These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 918 fasta sequence [CCGGTAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTCTATAACCATTCCTATCATCTTTCTACATCATTCAGCAACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACAGCCACTGTTGTAATAATCCTTCCTTTGGCAGTAAAGTAACGTTTGCTTCCTTTTGTCCCATGGTCCTTTTCACTTTAGGCGCACAGTTTCACATCCCCCTGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGATGTAAGAGGTAGTGTTTCTTTCCTCCCTGTAGTTTTTAATTAGCAAACACCCATGTGCAAATGCAACACGTTCTGTAAATCGAACACTAAGGAAAAGGGATCAGGCACAGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACGTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTATAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGAACAGGGTAAATATATTGTGTAGCAGAGTAGGGAAACGGAAATGGCAAAAGTGCGAACAGTGCAGAAGTGTCCGTCGGATAGATGAAACTAATTTATATATTTGTAAGCATTTCTCAAAT] [+] EMBL BM619704 [CCGGTAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTCTATAACCATTCCTATCATCTTTCTACATCATTCAGCAACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACAGCCACTGTTGTAATAATCCTTCCTTTGGCAGTAAAGTAACGTTTGCTTCCTTTTGTCCCATGGTCCTTTTCACTTTAGGCGCACAGTTTCACATCCCCCTGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGATGTAAGAGGTAGTGTTTCTTTCCTCCCTGTAGTTTTTAATTAGCAAACACCCATGTGCAAATGCAACACGTTCTGTAAATCGAACACTAAGGAAAAGGGATCAGGCACAGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACGTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTATAGAAACTAGAAGAT ] [+] EMBL BX628799 [ ATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGAACAGGGTAAATATATTGTGTAGCAGAGTAGGGAAACGGAAATGGCAAAAGTGCGAACAGTGCAGAAGTGTCCGTCGGATAGATGAAACTAATTTATATATTTGTAAGCATTTCTCAAAT] consensusID : consensus_5850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [AATATACTTAAGCATGCATAAGATGAATATGCATTTCTCCTACAGAGGTTTTGCTTTGCTCTTTCTTTTCTTGTTTTCTTTAGTTTGTTAGCACTGTAAAGGCAGGCCGGCGGGGATTTTATGGGTAAAGCGGCTGAACACACTTGCCCTTGAGTGATGTATTCCGTCGTAACTCATGATGCATCTGTTTGTTGTGTATTTATATAAGTATTGCTCTGCCTGTGCAAATTCGTTTTAATCACAGCGACCAGTAAGAAAGTGAACAGCCTGTGCTCGCTATCGCCACGAGAGGCAGACCACAGCGATGAGCAAGCAATTGCACACATTACACAATTCTAGAAACGCTCACAAGCAAAGTACAGCATATAAATGATGGGAAGAAACGACACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACGGCCACTGTTGTAATAATCCTTCCTTTGACAGTAGAGTAACGTTGGCTTTCTTCTGTCCCATGGTCCCTTTCACTTTGCGCGCACAGTTCCACATCCCCATGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGAT] [+] EMBL BX628723 [AATATACTTAAGCATGCATAAGATGAATATGCATTTCTCCTACAGAGGTTTTGCTTTGCTCTTTCTTTTCTTGTTTTCTTTAGTTTGTTAGCACTGTAAAGGCAGGCCGGCGGGGATTTTATGGGTAAAGCGGCTGAACACACTTGCCCTTGAGTGATGTATTCCGTCGTAACTCATGATGCATCTGTTTGTTGTGTATTTATATAAGTATTGCTCTGCCTGTGCAAATTCGTTTTAATCACAGCGACCAGTAAGAAAGTGAACAGCCTGTGCTCGCTATCGCCACGAGAGGCAGACCACAGCGATGAGCAAGCAATTGCACACATTACACAATTCTAGAAACGCTCACAAGCAAAGTACAGCATATAAATGATGGGAAGAAACGACACAAGCTGCTGAACGTGAAAGAGATCTATTTATTAATGTTTAAATGCGCTGATATGAACGGCCACTGTTGTAATAATCCTTCCTTTGACAGTAGAGTAACGTTGGCTTTCTTCTGTCCCATGGTCCCTTTCACTTTGCGCGCACAGTTCCACATCCCCATGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTGATTGTCCTGTAGTGAT] consensusID : consensus_5850#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [AGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTT] [+] EMBL BX616081 [AGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGAAAAAAGAAAGAAAAGAAAATATATACGCAACAACCAATAATGGTGTGGGATTAAGTGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAAATTACCACCATTTAGAATGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCAGAAAAGTGAAACGACAGTGAAAAGATAAAGGTAGAATGTTGGTAGCAGTTTACTTACAGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGGCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5850#0 CCGGTAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTCTATAAC 60 consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 ------------------------------------------------------------ consensus_5850#0 CATTCCTATCATCTTTCTACATCATTCAGCAACAAGCTGCTGAACGTGAAAGAGATCTAT 120 consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 ------------------------------------------------------------ consensus_5850#0 TTATTAATGTTTAAATGCGCTGATATGAACAGCCACTGTTGTAATAATCCTTCCTTTGGC 