cluster # 5854

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Anopheles gambiae
cluster # 5854 cluster # 5854 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5854#0 length = 859 sequences # 3

consensus_5854#1 length = 451 sequences # 1

consensusID : consensus_5854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 859
fasta sequence

                              [CCGCCCGTGTGCAAGTACACGCTCTAGTCAAATAATGGAACCGGAAACAAGTCTATTGGCAGAAGTCGTGGGGCACGTCAGGGCATTATTGAACATCGGAAAAGGGGCGAAATCAAGTTAACACAGACTTTAGTTACCATCGATCAACCGAGGAGGAAGGCGCCTACCAGTGTGACCACCCAGCCCGAAACCTATCCTCCCCAGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCATTTTACTACGTTATCGCGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCAATAATTATTTAAACCACCCCTCAAAAAAAATAGACAAACACTCTCACACACACAGAGATATTCCCAGTTTAGTAGCACAACAAGCATATAGAGGACGCCACCGTACCGAACACAGTAGTAGCAAGAATTATCGGTTTAGTTTGTAAAAGTGATAAGGTAAAACCCCGGCAAGCGAACGAGCGAACGAGCCCCAAAACCACCAAACCCCCCACGTGTTACGTTGGAAGGTGGCGTTTATATGCTTTGCAACGAACAGCAACTGCAGCACTTTAGTACACAGGCACACAGACACACACCATTCCCTTTATAACTGTATCGTGCCGTTAACGGGAGCATGAACGAAGTTAGAAAGGGTGGGGTGTACGATGATGAAAGGAAACATTTTATTGGAGAAAGGCTGTTTAAGACATTTGCGTGCACCAGCACGCACGAGCGTATGTGTGTGTGTGCGTGTACTTGTTGCGAGCATATTTAAAGTGAACGACGATNAACGAGAAGGCGGNGTGTGTGTGNTGTTTGTAGCATTCNGGCGAGCGACCTGGTCA]

[+] EMBL BM620132             [CCGCCCGTGTGCAAGTACACGCTCTAGTCAAATAATGGAACCGGAAACAAGTCTATTGGCAGAAGTCGTGGGGCACGTCAGGGCATTATTGAACATCGGAAAAGGGGCGAAATCAAGTTAACACAGACTTTAGTTACCATCGATCAACCGAGGAGGAAGGCGCCTACCAGTGTGACCACCCAGCCCGAAACCTATCCTCCCCAGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCATTTTACTACGTTATCGCGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCAATAATTATTTAAACCACCCCTCAAAAAAAATAGACAAACACTCTCACACACACAGAGATATTCCCAGTTTAGTAGCACAACAAGCATATAGAGGACGCCACCGTACCGAACACAGTAGTAGCAAGAATTATCGGTTTAGTTTGTAAAAGTGATAAGGTAAAACCCCGGCAAGCGAACGAGCGAACGAGCCCCAAAACCACCAAACCCCCCACGTGTTACGTTGGAAGGTGGCGTTTATATGCTTTGCAACGAACAGCAACTGCAGCACTTTAGTACACAGGCACACAGACACACACCATTCCCTTTATAACTGTATCGTGCCGTTAACGGGAGCATGA                                                                                                                                                                                                               ]
[+] EMBL BM625492             [                                                      ccgGGCAGAAGTCGTGGGGCACGTCAGGGCATTATTGAACATCGGAAAAGGGGCGAAATCAAGTTAACACAGACTTTAGTTACCATCGATCAACCGAGGAGGAAGGCGCCTACCAGTGTGACCACCCAGCCCGAAACCTATCCTCCCCAGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCATTTTACTACGTTATCGCGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCAATAATTATTTAAACCACCCCTCAAAAAAAATAGACAAACACTCTCACACACACAGAGATATTCCCAGTTTAGTAGCACAACAAGCATATAGAGGACGCCACCGTACCGAACACAGTAGTAGCAAGAATTATCGGTTTAGTTTGTAAAAGTGATAAGGTAAAACCCCGGCAAGCGAATGAGCGAACGAGCCCCAAAACCACCAAACCCCCCACGTGTTACGTTGGAAGGTGGCGTTTATATGCTTTGCAACGAACAGCAACTGCAGCACTTTAGTACACAGGCACACAGACACACACCATTCCCTTTATAACTGTATCGTGCCGTTAACGGGAGCATGAACGAAGTTAGAAAGGGTG                                                                                                                                                                                             ]
[+] EMBL BX621347             [                                                                                    ATTATTGAACATCGGAAAAGGGGCGAAATCAAGTTAACACAGACTTTAGTTACCATCGATCAACC AGGAGGAAGCCGCCTACCAGTGTGACCACCCAGCCCGAAACCTATCCTCCCCTGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCATTTTAGTACGTTAGCGCGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCAATAATTATTTAAACCACCCCTCAAAAAAAATAGACAAACACTCACACACACACAGAGATATTCCCAGTTTAGTAGCACAACAAGCATATAGAGGACGCCACCGTACCGAACACAGTAGTAGCAAGAATTATCGGTTTAGTTTGTAAAAGTGATAAGGTAAAACCCCGGCAAGCGAACGAGCGAACGAGCCCCAAAACCACCAAACCCCCCACGTGTTACGTTGGAAGGTGGCGTTTATATGCTTTGCAACGAACAGCAACTGCAGCACTTTAGTACACAGACACACAGACACACACCATTCCCTTTATAACTGTATCGTGCCGTTAACGGGAGCATGAACGAAGTTAGAAAGGGTGGGGTGTACGATGATGAAAGGAAACATTTTATTGGAGAAAGGCTGTTTAAGACATTTGCGTGCACCAGCACGCACGAGCGTATGTGTGTGTGTGCGTGTACTTGTTGCGAGCATATTTAAAGTGAACGACGATNAACGAGAAGGCGGNGTGTGTGTGNTGTTTGTAGCATTCNGGCGAGCGACCTGGTCA]




