cluster # 5856

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Anopheles gambiae
cluster # 5856 cluster # 5856 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5856#0 length = 705 sequences # 2

consensus_5856#1 length = 673 sequences # 1
consensus_5856#2 length = 414 sequences # 1

consensusID : consensus_5856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 705
fasta sequence

                              [CCGGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGCTTCGGATGTGTTCAGTGTACGAGATGGCACAAAGTCAGCAGAGCTTTTTGAAACAGGAAGCGGGCCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTGCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATC]

[+] EMBL BM624520             [CCGGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGCTTCGGATGTGTTCAGTGTACGAGATGGCACAAAGTCAGCAGAGCTTTTTGAAACAGGAAGCGGGCCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTGCTACTCGGAGTTATTATAGGCTTTACGTTT                                        ]
[+] EMBL BM621890             [               ccgGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCG TTGCTGCTGCTGCTGCTGTTGTTGCCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGCTTCGGATGTGTTCAGTGTACGAGATGGCACAAAGTCAGCAGAGCTTTTTGAAACAGGAAGCGGGTCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTCCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATC]




>consensus_5856#0
CCGGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGC
TGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACTGAGCACCAA
TTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCG
GCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTTGCTGCTGCTGCTGC
TGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCG
AATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCT
GATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTG
TGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGCTTCGGATGTGTTCAG
TGTACGAGATGGCACAAAGTCAGCAGAGCTTTTTGAAACAGGAAGCGGGCCAGTTGAGCA
GAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGG
ACAACAAACTGATCCTGATTACGCTGAGCGGTGTGCTACTCGGAGTTATTATAGGCTTTA
CGTTTCGTCCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATC

consensusID : consensus_5856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGCGGACGCGTGGGCGAGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACCGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGCGACTCGCTCATGCTGATCGCCTACCCTGGAGAGCTATTTATGCGCGTGCTAAAGCTGATGATTCTTCCCCTCGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACACGTCGCTGCTAAATGCAATCC]

[+] EMBL BM620160             [CCGCGGACGCGTGGGCGAGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACCGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGCGACTCGCTCATGCTGATCGCCTACCCTGGAGAGCTATTTATGCGCGTGCTAAAGCTGATGATTCTTCCCCTCGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACACGTCGCTGCTAAATGCAATCC]




>consensus_5856#1
CCGCGGACGCGTGGGCGAGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTT
TGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGC
ACCACCGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAG
CAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTT
GCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTAT
CAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGA
AACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGT
GGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGGCTTTACGTTTCGTCCGCTAGG
TTTGTCCAGCGACTCGCTCATGCTGATCGCCTACCCTGGAGAGCTATTTATGCGCGTGCT
AAAGCTGATGATTCTTCCCCTCGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAA
CGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACACGTCGCTG
CTAAATGCAATCC

consensusID : consensus_5856#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [CCGCCCACGCGTCCGCGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTCCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATCGCCTATCCTGGAGAGCTATTGATGCGCGTGCTGAAGCTGATGATTCTTCCCCTGGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACCACGATCGCTGCTAAATGCAATCCTCGGCACTACACTGGCGCTTATCATACACCCGGGGGAATCCGACCGCTGAAAGTGCGGCGCACACGGAGCTACTTCG]

[+] EMBL BM621155             [CCGCCCACGCGTCCGCGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTCCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATCGCCTATCCTGGAGAGCTATTGATGCGCGTGCTGAAGCTGATGATTCTTCCCCTGGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACCACGATCGCTGCTAAATGCAATCCTCGGCACTACACTGGCGCTTATCATACACCCGGGGGAATCCGACCGCTGAAAGTGCGGCGCACACGGAGCTACTTCG]




