCGCCTTTCGCACAAAACTCTTACCACAACCCTGGTAACAGCACAACCTCTCATTATACATTTATATACATAGTAACTACACACAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATAGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCTAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGCAACGCGTGAAAGCGAACGAAACGAGCGCCTACGGAACGGAAAATTGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTGTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTCGGAGGGATTGGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACG]
[+] EMBL BM632590 [CCGGGGGATCAACGACGGCTACGGGATGTGGTGACCACCGCCTTTCGCACAAAACTCTTACCACAACCCTGGTAACAGCACAACCTCTCATTATACATTTATATACATAGTAACTACACACAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATAGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCTAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGCAACGCGTGAAAGCGAACGAAACGAGCGCCTACGGAACGGAAAATTGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTGTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTCGGAGGGATTGGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5846#0 ------------------------------------------------------------
consensus_5846#1 CCGGGGGATCAACGACGGCTACGGGATGTGGTGACCACCGCCTTTCGCACAAAACTCTTA 60
consensus_5846#0 ----------------------------------------------------------CC 2
consensus_5846#1 CCACAACCCTGGTAACAGCACAACCTCTCATTATACATTTATATACATAGTAACTACACA 120
*
consensus_5846#0 GAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATT 62
consensus_5846#1 CAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATA 180
**********************************************************
consensus_5846#0 GGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGC 122
consensus_5846#1 GGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCTAAACGCGATGC 240
************************************************ ***********
consensus_5846#0 AATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTG-AACGCGTGA------------ 169
consensus_5846#1 AATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGCAACGCGTGAAAGCGAACGAAA 300
************************************** *********
consensus_5846#0 -GAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAAC 228
consensus_5846#1 CGAGCGCCTACGGAACGGAAAATTGAATGAGACACTATTGAAACTACGGTTAACGATAAC 360
********************** ************************************
consensus_5846#0 ACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAA 288
consensus_5846#1 ACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAA 420
************************************************************
consensus_5846#0 AGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAG 348
consensus_5846#1 AGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAG 480
************************************************************
consensus_5846#0 CACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTG 408
consensus_5846#1 CACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTGTGTCTTTGGCAGGGTGCATTTTG 540
************************************ ***********************
consensus_5846#0 TCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAA 468
consensus_5846#1 TCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAA 600
************************************************************
consensus_5846#0 AGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGG-CGCTTCCAA 527
consensus_5846#1 AGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTT-CGGAGGGATTGGGCGCTTCCAA 659
************************************* ************ *********
consensus_5846#0 GACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCA 587
consensus_5846#1 GACCGACACGATTCACCCTGGTGGACTCAACG---------------------------- 691
********************************
consensus_5846#0 CTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCT 647
consensus_5846#1 ------------------------------------------------------------
consensus_5846#0 TCTCCTTTGACATTGTGGCCCGATCTACTTCCAATTAGTTCTTTTTTGTTTTGTTTTGTT 707
consensus_5846#1 ------------------------------------------------------------
consensus_5846#0 TTTTTTTGGTTGTATGTACTACGACGCAAGTTGTAAACACTATACATACGCCGAATCTCG 767
consensus_5846#1 ------------------------------------------------------------
consensus_5846#0 TCACCCCCTTCCTCACCATCCTTACCTCTCTCCTCAAGGTAGCCAATTTTTAAATCTAAT 827
consensus_5846#1 ------------------------------------------------------------
consensus_5846#0 TCTCCTTTGCATGATGTGTGTGCAACAACAAAGCTCGATGTGTACATGTTTTAGAGTTTA 887
consensus_5846#1 ------------------------------------------------------------
consensus_5846#0 ATTTTGTTTTTTGTTTTAACTTTTTCATCCGCAAAAAAGCAATACGCGGATGCGGACGTC 947
consensus_5846#1 ------------------------------------------------------------
consensus_5846#0 GCGCTCAAAATTCTAATCCCACGCTTTTGCTTCCAATGTTCTCCATCCCTAGCAGAGCAT 1007
consensus_5846#1 ------------------------------------------------------------
consensus_5846#0 CCCTTTTGGTCAACTTTTCCATATTTCTATTCAT 1041
consensus_5846#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||