>consensus_5854#0
CCGCCCGTGTGCAAGTACACGCTCTAGTCAAATAATGGAACCGGAAACAAGTCTATTGGC
AGAAGTCGTGGGGCACGTCAGGGCATTATTGAACATCGGAAAAGGGGCGAAATCAAGTTA
ACACAGACTTTAGTTACCATCGATCAACCGAGGAGGAAGGCGCCTACCAGTGTGACCACC
CAGCCCGAAACCTATCCTCCCCAGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCT
GTGTTTTTATCCATTTTACTACGTTATCGCGTCACACCGCAATGAGTTAGAGTGAACTTG
ACTTGAAAAAGGCAATAATTATTTAAACCACCCCTCAAAAAAAATAGACAAACACTCTCA
CACACACAGAGATATTCCCAGTTTAGTAGCACAACAAGCATATAGAGGACGCCACCGTAC
CGAACACAGTAGTAGCAAGAATTATCGGTTTAGTTTGTAAAAGTGATAAGGTAAAACCCC
GGCAAGCGAACGAGCGAACGAGCCCCAAAACCACCAAACCCCCCACGTGTTACGTTGGAA
GGTGGCGTTTATATGCTTTGCAACGAACAGCAACTGCAGCACTTTAGTACACAGGCACAC
AGACACACACCATTCCCTTTATAACTGTATCGTGCCGTTAACGGGAGCATGAACGAAGTT
AGAAAGGGTGGGGTGTACGATGATGAAAGGAAACATTTTATTGGAGAAAGGCTGTTTAAG
ACATTTGCGTGCACCAGCACGCACGAGCGTATGTGTGTGTGTGCGTGTACTTGTTGCGAG
CATATTTAAAGTGAACGACGATNAACGAGAAGGCGGNGTGTGTGTGNTGTTTGTAGCATT
CNGGCGAGCGACCTGGTCA

consensusID : consensus_5854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TGGTTGGGTTCACCTTACCTGTGTCGTGTAGTGTCCGTAGGCCGCGTAGTGAGTAGTGCGTTGCGTGTTTGTGTGACTGTGTGTGCCCATTGCGTGAATTAACATCACGCCCGTGTTCGCACATTTTGTGTGTGTGTGTGTGTGTCTCCATTGCTGTGTTGTTAACCCATTTGTGATTTATAGTAACGGGGCAAAGGAAGCCGCCTACCAGTGTGACCACCCAGCCCGAAACCTATCCTCCCCTGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCATTTTAGTACGTTAGCGTGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCAATAATTATTTAAACCACCCAAAAAAAAAATAGACAAACACACACACACAGATATTCCCAGTTTAGTAGCACAACAAGCATATAAAGGACGCCACCG]

[+] EMBL BX609540             [TGGTTGGGTTCACCTTACCTGTGTCGTGTAGTGTCCGTAGGCCGCGTAGTGAGTAGTGCGTTGCGTGTTTGTGTGACTGTGTGTGCCCATTGCGTGAATTAACATCACGCCCGTGTTCGCACATTTTGTGTGTGTGTGTGTGTGTCTCCATTGCTGTGTTGTTAACCCATTTGTGATTTATAGTAACGGGGCAAAGGAAGCCGCCTACCAGTGTGACCACCCAGCCCGAAACCTATCCTCCCCTGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCATTTTAGTACGTTAGCGTGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCAATAATTATTTAAACCACCCAAAAAAAAAATAGACAAACACACACACACAGATATTCCCAGTTTAGTAGCACAACAAGCATATAAAGGACGCCACCG]