>consensus_5856#2
CCGCCCACGCGTCCGCGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGC
TGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTCCTACTCGGAGTTATTATAG
GCTTTACGTTTCGTCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATCGCCTATCCTG
GAGAGCTATTGATGCGCGTGCTGAAGCTGATGATTCTTCCCCTGGTGATAGCGAGCCTCA
TCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTG
TGTACTTTCTGACCACGATCGCTGCTAAATGCAATCCTCGGCACTACACTGGCGCTTATC
ATACACCCGGGGGAATCCGACCGCTGAAAGTGCGGCGCACACGGAGCTACTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5856#0      ---------------CCGGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTT 45
consensus_5856#1      CCGCGGACGCGTGGGCGAGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTT 60
consensus_5856#2      ------------------------------------------------------------
                                                                                  

consensus_5856#0      TGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGC 105
consensus_5856#1      TGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGC 120
consensus_5856#2      ------------------------------------------------------------
                                                                                  

consensus_5856#0      ACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAG 165
consensus_5856#1      ACCACCGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAG 180
consensus_5856#2      ------------------------------------------------------------
                                                                                  

consensus_5856#0      CAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTT 225
consensus_5856#1      CAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTT 240
consensus_5856#2      ------------------------------------------------------------
                                                                                  

consensus_5856#0      TGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTA 285
consensus_5856#1      -GCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTA 299
consensus_5856#2      ------------------------------------------------------------
                                                                                  

consensus_5856#0      TCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACG 345
consensus_5856#1      TCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACG 359
consensus_5856#2      -------------------------------------CCGCCCACGCGTCCGCGCTGCTG 23
                                                             *     * * *         *

consensus_5856#0      AAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCG 405
consensus_5856#1      AAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCG 419
consensus_5856#2      AAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTG 83
                      **  **    ***    **** ** **   *   * *   * *    *     * * * *

consensus_5856#0      TGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGC 465
consensus_5856#1      TGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGGCTTTAC---GTTTCGTCCGC 476
consensus_5856#2      ATTACGCTGAG-CGGTGTCCTACT-CGGAGTTATTATAGGCTTTAC---GTTTCGTCCGC 138
                         * *  * * * **** * * * * *      ** **   * **       ** * **

consensus_5856#0      TTCGGATGTGTTCAGTG-----TACGAGATGG-CACAAAGTCAGCAGAGCTTTTTGAAAC 519
consensus_5856#1      T--AGGTTTGTCCAGCGACTCGCTCATGCTGATCGCCTACCCTGGAGAGCTATTT-ATGC 533
consensus_5856#2      T--AGGTTTGTCCAGTGACTCGCTCATGCTGATCGCCTATCCTGGAGAGCTATTG-ATGC 195
                      *   * * *** *** *       *  * **  * *  *  * * ****** **  *  *

consensus_5856#0      AGGAAGCGGGCCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGA 579
consensus_5856#1      GCGTGCTAAAGCTGATGATTCTTCCCCTCGTGATAGCGAGCCTCATCAGCGGCTCGTCCA 593
consensus_5856#2      GCGTGCTGAAGCTGATGATTCTTCCCCTGGTGATAGCGAGCCTCATCAGCGGCTCGTCCA 255
                        *        * * ***             * *   **   *      *  *   ** *

consensus_5856#0      GCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCT-GAGCGGTGTGCTA 638
consensus_5856#1      GCCTGA---ACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGA 650
consensus_5856#2      GCCTGA---ACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGA 312
                      **  **    ** *  *  * **  ***  *    **   **** * * *   * *   *

consensus_5856#0      CTCGGA--GTTATTATAGGCTTTACGTTTCGTCCCGCTAG-GTTTGTCCAGTGACTCGCT 695
consensus_5856#1      CACGTC--GCTGCTAAATGCAATCC----------------------------------- 673
consensus_5856#2      CCACGATCGCTGCTAAATGCAATCCTCGGCACTACACTGGCGCTTATCATACACCCGGGG 372
                      *       * *  ** * **  * *                                   

consensus_5856#0      CATGCTGATC-------------------------------- 705
consensus_5856#1      ------------------------------------------
consensus_5856#2      GAATCCGACCGCTGAAAGTGCGGCGCACACGGAGCTACTTCG 414