180 consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 ------------------------------------------------------------ consensus_5850#0 AGTAAAGTAACGTTTGCTTCCTTTTGTCCCATGGTCCTTTTCACTTTAGGCGCACAGTTT 240 consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 ------------------------------------------------------------ consensus_5850#0 CACATCCCCCTGAAATGCCCCATGCATACATATATACCTGCAAAACGCGGAGCTTGAGTG 300 consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 ------------------------------------------------------------ consensus_5850#0 ATTGTCCTGTAGTGATGTAAGAGGTAGTGTTTCTTTCCTCCCTGTAGTTTTTAATTAGCA 360 consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 ------------------------------------------------------------ consensus_5850#0 AACACCCATGTGCAAATGCAACACGTTCTGTAAATCGAACACTAAGGAAAAGGGATCAGG 420 consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 ------------------------------------------------------------ consensus_5850#0 CACAGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACGTAC 480 consensus_5850#2 ---AGCATAATAACGGCCAGGAATGGGATAAAGGTAGAATGTTGGTAGCAGTTTACTTAC 57 consensus_5850#1 ---AATATACTTAAG--CATGCATAAGATGAATATGCATTTCTCCTACAGAGGTTTTGCT 55 * *** * * * ** * ** *** ** * * * * ** * consensus_5850#0 AGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTATAGAAACTAGAAGATG 540 consensus_5850#2 AGGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATG 117 consensus_5850#1 TTGCTCTTTCTTTTCTTGTTTTCTTTAGTTTGTTAGCAC---TGTAAAGGCAGGCCGGCG 112 * * * * * ** * * ** * * * * * ** * * * * * consensus_5850#0 GCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGA 600 consensus_5850#2 GCAACGATGCAGGGAAAATGATATAATGTTTGTTTGTTAGGTTGTTGTTTTGCAAGATGA 177 consensus_5850#1 GGGATTTTATGGGTAAAGCGGCTGAACACACTTGCCCTTGAGTGATGTATTCCGTCGTAA 172 * * * ** *** * ** * * * ** *** ** * * * consensus_5850#0 AAAAAGAAAGAAAAGA-----AAATATATACGCAACAACCAATAATGGTGTGGGATTAAG 655 consensus_5850#2 AAAAAGAAAGAAAAGA-----AAATATATACGCAACAACCAATAATGGTGTGGGATTAAG 232 consensus_5850#1 CTCATGATGCATCTGTTTGTTGTGTATTTATATAAGTATTGCTCTGCCTGTGCAAATTCG 232 * ** * * *** ** ** * * **** * * * consensus_5850#0 TGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAA-ATTACCACCATTTAGAA 714 consensus_5850#2 TGCAAGAGAAAAAAAATCATGGTAAAGTTCGCATCAGGCGAA-ATTACCACCATTTAGAA 291 consensus_5850#1 TTTTAATCACAGCGACCAGTAAGAAAGTGAACAGCCTGTGCTCGCTATCGCCACG-AGAG 291 * * * * * * ***** ** * * * ** * *** *** consensus_5850#0 TGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCA 774 consensus_5850#2 TGTGTGTGTGTTCCTCAGGAAAGAGCCGCAAAATTGCTAATCGAATGTGAAAAGATAGCA 351 consensus_5850#1 GCAGACCACAGCGATGAGCAAGCAATTGCACA--CATTACACAATTCTAGAAACGCT-CA 348 * * ** ** * *** * ** * * * * *** ** consensus_5850#0 GAAAAGTGAAACGACAGTGAAAAGAACAGGGTAAATATATTGTGTAGCAGAGTA-----G 829 consensus_5850#2 GAAAAGTGAAACGACAGTGAAAAGATAAAGGTAGA-ATGTTG-GTAGCAGTTTACTTACA 409 consensus_5850#1 CAAGCAAAGTACAGCATATAAATGATGGGAAGAAACGACACAAGCTGCTGAACGTGAAAG 408 ** ** ** *** ** * * * ** * consensus_5850#0 GGAAACGGAAATGGCAAAAGTGCGAACAGTGCAGAAGTGTCCGTCGGAT-----AGATGA 884 consensus_5850#2 GGTTTTGTTGCTGAATGATGTAGAAAGATGATAGGAATGGTTTTAGAAACTAGAAGATGG 469 consensus_5850#1 AGATCTATTTATTAATGTTTAAATGCGCTGATATGAACGGCCACTGTTGT--AATAATCC 466 * * * * * * ** consensus_5850#0 AACTAATTTAT--ATATTTGTA--AGCATTTCTCAAAT---------------------- 918 consensus_5850#2 CAACGATGCAGGGAAAATGATAT-AATGTTTGTTTGTTAGGTTGTTGTTT---------- 518 consensus_5850#1 TTCCTTTGACAGTAGAGTAACGTTGGCTTTCTTCTGTCCCATGGTCCCTTTCACTTTGCG 526 * * * * ** * consensus_5850#0 ------------------------------------------------------------ consensus_5850#2 ------------------------------------------------------------ consensus_5850#1 CGCACAGTTCCACATCCCCATGAAATGCCCCATGCATACATATATACCTGCAAAACGCGG 586 consensus_5850#0 -------------------------- consensus_5850#2 -------------------------- consensus_5850#1 AGCTTGAGTGATTGTCCTGTAGTGAT 612 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||