>consensus_5854#1
TGGTTGGGTTCACCTTACCTGTGTCGTGTAGTGTCCGTAGGCCGCGTAGTGAGTAGTGCG
TTGCGTGTTTGTGTGACTGTGTGTGCCCATTGCGTGAATTAACATCACGCCCGTGTTCGC
ACATTTTGTGTGTGTGTGTGTGTGTCTCCATTGCTGTGTTGTTAACCCATTTGTGATTTA
TAGTAACGGGGCAAAGGAAGCCGCCTACCAGTGTGACCACCCAGCCCGAAACCTATCCTC
CCCTGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCATTTTAG
TACGTTAGCGTGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCAATAAT
TATTTAAACCACCCAAAAAAAAAATAGACAAACACACACACACAGATATTCCCAGTTTAG
TAGCACAACAAGCATATAAAGGACGCCACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5854#0      -------------------------------------CCGCCCGTGT-GCAAGTACACGC 22
consensus_5854#1      TGGTTGGGTTCACCTTACCTGTGTCGTGTAGTGTCCGTAGGCCGCGTAGTGAGTA-GTGC 59
                                                             * *** ** *  ****   **

consensus_5854#0      TCTAGTCAAATAATGGAACCGGAAACAAGTCTATTGGCAGAAGT--CGTGGGGCACGTCA 80
consensus_5854#1      GTT-GCGTGTTTGTGTGACTGT--GTGTGCCCATTGCGTGAATTAACATCACGCCCGTGT 116
                        * *     *  **  ** *       * * ****   *** *  * *   ** ***  

consensus_5854#0      GGGCAT-TATTGAACAT-CGGAAAAGGGGCGAAATCAAGTTAACACAGACTTTAGTTACC 138
consensus_5854#1      TCGCACATTTTGTGTGTGTGTGTGTGTGTCTCCATTGCTGTGTTGTTAACCC-ATTTGTG 175
                        ***  * ***    *  *     * * *   **     *       **   * **   

consensus_5854#0      ATCGAT--CAACCGAG--GAGGAAGGCGCCTACCAGTGTGACCACCCAGCCCGAAACCTA 194
consensus_5854#1      ATTTATAGTAACGGGGCAAAGGAAGCCGCCTACCAGTGTGACCACCCAGCCCGAAACCTA 235
                      **  **   *** * *   ****** **********************************

consensus_5854#0      TCCTCCCCAGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCAT 254
consensus_5854#1      TCCTCCCCTGTCGAACCGTAGTGCGCGTGTAATCGCAGTAATCGCTGTGTTTTTATCCAT 295
                      ******** ***************************************************

consensus_5854#0      TTTACTACGTTATCGCGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCA 314
consensus_5854#1      TTTAGTACGTTAGCGTGTCACACCGCAATGAGTTAGAGTGAACTTGACTTGAAAAAGGCA 355
                      **** ******* ** ********************************************

consensus_5854#0      ATAATTATTTAAACCACCCCTCAAAAAAAATAGACAAACACTCTCACACACACAGAGATA 374
consensus_5854#1      ATAATTATTTAAACCACCCAA-AAAAAAAATAGACAAACAC------ACACACACAGATA 408
                      *******************   *******************      ******* *****

consensus_5854#0      TTCCCAGTTTAGTAGCACAACAAGCATATAGAGGACGCCACCGTACCGAACACAGTAGTA 434
consensus_5854#1      TTCCCAGTTTAGTAGCACAACAAGCATATAAAGGACGCCACCG----------------- 451
                      ****************************** ************                 

consensus_5854#0      GCAAGAATTATCGGTTTAGTTTGTAAAAGTGATAAGGTAAAACCCCGGCAAGCGAACGAG 494
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      CGAACGAGCCCCAAAACCACCAAACCCCCCACGTGTTACGTTGGAAGGTGGCGTTTATAT 554
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      GCTTTGCAACGAACAGCAACTGCAGCACTTTAGTACACAGGCACACAGACACACACCATT 614
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      CCCTTTATAACTGTATCGTGCCGTTAACGGGAGCATGAACGAAGTTAGAAAGGGTGGGGT 674
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      GTACGATGATGAAAGGAAACATTTTATTGGAGAAAGGCTGTTTAAGACATTTGCGTGCAC 734
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      CAGCACGCACGAGCGTATGTGTGTGTGTGCGTGTACTTGTTGCGAGCATATTTAAAGTGA 794
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      ACGACGATNAACGAGAAGGCGGNGTGTGTGTGNTGTTTGTAGCATTCNGGCGAGCGACCT 854
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      GGTCA 859
consensus_5854#1      -----